Works matching DE "SHORT tandem repeat analysis"

Results: 1134

Get ready for short tandem repeats analysis using long reads-the challenges and the state of the art.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1610026

By:

Chaushevska, Marija;
Alapont-Celaya, Karmele;
Schack, Anne Kristine;
Krych, Lukasz;
Garrido Navas, M. Carmen;
Krithara, Anastasia;
Madjarov, Gjorgji

Publication type:

Article

Allele frequencies of 24 STR autosomal markers in Argentina.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-025-10718-6

By:

Biagini, Sebastián;
Canteros, Malena Soledad;
Ginart, Santiago;
Rabitti, Luciana;
Gagliardi, Florencia;
Furman, Nicolás;
Herrera Piñero, Mariana

Publication type:

Article

Multicancer analyses of short tandem repeat variations reveal shared gene regulatory mechanisms Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf219

By:

Xia, Feifei;
Verbiest, Max Adriaan;
Lundström, Oxana;
Sonay, Tugce Bilgin;
Baudis, Michael;
Anisimova, Maria

Publication type:

Article

Intronic hexanucleotide repeat expansion in TYMS in monozygotic twins with congenital progressive universal melanosis.

Published in:

Biomedical Reports, 2025, v. 23, n. 2, p. N.PAG, doi. 10.3892/br.2025.2016

By:

Kanchanasutthiyakorn, Sunisa;
Chaiyamahapurk, Sakchai;
Tongkobpetch, Siraprapa;
Santawong, Kanokwan;
Srichomthong, Chalurmpon;
Klomchan, Tippayakarn;
Virochsangaroon, Chaiyaporn;
Pongpanich, Monnat;
Warnnissorn, Prateep;
Pongcharoen, Sutatip;
Shotelersuk, Vorasuk

Publication type:

Article

Analysis of short tandem repeats linked to polyglutamine diseases from whole-genome sequencing reveals intermediate alleles of HTT associated with an early disease onset in C9orf72 carriers Open Access.

Published in:

Brain Communications, 2025, v. 7, n. 3, p. 1, doi. 10.1093/braincomms/fcaf220

By:

Barbier, Mathieu;
Gareau, Thomas;
Camuzat, Agnès;
Guillaud-Bataille, Marine;
Boluda, Susana;
Clot, Fabienne;
Araktingi, Lara;
Borroni, Barbara;
van der Zee, Julie;
Ghidoni, Roberta;
Bellini, Sonia;
Galimberti, Daniela;
Rossi, Giacomina;
Nacmias, Benedetta;
Casa-Fages, Beatriz De la;
Pastor, Pau;
Groups, French Clinical and Genetic Research Network on FTD/FTD-ALS and PrevDemALS Study;
Latouche, Morwena;
Guern, Eric le;
Durr, Alexandra

Publication type:

Article

The Genetic Architecture of Parallel Armor Plate Reduction in Threespine Sticklebacks.

Published in:

PLoS Biology, 2004, v. 2, n. 3, p. 1, doi. 10.1371/journal.pbio.0020109

By:

Colosimo, Pamela F;
Peichel, Catherine L;
Nereng, Kirsten;
Blackman, Benjamin K;
Shapiro, Michael D;
Schluter, Dolph;
Kingsley, David M

Publication type:

Article

Management of lethal recessive alleles in beef cattle through the use of mate selection software.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0477-3

By:

Upperman, Lindsay R.;
Kinghorn, Brian P.;
MacNeil, Michael D.;
Van Eenennaam, Alison L.

Publication type:

Article

Identification of 10 polymorphic microsatellite loci in the high montane gastropod Semilimax kotulae using high-throughput sequence data.

Published in:

Molluscan Research, 2014, v. 34, n. 1, p. 20, doi. 10.1080/13235818.2013.868965

By:

Stoeckle, Bernhard C.;
Müller, Daniel;
Müller, Jörg;
Kuehn, Ralph

Publication type:

Article

DNA profiling for forensic identification in Bulgarian Turks.

Published in:

Medicine Science, 2021, v. 10, n. 1, p. 162, doi. 10.5455/medscience.2020.12.254

By:

Canpolat, Elif;
Yukseloglu, Emel Hulya;
Yonar, Fatma Cavus;
Rayimoglu, Gulten;
Pasin, Ozge;
Dirican, Ahmet;
Ozturk, Onur

Publication type:

Article

Development and application of polymorphic EST-SSR markers in cultured American shad (Alosa sapidissima) based on brain transcriptome datasets.

Published in:

Journal of Northwest A & F University - Natural Science Edition, 2023, v. 51, n. 11, p. 1, doi. 10.13207/j.cnki.jnwafu.2023.11.001

By:

YU Aiqing;
SHI Yonghai;
XU Jiabo;
LIU Yongshi

Publication type:

Article

葡萄酒有孢汉逊酵母属分子指纹图谱分析.

Published in:

Mycosystema, 2020, v. 39, n. 4, p. 755, doi. 10.13346/j.mycosystema.190404

By:

田进;
吴成;
杨金仙;
王春晓

Publication type:

Article

Simultaneous Monitoring of Mutation and Chimerism Using Next-Generation Sequencing in Myelodysplastic Syndrome.

Published in:

Journal of Clinical Medicine, 2019, v. 8, n. 12, p. 2077, doi. 10.3390/jcm8122077

By:

Lee, Jong-Mi;
Kim, Yoo-Jin;
Park, Sung-Soo;
Han, Eunhee;
Kim, Myungshin;
Kim, Yonggoo

Publication type:

Article

GENETIC ANALYSIS 21 SHORT TANDEM REPEATS (STR) LOCUS IN MINANGKABAU POPULATION, WEST SUMATERA, INDONESIA.

Published in:

African Journal of Infectious Diseases, 2022, v. 16, n. 2, p. 35, doi. 10.21010/ajid.v16i2.4

By:

Manela, Citra;
Susanti, Rika;
Djong Hon Tjong;
Yudianto, Ahmad

Publication type:

Article

Evaluating novel effective primers to amplify heterozygous alleles of second, third and fourth exons of HLA-A; -B; -C; -DRB1 and -DQB1 loci using sequencing-based typing.

Published in:

Journal of the National Science Foundation of Sri Lanka, 2019, v. 47, n. 3, p. 341, doi. 10.4038/jnsfsr.v47i3.9292

By:

Perera, P. C. D.;
Upamali, B. D. N.;
Gunawardene, Y. I. N. S.;
Dassanayake, R. S.

Publication type:

Article

The complete mitochondrial genome of Hipparchia autonoe (Esper, 1783) (Lepidoptera: Nymphalidae): investigation of intraspecific variations on mitochondrial genome.

Published in:

Mitochondrial DNA: Resources, 2020, v. 5, n. 2, p. 1542, doi. 10.1080/23802359.2020.1742230

By:

Lee, Yeong-Don;
Lee, Jungmo;
Kim, Do-Sung;
Park, Jonghyun;
Xi, Hong;
Roh, Jeehee;
Kim, Dong-Soon;
Nam, Sang June;
Kim, Seong-Ki;
Song, Jin-Young;
Park, Jongsun

Publication type:

Article

Genetic Diversity in Mashona, a Sanga-Type Cattle from Southern Africa.

Published in:

Journal of Animal Science, 2023, v. 101, p. 549, doi. 10.1093/jas/skad281.645

By:

Ling, Ashley;
Hay, ElHamidi;
Hayes, Emily G.;
Browning, Richard;
Blackburn, Harvey D.

Publication type:

Article

Identification of Haplotypes Associated with Fetal Loss in Dairy Cattle.

Published in:

2022

By:

Kiser, Jennifer N.;
Neibergs, Holly L.

Publication type:

Abstract

Breed authentication of five lines comparing Structure, Admixture, and an allele frequency method.

Published in:

2020

By:

Putz, Austin M.;
Charagu, Patrick;
Huisman, Abe

Publication type:

Abstract

Development of Evolutionary Systems Based on Quantum Petri Nets.

Published in:

Mathematics (2227-7390), 2022, v. 10, n. 23, p. 4404, doi. 10.3390/math10234404

By:

Letia, Tiberiu Stefan;
Durla-Pasca, Elenita Maria;
Al-Janabi, Dahlia;
Cuibus, Octavian Petru

Publication type:

Article

On the limits of fitting complex models of population history to f-statistics.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.85492

By:

Maier, Robert;
Flegontov, Pavel;
Flegontova, Olga;
Işıldak, Ulaş;
Changmai, Piya;
Reich, David

Publication type:

Article

CHIIMP: An automated high‐throughput microsatellite genotyping platform reveals greater allelic diversity in wild chimpanzees.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 16, p. 7946, doi. 10.1002/ece3.4302

By:

Barbian, Hannah J.;
Connell, Andrew Jesse;
Avitto, Alexa N.;
Russell, Ronnie M.;
Smith, Andrew G.;
Gundlapally, Madhurima S.;
Shazad, Alexander L.;
Li, Yingying;
Bibollet‐Ruche, Frederic;
Wroblewski, Emily E.;
Mjungu, Deus;
Lonsdorf, Elizabeth V.;
Stewart, Fiona A.;
Piel, Alexander K.;
Pusey, Anne E.;
Sharp, Paul M.;
Hahn, Beatrice H.

Publication type:

Article

TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data.

Published in:

GigaScience, 2020, v. 9, n. 10, p. 1, doi. 10.1093/gigascience/giaa101

By:

Bolognini, Davide;
Magi, Alberto;
Benes, Vladimir;
Korbel, Jan O;
Rausch, Tobias

Publication type:

Article

Whole‐genome identification of transposable elements reveals the equine repetitive element insertion polymorphism in Chinese horses.

Published in:

Animal Genetics, 2023, v. 54, n. 2, p. 144, doi. 10.1111/age.13277

By:

Liu, Xuexue;
Zhang, Yanli;
Pu, Yabin;
Ma, Yuehui;
Jiang, Lin

Publication type:

Article

Development of a 19‐plex short tandem repeat typing system for individual identification and parentage testing of horses (Equus caballus).

Published in:

Animal Genetics, 2021, v. 52, n. 5, p. 754, doi. 10.1111/age.13119

By:

Shang, S.;
Jiang, R.;
Luo, R.;
Jia, S.;
Irwin, D. M.;
Wang, Z.;
Zhang, S.

Publication type:

Article

Single nucleotide polymorphisms for DNA typing in the domestic horse.

Published in:

Animal Genetics, 2017, v. 48, n. 6, p. 669, doi. 10.1111/age.12608

By:

Holl, H. M.;
Vanhnasy, J.;
Everts, R. E.;
Hoefs‐Martin, K.;
Cook, D.;
Brooks, S. A.;
Carpenter, M. L.;
Bustamante, C. D.;
Lafayette, C.

Publication type:

Article

An evaluation of the International Society for Animal Genetics recommended parentage and identification panel for the domestic pigeon ( Columba livia domestica).

Published in:

Animal Genetics, 2017, v. 48, n. 4, p. 431, doi. 10.1111/age.12555

By:

Groot, M.;
Haeringen, W. A.

Publication type:

Article

Novel Y-chromosome short tandem repeats in Sus scrofa and their variation in European wild boar and domestic pig populations.

Published in:

Animal Genetics, 2016, v. 47, n. 6, p. 682, doi. 10.1111/age.12483

By:

Iacolina, L.;
Brajković, V.;
Canu, A.;
Šprem, N.;
Cubric‐Curik, V.;
Fontanesi, L.;
Saarma, U.;
Apollonio, M.;
Scandura, M.

Publication type:

Article

High-Density SNP Map Construction and QTL Identification for the Apetalous Character in Brassica napus L.

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.01164

By:

Xiaodong Wang;
Kunjiang Yu;
Hongge Li;
Qi Peng;
Feng Chen;
Wei Zhang;
Song Chen;
Maolong Hu;
Jiefu Zhang

Publication type:

Article

Evaluation of a Custom SNP Panel for Identifying and Rectifying of Misjudged Paternity in Deficiency Cases.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.602429

By:

Chang, Liao;
Yu, Huiyun;
Miao, Xinyao;
Wen, Siqi;
Zhang, Bao;
Li, Shengbin

Publication type:

Article

Development and Validation of a Novel Five-Dye Short Tandem Repeat Panel for Forensic Identification of 11 Species.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.01005

By:

Cui, Wei;
Jin, Xiaoye;
Guo, Yuxin;
Chen, Chong;
Zhang, Wenqing;
Wang, Yijie;
Lan, Jiangwei;
Zhu, Bofeng

Publication type:

Article

Forensic Autosomal Short Tandem Repeats and Their Potential Association With Phenotype.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.00884

By:

Wyner, Nicole;
Barash, Mark;
McNevin, Dennis

Publication type:

Article

SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00706

By:

Gou, Xiangjian;
Shi, Haoran;
Yu, Shifan;
Wang, Zhiqiang;
Li, Caixia;
Liu, Shihang;
Ma, Jian;
Chen, Guangdeng;
Liu, Tao;
Liu, Yaxi

Publication type:

Article

Identification and validation of SSR markers for Xanthomonas axonopodis pv. punicae an incitant of bacterial blight of pomegranate.

Published in:

3 Biotech, 2022, v. 12, n. 7, p. 1, doi. 10.1007/s13205-022-03209-z

By:

Patil, Prakash G.;
Sharma, Jyotsana;
Nanjundappa, Manjunatha;
Singh, N. V.;
Bohra, Abhishek;
Gunnaiah, Raghavendra;
Jamma, Shivani M.;
Vinayaka, Jeer;
Sangnure, Vipul R.;
Marathe, R. A.

Publication type:

Article

Polygenic burden of short tandem repeat expansions promotes risk for Alzheimer's disease.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-56400-0

By:

Guo, Michael H.;
Lee, Wan-Ping;
Vardarajan, Badri;
Schellenberg, Gerard D.;
Phillips-Cremins, Jennifer E.

Publication type:

Article

bistro: An R package for vector bloodmeal identification by short tandem repeat overlap.

Published in:

Methods in Ecology & Evolution, 2024, v. 15, n. 2, p. 308, doi. 10.1111/2041-210X.14277

By:

Lapp, Zena;
Abel, Lucy;
Mangeni, Judith;
Obala, Andrew A.;
O'Meara, Wendy P.;
Taylor, Steve M.;
Markwalter, Christine F.

Publication type:

Article

A joint likelihood estimator of relatedness and allele frequencies from a small sample of individuals.

Published in:: Methods in Ecology & Evolution, 2022, v. 13, n. 11, p. 2443, doi. 10.1111/2041-210X.13963
Publication type:: Article

Application of mixsep software package: Performance verification of male-mixed DNA analysis.

Published in:

Molecular Medicine Reports, 2015, v. 12, n. 2, p. 2431, doi. 10.3892/mmr.2015.3710

By:

NA HU;
BIN CONG;
TAO GAO;
YU CHEN;
JUNYI SHEN;
SHUJIN LI;
CHUNLING MA

Publication type:

Article

Coexistence of paternally-inherited ABCC8 mutation and mosaic paternal uniparental disomy 11p hyperinsulinism.

Published in:

International Journal of Pediatric Endocrinology, 2020, v. 2020, n. 1, p. 1, doi. 10.1186/s13633-020-00083-5

By:

Tung, Joanna Yuet-ling;
Lai, Sophie Hon Yu;
Au, Sandy Leung Kuen;
Yeung, Kit San;
Kan, Anita Sik Yau;
Loong, Florence;
DeLeón, Diva D.;
Kalish, Jennifer M.;
Ganguly, Arupa;
Chung, Brian Hon Yin;
Chan, Kelvin Yuen Kwong

Publication type:

Article

DNA profiling of Hungarian King Béla III and other skeletal remains originating from the Royal Basilica of Székesfehérvár.

Published in:

Archaeological & Anthropological Sciences, 2019, v. 11, n. 4, p. 1345, doi. 10.1007/s12520-018-0609-7

By:

Olasz, Judit;
Seidenberg, Verena;
Hummel, Susanne;
Szentirmay, Zoltán;
Szabados, György;
Melegh, Béla;
Kásler, Miklós

Publication type:

Article

Observation of Tri-allelic Patterns in Autosomal STRs during Establishment of Genetic Fingerprint Database for the Iraqi Security Forces.

Published in:

Indian Journal of Forensic Medicine & Toxicology, 2022, v. 16, n. 3, p. 159, doi. 10.37506/ijfmt.v16i3.18273

By:

Salih, Esam Ghazi Mohammed;
Nader, Mohammed Ibrahim;
Sabbah, Majeed Arsheed;
Al-Zubaidi, Mohammed Mahdi;
Mahmood, Hanan Khaleel;
Salih, Khalifah Mahdi;
Hasan, Dhurgham Hameed

Publication type:

Article

Allele Frequencies of 13 Chromosome X STR in Arab Iraqi Population.

Published in:

Indian Journal of Forensic Medicine & Toxicology, 2020, v. 14, n. 4, p. 3188, doi. 10.37506/ijfmt.v14i4.12117

By:

Abdrazik, Mostafa M.;
Rasheed, Marrib N.;
Farhan, Mohammed Mashni

Publication type:

Article

Study on genetic variation of Short Tandem Repeats (STR) markers and their association with Somatic Cell Scores (SCS) in crossbred cows.

Published in:

Indian Journal of Animal Research, 2016, v. 50, n. 4, p. 450, doi. 10.18805/ijar.6709

By:

Gupta, Jay Prakash;
Bhushan, Bharat;
Panigrahi, Manjit;
Ranjan, Sanjeev;
Asaf, V. N. Muhasin;
Kumar, Amod;
Sulabh, Sourabh;
Kumar, Amit;
Kumar, Pushpendra;
Sharma, Deepak

Publication type:

Article

Mitigating Chinese-Indian rhesus macaque ( Macaca mulatta) hybridity at the California National Primate Research Center (CNPRC).

Published in:

Journal of Medical Primatology, 2016, v. 45, n. 6, p. 333, doi. 10.1111/jmp.12231

By:

Kanthaswamy, Sree;
Ng, Jillian;
Broatch, Jennifer;
Short, Jennifer;
Roberts, Jeffrey

Publication type:

Article

Genetic diversity and population structure of long-tailed macaque ( Macaca fascicularis) populations in Peninsular Malaysia.

Published in:

Journal of Medical Primatology, 2014, v. 43, n. 6, p. 433, doi. 10.1111/jmp.12130

By:

Nikzad, Sonia;
Tan, Soon Guan;
Yong Seok Yien, Christina;
Ng, Jillian;
Alitheen, Noorjahan Banu;
Khan, Razib;
Rovie‐Ryan, Jeffrine J.;
Valdiani, Alireza;
Khajeaian, Parastoo;
Kanthaswamy, Sree

Publication type:

Article

Applicability of human-specific STR systems, GlobalFiler™ PCR Amplification Kit, Investigator 24plex QS Kit, and PowerPlex® Fusion 6C in chimpanzee (Pan troglodytes).

Published in:

BMC Research Notes, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13104-021-05632-6

By:

Singh, Abhishek;
Sahajpal, Vivek;
Thakur, Mukesh;
Sharma, Lalit Kumar;
Chandra, Kailash;
Bhandari, Deepika;
Sharma, Arun

Publication type:

Article

Genetic assessment of milkfish (Chanos chanos Forsskal) stocks based on novel short tandem repeats for marker-aided broodstock management.

Published in:

Aquaculture Research, 2018, v. 49, n. 4, p. 1557, doi. 10.1111/are.13610

By:

Romana-Eguia, Maria Rowena R;
Santos, Brian S;
Ikeda, Minoru;
Basiao, Zubaida U;
Kijima, Akihiro

Publication type:

Article

Global, regional, and cryptic population structure in a high gene-flow transatlantic fish.

Published in:

PLoS ONE, 2023, v. 18, n. 3, p. 1, doi. 10.1371/journal.pone.0283351

By:

Jansson, Eeva;
Faust, Ellika;
Bekkevold, Dorte;
Quintela, María;
Durif, Caroline;
Halvorsen, Kim Tallaksen;
Dahle, Geir;
Pampoulie, Christophe;
Kennedy, James;
Whittaker, Benjamin;
Unneland, Laila;
Post, Søren;
André, Carl;
Glover, Kevin A.

Publication type:

Article

The Genomic landscape of short tandem repeats across multiple ancestries.

Published in:

PLoS ONE, 2023, v. 18, n. 1, p. 1, doi. 10.1371/journal.pone.0279430

By:

Vijayaraghavan, Prashanth;
Batalov, Sergey;
Ding, Yan;
Sanford, Erica;
Kingsmore, Stephen F.;
Dimmock, David;
Hobbs, Charlotte;
Bainbridge, Matthew

Publication type:

Article

Description of novel capsule biosynthesis loci of Campylobacter jejuni clinical isolates from South and South-East Asia.

Published in:

PLoS ONE, 2023, v. 18, n. 1, p. 1, doi. 10.1371/journal.pone.0280583

By:

Khemnu, Nuanpan;
Serichantalergs, Oralak;
Ruekit, Sirigade;
Lertsethtakarn, Paphavee;
Poly, Frédéric;
Swierczewski, Brett E.;
Crawford, John M.

Publication type:

Article

Multiplex short tandem repeat profiling of immortalized hepatic stellate cell line Col-GFP HSC.

Published in:

PLoS ONE, 2022, v. 17, n. 9, p. 1, doi. 10.1371/journal.pone.0274219

By:

Meurer, Steffen K.;
Brenner, David A.;
Weiskirchen, Ralf

Publication type:

Article