Works about SEQUENCE alignment

Results: 2793

Nevşehir Yöresindeki Sahipli Kedi ve Köpeklerde Giardia duodenalis'in Moleküler Prevalansı ve Genetik Karakterizasyonu.

Published in:

Journal of Faculty of Veterinary Medicine, Erciyes University / Erciyes Üniversitesi Veteriner Fakültesi Dergisi, 2025, v. 22, n. 1, p. 28, doi. 10.32707/ercivet.1595487

By:

SATAŞMAZ, Beyzanur;
KARADEMİR, Gupse Kübra;
ÇİLOĞLU, Arif

Publication type:

Article

bpRNA-CosMoS: a robust and efficient RNA structural comparison method using k-mer based cosine similarity Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf108

By:

Lasher, Brittany;
Hendrix, David A

Publication type:

Article

A Method for Functional Protein Classification Enhanced by Multiple Sequence Alignment.

Published in:

IAENG International Journal of Computer Science, 2025, v. 52, n. 3, p. 637

By:

Pengda Zhang

Publication type:

Article

Molecular analysis of BCL6 and C-MYC genes of lymphoma.

Published in:

Romanian Medical Journal, 2025, v. 72, n. 1, p. 97, doi. 10.37897/RMJ.2025.1.17

By:

Hasan, Sarah Sakban;
Aziz, Hanaa Ali

Publication type:

Article

牡丹 PomiR2592bj 及其靶基因 PoSDR1 的克隆与生物信息学分析.

Published in:

Journal of Henan Agricultural Sciences, 2025, v. 54, n. 3, p. 120, doi. 10.15933/j.cnki.1004-3268.2025.03.013

By:

雷炀;
高靖姗;
南琼琼;
郭丽丽;
侯小改

Publication type:

Article

Fast noisy long read alignment with multi-level parallelism.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06129-w

By:

Xia, Zeyu;
Yang, Canqun;
Peng, Chenchen;
Guo, Yifei;
Guo, Yufei;
Tang, Tao;
Cui, Yingbo

Publication type:

Article

Investigation of dynamic microbial migration patterns in the respiratory tract.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1542562

By:

Fang, Ping;
Wen, Yanhua;
Deng, Wenjing;
Liang, Ruobing;
He, Ping;
Wang, Chunya;
Fan, Na;
Huo, Kaikai;
Zhao, Kaikai;
Li, Cong;
Bai, Ying;
Ma, Yuwan;
Hu, Long;
Guan, Yuanlin;
Yang, Shuanying

Publication type:

Article

辣椒炭疽病菌鉴定及炭疽菌胁迫下的生理变化.

Published in:

Southwest China Journal of Agricultural Sciences, 2024, v. 37, n. 10, p. 2185, doi. 10.16213/j.cnki.sojas.2024.10.006

By:

张兴月;
陈金鑫;
王欣;
刘国元;
余春梅;
张健;
魏辉

Publication type:

Article

Expression and molecular characterization of an intriguing hyaluronan synthase (HAS) from the symbiont "Candidatus Mycoplasma liparidae" in snailfish.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19253

By:

Guo, Lulu;
Wang, Shaolu;
Lian, Chunang;
He, Lisheng

Publication type:

Article

iSeqSearch: incremental protein search for iBlast/iMMSeqs2/iDiamond.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19171

By:

Yoo, Hyunwoo;
Refahi, Mohammadsaleh;
Polikar, Robi;
Sokhansanj, Bahrad A.;
Brown, James R.;
Rosen, Gail L.

Publication type:

Article

Squirrel: Reconstructing Semi-directed Phylogenetic Level-1 Networks from Four-Leaved Networks or Sequence Alignments.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf067

By:

Holtgrefe, Niels;
Huber, Katharina T;
Iersel, Leo van;
Jones, Mark;
Martin, Samuel;
Moulton, Vincent

Publication type:

Article

A User's Guide to the Encyclopedia of DNA Elements (ENCODE).

Published in:: PLoS Biology, 2011, v. 9, n. 4, p. 1, doi. 10.1371/journal.pbio.1001046
Publication type:: Article

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough.

Published in:

2011

By:

Philippe, Hervé;
Brinkmann, Henner;
Lavrov, Dennis V.;
Littlewood, D. Timothy J.;
Manuel, Michael;
Wörheide, Gert;
Baurain, Denis

Publication type:

Opinion

RPfam: A refiner towards curated-like multiple sequence alignments of the Pfam protein families.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 4, p. 1, doi. 10.1142/S0219720022400029

By:

Wei, Qingting;
Zou, Hong;
Zhong, Cuncong;
Xu, Jianfeng

Publication type:

Article

Introduction to Selected Papers from InCoB 2021.

Published in:: 2022
Publication type:: Editorial

EdClust: A heuristic sequence clustering method with higher sensitivity.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1142/S0219720021500360

By:

Cao, Ming;
Peng, Qinke;
Wei, Ze-Gang;
Liu, Fei;
Hou, Yi-Fan

Publication type:

Article

Structural profile matrices for predicting structural properties of proteins.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 4, p. N.PAG, doi. 10.1142/S0219720020500225

By:

Azginoglu, Nuh;
Aydin, Zafer;
Celik, Mete

Publication type:

Article

ProgSIO-MSA: Progressive-based single iterative optimization framework for multiple sequence alignment using an effective scoring system.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 2, p. N.PAG, doi. 10.1142/S0219720020500055

By:

Bankapur, Sanjay;
Patil, Nagamma

Publication type:

Article

Fast and memory efficient approach for mapping NGS reads to a reference genome.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 2, p. N.PAG, doi. 10.1142/S0219720019500082

By:

Kumar, Sanjeev;
Agarwal, Suneeta;
Ranvijay

Publication type:

Article

Refined template selection and combination algorithm significantly improves template-based modeling accuracy.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 2, p. N.PAG, doi. 10.1142/S0219720019500069

By:

Runthala, Ashish;
Chowdhury, Shibasish

Publication type:

Article

A hybrid solver for protein multiple sequence alignment problem.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 4, p. N.PAG, doi. 10.1142/S0219720018500154

By:

Chaabane, Lamiche

Publication type:

Article

An accurate and fast alignment-free method for profiling microbial communities.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017400017

By:

Pham, Diem-Trang;
Gao, Shanshan;
Phan, Vinhthuy

Publication type:

Article

Contribution of bacterial promoter elements to transcription start site detection accuracy.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720016500384

By:

Nikolic, Milos;
Stankovic, Tamara;
Djordjevic, Marko

Publication type:

Article

Samira-VP: A simple protein alignment method with rechecking the alphabet vector positions.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720017500044

By:

Fotoohifiroozabadi, Samira;
Mohamad, Mohd Saberi;
Deris, Safaai

Publication type:

Article

SAMSVM: A tool for misalignment filtration of SAM-format sequences with support vector machine.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 6, p. 1, doi. 10.1142/S0219720015500250

By:

Yang, Jianfeng;
Ding, Xiaofan;
Sun, Xing;
Tsang, Shui-Ying;
Xue, Hong

Publication type:

Article

Resolving the multiple sequence alignment problem using biogeography-based optimization with multiple populations.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S021972001550016X

By:

Zemali, El-Amine;
Boukra, Abdelmadjid

Publication type:

Article

A SIMPLE SHORTCUT TO UNSUPERVISED ALIGNMENT-FREE PHYLOGENETIC GENOME GROUPINGS, EVEN FROM UNASSEMBLED SEQUENCING READS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 6, p. 1, doi. 10.1142/S0219720013430051

By:

MAURER-STROH, SEBASTIAN;
GUNALAN, VITHIAGARAN;
WING-CHEONG WONG;
EISENHABER, FRANK

Publication type:

Article

INCREASING POWER BY USING HAPLOTYPE SIMILARITY IN A MULTIMARKER TRANSMISSION/DISEQUILIBRIUM TEST.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1142/S021972001250014X

By:

ABAD-GRAU, MARÍA M.;
MEDINA-MEDINA, NURIA;
MORAL, SERAFÍN;
MONTES-SOLDADO, ROSANA;
TORRES-SÁNCHEZ, SERGIO;
MATESANZ, FUENCISLA

Publication type:

Article

FROM BINDING MOTIFS IN CHIP-SEQ DATA TO IMPROVED MODELS OF TRANSCRIPTION FACTOR BINDING SITES.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400040

By:

KULAKOVSKIY, IVAN;
LEVITSKY, VICTOR;
OSHCHEPKOV, DMITRY;
BRYZGALOV, LEONID;
VORONTSOV, ILYA;
MAKEEV, VSEVOLOD

Publication type:

Article

A BIT-PARALLEL DYNAMIC PROGRAMMING ALGORITHM SUITABLE FOR DNA SEQUENCE ALIGNMENT.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 4, p. 1250002-1, doi. 10.1142/S0219720012500023

By:

KIMURA, KOUICHI;
KOIKE, ASAKO;
NAKAI, KENTA

Publication type:

Article

THE JANUS-FACED E-VALUES OF HMMER2:: EXTREME VALUE DISTRIBUTION OR LOGISTIC FUNCTION?

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 179, doi. 10.1142/S0219720011005264

By:

WONG, WING-CHEONG;
MAURER-STROH, SEBASTIAN;
EISENHABER, FRANK

Publication type:

Article

ON COMPARING TWO STRUCTURED RNA MULTIPLE ALIGNMENTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 6, p. 967, doi. 10.1142/S021972001000504X

By:

PATEL, VANDANABEN;
WANG, JASON T. L.;
SETIA, SHEFALI;
VERMA, ANURAG;
WARDEN, CHARLES D.;
ZHANG, KAIZHONG

Publication type:

Article

Functional Characterisation of Highly Conserved and Structurally Prominent Residues of 2‐Methylisoborneol Synthase.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 32, p. 1, doi. 10.1002/chem.202300775

By:

Gu, Binbin;
Dickschat, Jeroen S.

Publication type:

Article

Coral symbionts evolved a functional polycistronic flavodiiron gene.

Published in:

Photosynthesis Research, 2022, v. 151, n. 1, p. 113, doi. 10.1007/s11120-021-00867-7

By:

Shimakawa, Ginga;
Shoguchi, Eiichi;
Burlacot, Adrien;
Ifuku, Kentaro;
Che, Yufen;
Kumazawa, Minoru;
Tanaka, Kenya;
Nakanishi, Shuji

Publication type:

Article

Small design from big alignment: engineering proteins with multiple sequence alignment as the starting point.

Published in:

Biotechnology Letters, 2020, v. 42, n. 8, p. 1305, doi. 10.1007/s10529-020-02914-0

By:

Wang, Tianwen;
Liang, Chen;
Hou, Yajing;
Zheng, Mengyuan;
Xu, Hongju;
An, Yafei;
Xiao, Sa;
Liu, Lu;
Lian, Shuaibin

Publication type:

Article

Purification and enzymatic characterization of the RNA ligase RTCB from Thermus thermophilus.

Published in:

Biotechnology Letters, 2019, v. 41, n. 8/9, p. 1051, doi. 10.1007/s10529-019-02707-0

By:

Duan, Shuyan;
Chen, Zijun;
Li, Zhengyang;
Ji, Rui;
Gan, Jianhua;
Li, Jixi

Publication type:

Article

Functional analysis of PsG6PDH, a cytosolic glucose-6-phosphate dehydrogenase gene from Populus suaveolens, and its contribution to cold tolerance improvement in tobacco plants.

Published in:

Biotechnology Letters, 2013, v. 35, n. 9, p. 1509, doi. 10.1007/s10529-013-1226-2

By:

Lin, Yuanzhen;
Lin, Shanzhi;
Guo, Hai;
Zhang, Zhiyi;
Chen, Xiaoyang

Publication type:

Article

Gly-345 plays an essential role in Pyrococcus furiosus chaperonin function.

Published in:

Biotechnology Letters, 2011, v. 33, n. 8, p. 1649, doi. 10.1007/s10529-011-0615-7

By:

Li-da Yang;
Zhong-Mei Chu;
Yi Zhang;
Sheng-Li Yang

Publication type:

Article

Introduction of amino acid residues at the N-terminus of the zeocin-resistance protein increases its expression in Saccharomyces cerevisiae.

Published in:

Biotechnology Letters, 2010, v. 32, n. 10, p. 1515, doi. 10.1007/s10529-010-0325-6

By:

Sugano, Yohei;
Kawamura, Yoshifumi;
Goshima, Naoki;
Morita, Naoki;
Ohgiya, Satoru

Publication type:

Article

A novel l-asparaginase from Aquabacterium sp. A7-Y with self-cleavage activation.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 1, p. 121, doi. 10.1007/s10482-015-0614-0

By:

Sun, Zhibin;
Li, Ding;
Liu, Pingping;
Wang, Wenhui;
Ji, Kai;
Huang, Yan;
Cui, Zhongli

Publication type:

Article

Variibacter gotjawalensis gen. nov., sp. nov., isolated from soil of a lava forest.

Published in:

Antonie van Leeuwenhoek, 2014, v. 105, n. 5, p. 915, doi. 10.1007/s10482-014-0146-z

By:

Kim, Kwang;
Lee, Keun;
Eom, Mi;
Kim, Jong-Shik;
Kim, Dae-Shin;
Ko, Suk-Hyung;
Kim, Byung-Hyuk;
Lee, Jung-Sook

Publication type:

Article

Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México.

Published in:

Antonie van Leeuwenhoek, 2011, v. 99, n. 2, p. 303, doi. 10.1007/s10482-010-9490-9

By:

Cerritos, René;
Eguiarte, Luis E.;
Avitia, Morena;
Siefert, Janet;
Travisano, Michael;
Rodríguez-Verdugo, Alejandra;
Souza, Valeria

Publication type:

Article

Comparative symbiotic performance of native rhizobia of the Flooding Pampa and strains currently used for inoculating Lotus tenuis in this region.

Published in:

Antonie van Leeuwenhoek, 2011, v. 99, n. 2, p. 371, doi. 10.1007/s10482-010-9502-9

By:

Sannazzaro, Analía Inés;
Bergottini, Verónica Mariel;
Paz, Rosalía Cristina;
Castagno, Luis Nazareno;
Menéndez, Ana Bernardina;
Ruiz, Oscar Adolfo;
Pieckenstain, Fernando Luis;
Estrella, María Julia

Publication type:

Article

Pseudonocardia sichuanensis sp. nov., a novel endophytic actinomycete isolated from the root of Jatropha curcas L.

Published in:

Antonie van Leeuwenhoek, 2011, v. 99, n. 2, p. 395, doi. 10.1007/s10482-010-9504-7

By:

Sheng Qin;
Ke Xing;
Shi-Min Fei;
Qiang Lin;
Xiu-Min Chen;
Cheng-Liang Cao;
Yong Sun;
Yun Wang;
Wen-Jun Li;
Ji-Hong Jiang

Publication type:

Article

Bacillus deserti sp. nov., a novel bacterium isolated from the desert of Xinjiang, China.

Published in:

Antonie van Leeuwenhoek, 2011, v. 99, n. 2, p. 221, doi. 10.1007/s10482-010-9479-4

By:

Lei Zhang;
Gao-Lin Wu;
Yang Wang;
Jun Dai;
Cheng-Xiang Fang

Publication type:

Article

Bd oxidase homologue of photosynthetic purple sulfur bacterium Allochromatium vinosum is co-transcribed with a nitrogen fixation related gene.

Published in:

Antonie van Leeuwenhoek, 2011, v. 99, n. 2, p. 211, doi. 10.1007/s10482-010-9478-5

By:

Dincturk, H. Benan;
Demir, Volkan;
Aykanat, Tutku

Publication type:

Article

Cohort analytics: efficiency and applicability.

Published in:

VLDB Journal International Journal on Very Large Data Bases, 2020, v. 29, n. 6, p. 1527, doi. 10.1007/s00778-020-00625-6

By:

Omidvar-Tehrani, Behrooz;
Amer-Yahia, Sihem;
Lakshmanan, Laks V. S.

Publication type:

Article

Epithelial and ganglionic distribution at the distal rectal end in anorectal malformations: could it play a role in anastomotic adaptation?

Published in:

Pediatric Surgery International, 2021, v. 37, n. 2, p. 281, doi. 10.1007/s00383-020-04786-x

By:

Uemura, Kotaro;
Fukuzawa, Hiroaki;
Morita, Keiichi;
Okata, Yuichi;
Yoshida, Makiko;
Maeda, Kosaku

Publication type:

Article

A large diversity of lactic acid bacteria species is involved in the fermentation of wheat used for the manufacture of lemzeiet.

Published in:

European Food Research & Technology, 2015, v. 241, n. 1, p. 137, doi. 10.1007/s00217-015-2442-x

By:

Merabti, Ryma;
Bekhouche, Farida;
Chuat, Victoria;
Madec, Marie;
Maillard, Marie;
Bailly, Sylviane;
Thierry, Anne;
Valence, Florence

Publication type:

Article

Uncovering cryptic diversity in the enigmatic ant genus Overbeckia and insights into the phylogeny of Camponotini (Hymenoptera : Formicidae : Formicinae).

Published in:: Invertebrate Systematics, 2022, v. 36, n. 7, p. 679, doi. 10.1071/IS21067
Publication type:: Article