Works matching DE "SEQUENCE alignment"

Results: 2807

A genome-wide association study identifies candidate genes for target leaf spot disease resistance in adult cucumber (Cucumis sativus L.).

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1542274

By:

Xu, Ying'ao;
Dong, Shaoyun;
Xie, Xuewen;
Beckles, Diane M.;
Liu, Xiaoping;
Guan, Jiantao;
Li, Caixia;
Gu, Xingfang;
Miao, Han;
Zhang, Shengping

Publication type:

Article

Evolutionary insights into Interleukin-12 family targets across 405 species.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1584460

By:

Wang, Weibin;
Li, Dawei;
Luo, Kaiyong;
Chen, Baozheng;
Li, Xuzhen;
Hao, Tingting;
Guo, Dazhong;
Dong, Yang;
Ning, Ya

Publication type:

Article

Pharmacological modulation of MRAP2 protein on murine melatonin receptor signaling.

Published in:

Frontiers in Endocrinology, 2025, p. 1, doi. 10.3389/fendo.2025.1593345

By:

Song, Wenqi;
Li, Yanchuan;
Xu, Hongtao;
Zhang, Yaqun;
Liu, Liu;
Li, Yihao;
Wang, Xinran;
Du, Yueming;
Chen, Yining;
Lyu, Jianjun;
Jin, Lingjing;
Zhang, Chao;
Xiao, Yuchen

Publication type:

Article

253 种中成药组方君臣佐使与药品说明书成分书写顺序的关联性分析.

Published in:

Evaluation & Analysis of Drug-Use in Hospitals of China / Zhongguo Yiyuan Yongyao Pingjia yu Fenxi, 2025, v. 25, n. 5, p. 555, doi. 10.14009/j.issn.1672-2124.2025.05.009

By:

王岩;
金锐

Publication type:

Article

Identification and Abiotic Stress Expression Profiling of Malic Enzyme-Associated Genes in Maize (Zea mays L.).

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1603, doi. 10.3390/plants14111603

By:

Yan, Haishan;
Li, Yongsheng;
Ma, Zengke;
Wang, Ruihong;
Zhou, Yuqian;
Zhou, Wenqi;
He, Haijun;
Wang, Xiaojuan;
Lian, Xiaorong;
Dong, Xiaoyun;
Yao, Lirong

Publication type:

Article

Isolation and functional determination of inward-rectifier K<sup>+</sup> channel PbrAKT1 in pear.

Published in:

New Zealand Journal of Crop & Horticultural Science, 2025, v. 53, n. 3, p. 486, doi. 10.1080/01140671.2024.2406927

By:

Chen, Guodong;
Wang, Li;
Chen, Qian;
Yang, Lanting;
Yu, Tiantian;
Wu, Juyou

Publication type:

Article

تجربه کاربران با آسیب بینایی در تعامل با سامان ههای پژوهشگاه علوم و فناوری اطلاعات ایران: چال شها و محدودی تها 1

Published in:

Library & Information Sciences (1680-9637), 2025, v. 28, n. 1, p. 63

By:

اعظم نجفقل ینژاد

Publication type:

Article

AMPGen: an evolutionary information-reserved and diffusion-driven generative model for de novo design of antimicrobial peptides.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08282-7

By:

Jin, Shuwen;
Zeng, Zihan;
Xiong, Xiyan;
Huang, Baicheng;
Tang, Li;
Wang, Hongsheng;
Ma, Xiao;
Tang, Xiaochun;
Shao, Guoqing;
Huang, Xingxu;
Lin, Feng

Publication type:

Article

A Machine Learning Approach to Generate High-Resolution Maps of Irrigated Olive Groves.

Published in:

Land (2012), 2025, v. 14, n. 5, p. 1001, doi. 10.3390/land14051001

By:

Gutiérrez-Cabrera, Rosa;
Tarquis, Ana M.;
Borondo, Javier

Publication type:

Article

MAFcounter: an efficient tool for counting the occurrences of k-mers in MAF files.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06172-7

By:

Patsakis, Michail;
Provatas, Kimonas;
Karatzikos, Aris;
Koilakos, Charalampos;
Mouratidis, Ioannis;
Georgakopoulos-Soares, Ilias

Publication type:

Article

From Sequence Definition to Structure‐Property Relationships in Discrete Synthetic Macromolecules: Insights from Molecular Modeling.

Published in:

Angewandte Chemie, 2025, v. 137, n. 23, p. 1, doi. 10.1002/ange.202420179

By:

Dellemme, David;
Kardas, Sinan;
Tonneaux, Corentin;
Lernould, Julien;
Fossépré, Mathieu;
Surin, Mathieu

Publication type:

Article

An essential role for CtIP in chromosomal translocation formation through an alternative end-joining pathway.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 1, p. 80, doi. 10.1038/nsmb.1940

By:

Zhang, Yu;
Jasin, Maria

Publication type:

Article

Solving the NES problem.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 11, p. 1288, doi. 10.1038/nsmb1110-1288

By:

Mattaj, Iain W.;
Müller, Christoph W.

Publication type:

Article

Synthetic biology: We can rebuild you.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 6, p. 378, doi. 10.1038/nrmicro2803

By:

Jermy, Andrew

Publication type:

Article

Genome sequencing gets func-y.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 6, p. 401, doi. 10.1038/nrmicro2583

By:

Reid, Adam J.

Publication type:

Article

Alignment change in Chukotkan: Further exploration of the pathways to ergativity.

Published in:

Diachronica, 2019, v. 36, n. 2, p. 222, doi. 10.1075/dia.18016.kan

By:

Kantarovich, Jessica

Publication type:

Article

Cloud Convergence.

Published in:

Bio-IT World, 2010, v. 9, n. 3, p. 44

By:

DAVIES, KEVIN

Publication type:

Article

Life in the Fast Life.

Published in:: 2010
Publication type:: Interview

Ion Torrent Announces Winners in Sequencer Giveaway.

Published in:

Bio-IT World, 2010, v. 9, n. 3, p. 10

By:

DAVIES, KEVIN

Publication type:

Article

Illumina's HiSeq 2000 Hits $10,000 Genome Mark.

Published in:

Bio-IT World, 2010, v. 9, n. 2, p. D-5

By:

DAVIES, KEVIN

Publication type:

Article

Ignition Sequence Starts.

Published in:

2010

By:

DAVIES, KEVIN

Publication type:

Interview

Functional Characterisation of Highly Conserved and Structurally Prominent Residues of 2‐Methylisoborneol Synthase.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 32, p. 1, doi. 10.1002/chem.202300775

By:

Gu, Binbin;
Dickschat, Jeroen S.

Publication type:

Article

Affinity Maturation of Macrocyclic Peptide Modulators of Lys48‐Linked Diubiquitin by a Twofold Strategy.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 36, p. 8022, doi. 10.1002/chem.202000273

By:

Huang, Yichao;
Nawatha, Mickal;
Livneh, Ido;
Rogers, Joseph M.;
Sun, Hao;
Singh, Sumeet K.;
Ciechanover, Aaron;
Brik, Ashraf;
Suga, Hiroaki

Publication type:

Article

Complete genomic characterization and evolutionary analysis of CMV isolate associated with Ocimum gratissimum.

Published in:

European Journal of Plant Pathology, 2023, v. 166, n. 1, p. 1, doi. 10.1007/s10658-023-02638-7

By:

Sinha, Soumya;
Samad, Abdul

Publication type:

Article

The ZW sex microchromosomes of an Australian dragon lizard share no homology with those of other reptiles or birds.

Published in:

Chromosome Research, 2009, v. 17, n. 8, p. 965

By:

Benjamin Moritz;
Paul Waters;
Jennifer Marshall Graves;
Arthur Georges;
Stephen Sarre

Publication type:

Article

Chromosome homologies of the highly rearranged karyotypes of four Akodon species (Rodentia, Cricetidae) resolved by reciprocal chromosome painting: the evolution of the lowest diploid number in rodents.

Published in:

Chromosome Research, 2009, v. 17, n. 8, p. 1063

By:

Patricia O’Brien;
Yatiyo Yonenaga-Yassuda;
Malcolm Ferguson-Smith

Publication type:

Article

Inorganic mercury in mammary cells: viability, metal uptake but efflux?

Published in:

BioMetals, 2018, v. 31, n. 1, p. 69, doi. 10.1007/s10534-017-0068-0

By:

Maniero, Mariángeles Ávila;
Guerrero-Gimenez, Martin E.;
Fanelli, Mariel A.;
Wuilloud, Rodolfo G.

Publication type:

Article

Family-Based Whole Genome Sequencing Identified Novel Variants in ABCA5 Gene in a Patient with Idiopathic Ventricular Tachycardia.

Published in:

Pediatric Cardiology, 2020, v. 41, n. 8, p. 1783, doi. 10.1007/s00246-020-02446-4

By:

Du, Zhanhui;
Kuang, Shan;
Li, Yong;
Han, Peng;
Liu, Junnian;
Wang, Zhiwei;
Huang, Yingping;
Guan, Yuanning;
Xu, Xun;
Liu, Xin;
Banerjee, Santasree;
Pan, Silin

Publication type:

Article

Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 92, n. 3, p. 641, doi. 10.1007/s00253-011-3492-z

By:

Shao, Xiongjun;
Raman, Babu;
Zhu, Mingjun;
Mielenz, Jonathan;
Brown, Steven;
Guss, Adam;
Lynd, Lee

Publication type:

Article

Characterization of Xyn10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 87, n. 6, p. 2097, doi. 10.1007/s00253-010-2694-0

By:

Mirande, Caroline;
Mosoni, Pascale;
Béra-Maillet, Christel;
Bernalier-Donadille, Annick;
Forano, Evelyne

Publication type:

Article

Beyond similarity assessment: selecting the optimal model for sequence alignment via the Factorized Asymptotic Bayesian algorithm.

Published in:

Bioinformatics, 2018, v. 34, n. 4, p. 576, doi. 10.1093/bioinformatics/btx643

By:

Takeda, Taikai;
Hamada, Michiaki

Publication type:

Article

An efficient concordant integrative analysis of multiple large-scale two-sample expression data sets.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3852, doi. 10.1093/bioinformatics/btx061

By:

Yinglei Lai;
Fanni Zhang;
Nayak, Tapan K.;
Modarres, Reza;
Lee, Norman H.;
McCaffrey, Timothy A.

Publication type:

Article

Breakpoint Surveyor: a pipeline for structural variant visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3121, doi. 10.1093/bioinformatics/btx362

By:

Wyczalkowski, Matthew A.;
Wylie, Kristine M.;
Song Cao;
McLellan, Michael D.;
Flynn, Jennifer;
Mo Huang;
Kai Ye;
Xian Fan;
Ken Chen;
Wendl, Michael C.;
Li Ding

Publication type:

Article

COMPASS: the COMPletely Arbitrary Sequence Simulator.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3101, doi. 10.1093/bioinformatics/btx347

By:

Low, Andrew;
Rodrigue, Nicolas;
Wong, Alex

Publication type:

Article

M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3011, doi. 10.1093/bioinformatics/btx338

By:

Zambrano-Vega, Cristian;
Nebro, Antonio J.;
García-Nieto, José;
Aldana-Montes, José F.

Publication type:

Article

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3003, doi. 10.1093/bioinformatics/btx336

By:

Wenxiu Ma;
Lin Yang;
Rohs, Remo;
Stafford Noble, William

Publication type:

Article

Predicting accurate contacts in thousands of Pfam domain families using PconsC3.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2859, doi. 10.1093/bioinformatics/btx332

By:

Michel, Mirco;
Skwark, Marcin J.;
Hurtado, David Menéndez;
Ekeberg, Magnus;
Elofsson, Arne

Publication type:

Article

A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy.

Published in:

Bioinformatics, 2017, v. 33, n. 17, p. 2675, doi. 10.1093/bioinformatics/btx296

By:

Dapeng Xiong;
Haipeng Gong;
Jianyang Zeng

Publication type:

Article

MetCirc: navigating mass spectral similarity in high-resolution MS/MS metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2419, doi. 10.1093/bioinformatics/btx159

By:

Naake, Thomas;
Gaquerel, Emmanuel

Publication type:

Article

NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2296, doi. 10.1093/bioinformatics/btx164

By:

Baoji He;
Mortuza, S. M.;
Yanting Wang;
Hong-Bin Shen;
Yang Zhang

Publication type:

Article

Kart: a divide-and-conquer algorithm for NGS read alignment.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2281, doi. 10.1093/bioinformatics/btx189

By:

Hsin-Nan Lin;
Wen-Lian Hsu

Publication type:

Article

The RNASeq-er API--a gateway to systematically updated analysis of public RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2218, doi. 10.1093/bioinformatics/btx143

By:

Petryszak, Robert;
Fonseca, Nuno A.;
Füllgrabe, Anja;
Huerta, Laura;
Keays, Maria;
Tang, Y. Amy;
Brazma, Alvis

Publication type:

Article

VCNet: vector-based gene co-expression network construction and its application to RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2173, doi. 10.1093/bioinformatics/btx131

By:

Zengmiao Wang;
Huaying Fang;
Leung-Sang Tang, Nelson;
Minghua Deng

Publication type:

Article

Identification of protein complexes by integrating multiple alignment of protein interaction networks.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1681, doi. 10.1093/bioinformatics/btx043

By:

Cheng-Yu Ma;
Yi-Ping Phoebe Chen;
Berger, Bonnie;
Chung-Shou Liao

Publication type:

Article

MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1730, doi. 10.1093/bioinformatics/btx036

By:

Fosso, B.;
Santamaria, M.;
D’Antonio, M.;
Lovero, D.;
Corrado, G.;
Vizza, E.;
Passaro, N.;
Garbuglia, A. R.;
Capobianchi, M. R.;
Crescenzi, M.;
Valiente, G.;
Pesole, G.

Publication type:

Article

Unrealistic phylogenetic trees may improve phylogenetic footprinting.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1639, doi. 10.1093/bioinformatics/btx033

By:

Nettling, Martin;
Treutler, Hendrik;
Cerquides, Jesus;
Grosse, Ivo

Publication type:

Article

A comprehensive quality control workflow for paired tumor-normal NGS experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1721, doi. 10.1093/bioinformatics/btx032

By:

Schroeder, Christopher M.;
Hilke, Franz J.;
Lōffler, Markus W.;
Bitzer, Michael;
Lenz, Florian;
Sturm, Marc

Publication type:

Article

Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1621, doi. 10.1093/bioinformatics/btx031

By:

Choudhury, Amrita Roy;
Tiejun Cheng;
Phan, Lon;
Bryant, Stephen H.;
Yanli Wang

Publication type:

Article

chainCleaner improves genome alignment specificity and sensitivity.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1596, doi. 10.1093/bioinformatics/btx024

By:

Suarez, Hernando G.;
Langer, Bjoern E.;
Ladde, Pradnya;
Hiller, Michael

Publication type:

Article

aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.

Published in:

2017

By:

Alonso, Arnald;
Lasseigne, Brittany N.;
Williams, Kelly;
Nielsen, Josh;
Ramaker, Ryne C.;
Hardigan, Andrew A.;
Johnston, Bobbi;
Roberts, Brian S.;
Cooper, Sara J.;
Marsal, Sara;
Myers, Richard M.

Publication type:

Product Review