Works matching DE "RNA-protein interactions"

Results: 931

Multisystem Symptoms in Myotonic Dystrophy Type 1: A Management and Therapeutic Perspective.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5350, doi. 10.3390/ijms26115350

By:

Kuntawala, Dhvani H.;
Vitorino, Rui;
Cruz, Ana C.;
Martins, Filipa;
Rebelo, Sandra

Publication type:

Article

Structural and dynamic impacts of single-atom disruptions to guide RNA interactions within the recognition lobe of Geobacillus stearothermophilus Cas9.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.99275

By:

Belato, Helen B.;
Knight, Alexa L.;
D'Ordine, Alexandra M.;
Pindi, Chinmai;
Zhiqiang Fan;
Jinping Luo;
Palermo, Giulia;
Jogl, Gerwald;
Lisi, George P.

Publication type:

Article

A protein-RNA specificity code enables targeted activation of an endogenous human transcript.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 8, p. 732, doi. 10.1038/nsmb.2847

By:

Campbell, Zachary T;
Valley, Cary T;
Wickens, Marvin

Publication type:

Article

Structural basis for protein-RNA recognition in telomerase.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 6, p. 507, doi. 10.1038/nsmb.2819

By:

Huang, Jing;
Brown, Andrew F;
Wu, Jian;
Xue, Jing;
Bley, Christopher J;
Rand, Dustin P;
Wu, Lijie;
Zhang, Rongguang;
Chen, Julian J-L;
Lei, Ming

Publication type:

Article

Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 4, p. 389, doi. 10.1038/nsmb.2785

By:

Nowak, Elżbieta;
Miller, Jennifer T;
Bona, Marion K;
Studnicka, Justyna;
Szczepanowski, Roman H;
Jurkowski, Jakub;
Le Grice, Stuart F J;
Nowotny, Marcin

Publication type:

Article

The RNA-binding protein repertoire of embryonic stem cells.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 9, p. 1122, doi. 10.1038/nsmb.2638

By:

Kwon, S Chul;
Yi, Hyerim;
Eichelbaum, Katrin;
Föhr, Sophia;
Fischer, Bernd;
You, Kwon Tae;
Castello, Alfredo;
Krijgsveld, Jeroen;
Hentze, Matthias W;
Kim, V Narry

Publication type:

Article

Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 735, doi. 10.1038/nsmb.2572

By:

Fabian, Marc R;
Frank, Filipp;
Rouya, Christopher;
Siddiqui, Nadeem;
Lai, Wi S;
Karetnikov, Alexey;
Blackshear, Perry J;
Nagar, Bhushan;
Sonenberg, Nahum

Publication type:

Article

Global analysis of yeast mRNPs.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 127, doi. 10.1038/nsmb.2468

By:

Mitchell, Sarah F;
Jain, Saumya;
She, Meipei;
Parker, Roy

Publication type:

Article

A complex network of factors with overlapping affinities represses splicing through intronic elements.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 36, doi. 10.1038/nsmb.2459

By:

Wang, Yang;
Xiao, Xinshu;
Zhang, Jianming;
Choudhury, Rajarshi;
Robertson, Alex;
Li, Kai;
Ma, Meng;
Burge, Christopher B;
Wang, Zefeng

Publication type:

Article

Structural basis for recognition of 5?-phosphotyrosine adducts by Tdp2.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1372, doi. 10.1038/nsmb.2423

By:

Shi, Ke;
Kurahashi, Kayo;
Gao, Rui;
Tsutakawa, Susan E;
Tainer, John A;
Pommier, Yves;
Aihara, Hideki

Publication type:

Article

Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 10, p. 1195, doi. 10.1038/nsmb.1893

By:

Lunde, Bradley M.;
Reichow, Steve L.;
Minkyu Kim;
Hyunsuk Suh;
Leeper, Thomas C.;
Fan Yang;
Mutschler, Hannes;
Buratowski, Stephen;
Meinhart, Anton;
Varani, Gabriele

Publication type:

Article

Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 962, doi. 10.1038/nsmb.1862

By:

Änkö, Minna-Liisa;
Morales, Lucia;
Henry, Ian;
Beyer, Andreas;
Neugebauer, Karla M.

Publication type:

Article

Structural insights into RNA processing by the human RISC-loading complex.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 11, p. 1148, doi. 10.1038/nsmb.1673

By:

Wang, Hong-Wei;
Noland, Cameron;
Siridechadilok, Bunpote;
Taylor, David W;
Ma, Enbo;
Felderer, Karin;
Doudna, Jennifer A;
Nogales, Eva

Publication type:

Article

Precursor-product discrimination by La protein during tRNA metabolism.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 4, p. 430, doi. 10.1038/nsmb.1573

By:

Bayfield, Mark A.;
Maraia, Richard J.

Publication type:

Article

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 2, p. 130, doi. 10.1038/nsmb.1545

By:

Yeo, Gene W;
Coufal, Nicole G;
Liang, Tiffany Y;
Peng, Grace E;
Fu, Xiang-Dong;
Gage, Fred H

Publication type:

Article

ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 1, p. 42, doi. 10.1038/nsmb.1535

By:

Maeder, Corina;
Kutach, Alan K;
Guthrie, Christine

Publication type:

Article

Crystal structures of the SAM-III/S<sub>MK</sub> riboswitch reveal the SAM-dependent translation inhibition mechanism.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 10, p. 1076, doi. 10.1038/nsmb.1494

By:

Changrui Lu;
Smith, Angela M.;
Fuchs, Ryan T.;
Ding, Fang;
Rajashankar, Kanagalaghatta;
Henkin, Tina M.;
Ailong Ke

Publication type:

Article

Research Highlights.

Published in:: Nature Structural & Molecular Biology, 2007, v. 14, n. 1, p. 14, doi. 10.1038/nsmb0107-14
Publication type:: Article

Cotranscriptional splicing regulation: it's not just about speed.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 11, p. 952, doi. 10.1038/nsmb1106-952

By:

Lynch, Kristen W.

Publication type:

Article

The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 11, p. 981, doi. 10.1038/nsmb1165

By:

Yang, Quansheng;
Jankowsky, Eckhard

Publication type:

Article

L(ou)sy miRNA targets?

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 9, p. 754, doi. 10.1038/nsmb0906-754

By:

Rajewsky, Nikolaus

Publication type:

Article

PUF proteins bind Pop2p to regulate messenger RNAs.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 533, doi. 10.1038/nsmb1100

By:

Goldstrohm, Aaron C;
Hook, Brad A;
Seay, Daniel J;
Wickens, Marvin

Publication type:

Article

Research Highlights.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 3, p. 194, doi. 10.1038/nsmb0306-194

By:

Hwa-ping Feng;
Konforti, Boyana;
Moore, Dorothy;
Schmidt, Tracy Smith

Publication type:

Article

The S<sub>MK</sub> box is a new SAM-binding RNA for translational regulation of SAM synthetase.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 3, p. 226, doi. 10.1038/nsmb1059

By:

Fuchs, Ryan T.;
Grundy, Frank J.;
Henkin, Tina M.

Publication type:

Article

Insights into SARS-CoV transcription and replication from the structure of the nsp7–nsp8 hexadecamer.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 11, p. 980, doi. 10.1038/nsmb999

By:

Yujia Zhai;
Fei Sun;
Xuemei Li;
Hai Pang;
Xiaoling Xu;
Bartlam, Mark;
Zihe Rao

Publication type:

Article

In Brief.

Published in:: Nature Reviews Microbiology, 2008, v. 6, n. 10, p. 712, doi. 10.1038/nrmicro2004
Publication type:: Article

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 8, p. 613, doi. 10.1038/nrmicro1932

By:

Görke, Boris;
Stülke, Jörg

Publication type:

Article

Attaining fluency in bioinformatics-the gremlins are coming!

Published in:

2012

By:

Albertini, David

Publication type:

Editorial

Chemically Modified Poly(A) Analogs Targeting PABP: Structure Activity Relationship and Translation Inhibitory Properties.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 42, p. 1, doi. 10.1002/chem.202201115

By:

Perzanowska, Olga;
Smietanski, Miroslaw;
Jemielity, Jacek;
Kowalska, Joanna

Publication type:

Article

Engineering Specificity Changes on a RanBP2 Zinc Finger that Binds Single-Stranded RNA.

Published in:

Angewandte Chemie, 2014, v. 126, n. 30, p. 7982, doi. 10.1002/ange.201402980

By:

Vandevenne, Marylène;
O'Connell, Mitchell R.;
Helder, Stephanie;
Shepherd, Nicholas E.;
Matthews, Jacqueline M.;
Kwan, Ann H.;
Segal, David J.;
Mackay, Joel P.

Publication type:

Article

Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii.

Published in:

Journal of Biological Physics, 2012, v. 38, n. 3, p. 449, doi. 10.1007/s10867-012-9264-x

By:

Heiland, Ines;
Bodenstein, Christian;
Hinze, Thomas;
Weisheit, Olga;
Ebenhoeh, Oliver;
Mittag, Maria;
Schuster, Stefan

Publication type:

Article

Superresolution imaging of transcription units on newt lampbrush chromosomes.

Published in:

Chromosome Research, 2012, v. 20, n. 8, p. 1009, doi. 10.1007/s10577-012-9306-z

By:

Kaufmann, Rainer;
Cremer, Christoph;
Gall, Joseph

Publication type:

Article

Subnuclear targeting of the RNA-binding motif protein RBM6 to splicing speckles and nascent transcripts.

Published in:

Chromosome Research, 2010, v. 18, n. 8, p. 851, doi. 10.1007/s10577-010-9170-7

By:

Heath, Emma;
Sablitzky, Fred;
Morgan, Garry

Publication type:

Article

Mutations in the AUH gene cause 3-methylglutaconic aciduria type I (Communicated by Mark H. Paalman).

Published in:

Human Mutation, 2003, v. 21, n. 4, p. 401, doi. 10.1002/humu.10202

By:

T.B. Nga Ly;
Verena Peters;
K. Michael Gibson;
Michael Liesert;
Wolfgang Buckel;
Bridget Wilcken;
Kevin Carpenter;
Regina Ensenauer;
Georg F. Hoffmann;
Matthias Mack

Publication type:

Article

Synthesis and aggregation properties of a novel enzymatically resistant nucleoamino acid.

Published in:

Amino Acids, 2012, v. 43, n. 4, p. 1465, doi. 10.1007/s00726-012-1219-9

By:

Roviello, Giovanni;
Mottola, Anna;
Musumeci, Domenica;
Bucci, Enrico;
Pedone, Carlo

Publication type:

Article

PRINTR: Prediction of RNA binding sites in proteins using SVM and profiles.

Published in:

Amino Acids, 2008, v. 35, n. 2, p. 295, doi. 10.1007/s00726-007-0634-9

By:

Y. Wang;
Z. Xue;
G. Shen;
J. Xu

Publication type:

Article

CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 566, doi. 10.1093/bioinformatics/btw653

By:

Shah, Ankeeta;
Yingzhi Qian;
Weyn-Vanhentenryck, Sebastien M.;
Chaolin Zhang

Publication type:

Article

RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i351, doi. 10.1093/bioinformatics/btw259

By:

Orenstein, Yaron;
Yuhao Wang;
Berger, Bonnie

Publication type:

Article

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 10, p. 1527, doi. 10.1093/bioinformatics/btw003

By:

Stražar, Martin;
Žitnik, Marinka;
Zupan, Blaž;
Ule, Jernej;
Curk, Tomaž

Publication type:

Article

Towards a piRNA prediction using multiple kernel fusion and support vector machine.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i364, doi. 10.1093/bioinformatics/btu441

By:

Brayet, Jocelyn;
Zehraoui, Farida;
Jeanson-Leh, Laurence;
Israeli, David;
Tahi, Fariza

Publication type:

Article

lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs.

Published in:

2014

By:

Park, Charny;
Yu, Namhee;
Choi, Ikjung;
Kim, Wankyu;
Lee, Sanghyuk

Publication type:

Product Review

catRAPID omics: a web server for large-scale prediction of protein–RNA interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2928, doi. 10.1093/bioinformatics/btt495

By:

Agostini, Federico;
Zanzoni, Andreas;
Klus, Petr;
Marchese, Domenica;
Cirillo, Davide;
Tartaglia, Gian Gaetano

Publication type:

Article

Analysis of base-pairing probabilities of RNA molecules involved in protein–RNA interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2524, doi. 10.1093/bioinformatics/btt453

By:

Iwakiri, Junichi;
Kameda, Tomoshi;
Asai, Kiyoshi;
Hamada, Michiaki

Publication type:

Article

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships.

Published in:

Bioinformatics, 2013, v. 29, n. 7, p. 953, doi. 10.1093/bioinformatics/btt062

By:

Kosinski, Jan;
Barbato, Alessandro;
Tramontano, Anna

Publication type:

Article

RIP-chip enrichment analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 77, doi. 10.1093/bioinformatics/bts631

By:

Erhard, Florian;
Dölken, Lars;
Zimmer, Ralf

Publication type:

Article

Site identification in high-throughput RNA–protein interaction data.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3013, doi. 10.1093/bioinformatics/bts569

By:

Uren, Philip J.;
Bahrami-Samani, Emad;
Burns, Suzanne C.;
Qiao, Mei;
Karginov, Fedor V.;
Hodges, Emily;
Hannon, Gregory J.;
Sanford, Jeremy R.;
Penalva, Luiz O. F.;
Smith, Andrew D.

Publication type:

Article

BIPA: a database for protein-nucleic acid interaction in 3D structures.

Published in:

Bioinformatics, 2009, v. 25, n. 12, p. 1559, doi. 10.1093/bioinformatics/btp243

By:

Semin Lee;
Tom L Blundell

Publication type:

Article

Protein function annotation from sequence: prediction of residues interacting with RNA.

Published in:

Bioinformatics, 2009, v. 25, n. 12, p. 1492, doi. 10.1093/bioinformatics/btp257

By:

R. V. Spriggs;
Y. Murakami;
H. Nakamura;
S. Jones

Publication type:

Article

A step forward in the identification of compounds interfering with the Embryonic Lethal Abnormal Vision (ELAV) protein - RNA complexes.

Published in:

BioDiscovery, 2017, p. 1, doi. 10.3897/biodiscovery.20.e14670

By:

Volpe, Serena Della;
Rossi, Daniela;
Vasile, Francesca;
Potenza, Donatella;
Amadio, Marialaura;
Pascale, Alessia;
Collina, Simona

Publication type:

Article

Knocking Down Transport: Applications of RNA Interference in The Study of Drug Transport Proteins.

Published in:

Drug Metabolism Reviews, 2005, v. 37, n. 4, p. 705, doi. 10.1080/03602530500364098

By:

Tian, Xianbin;
Zhang, Peijin;
Zamek-Gliszczynski, Maciej J.;
Brouwer, Kim L. R.

Publication type:

Article