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Structural relation matching: an algorithm to identify structural patterns into RNAs and their interactions.
- Published in:
- Journal of Integrative Bioinformatics, 2021, v. 18, n. 2, p. 111, doi. 10.1515/jib-2020-0039
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- Publication type:
- Article
Retraction Note: RNAi targeting CXCR4 inhibits proliferation and invasion of esophageal carcinoma cells.
- Published in:
- Diagnostic Pathology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13000-019-0828-y
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- Publication type:
- Article
Discovering functional impacts of miRNAs in cancers using a causal deep learning model.
- Published in:
- BMC Medical Genomics, 2018, v. 11, n. 6, p. N.PAG, doi. 10.1186/s12920-018-0432-0
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- Publication type:
- Article
Modifications in small nuclear RNAs and their roles in spliceosome assembly and function.
- Published in:
- Biological Chemistry, 2018, v. 399, n. 11, p. 1265, doi. 10.1515/hsz-2018-0205
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- Publication type:
- Article
Distribution of Human Immunodeficiency Virus (HIV) Ribonucleic Acid in Cerebrospinal Fluid and Blood Is Linked to CD4/CD8 Ratio During Acute HIV.
- Published in:
- 2018
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- Publication type:
- journal article
Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006341
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- Publication type:
- Article
Towards Long-Range RNA Structure Prediction in Eukaryotic Genes.
- Published in:
- Genes, 2018, v. 9, n. 6, p. 302, doi. 10.3390/genes9060302
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- Publication type:
- Article
RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
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- Bioinformatics, 2018, v. 34, n. 3, p. 453, doi. 10.1093/bioinformatics/btx615
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- Publication type:
- Article
ASSA: Fast identification of statistically significant interactions between long RNAs.
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- Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 1, p. -1, doi. 10.1142/S0219720018400012
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- Publication type:
- Article
The Expressed MicroRNA--mRNA Interactions of Toxoplasma gondii.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2017.02630
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- Publication type:
- Article
RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.
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- Bioinformatics, 2017, v. 33, n. 17, p. 2666, doi. 10.1093/bioinformatics/btx287
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- Publication type:
- Article
Rotavirus Genomic RNA Complex Forms via Specific RNA-RNA Interactions: Disruption of RNA Complex Inhibits Virus Infectivity.
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- Viruses (1999-4915), 2017, v. 9, n. 7, p. 167, doi. 10.3390/v9070167
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- Publication type:
- Article
Computational prediction of lncRNA-mRNA interactionsby integrating tissue specificity in human transcriptome.
- Published in:
- Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0183-4
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- Publication type:
- Article
Detecting RNA-RNA interactions in E. coli using a modified CLASH method.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3725-3
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- Publication type:
- Article
A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life.
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- Bioinformatics, 2017, v. 33, n. 7, p. 988, doi. 10.1093/bioinformatics/btw728
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- Publication type:
- Article
Host Recognition Responses of Western (Family: Chrysomelidae) Corn Rootworm Larvae to RNA Interference and Bt Corn.
- Published in:
- Journal of Insect Science, 2017, v. 17, n. 2, p. 1, doi. 10.1093/jisesa/iex022
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- Publication type:
- Article
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.
- Published in:
- BMC Cancer, 2017, v. 17, p. 1, doi. 10.1186/s12859-017-1557-4
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- Publication type:
- Article
An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.
- Published in:
- Bioinformatics, 2017, v. 33, n. 2, p. 202, doi. 10.1093/bioinformatics/btw603
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- Publication type:
- Article
Israeli Acute Paralysis Virus Infection Leads to an Enhanced RNA Interference Response and Not Its Suppression in the Bumblebee Bombus terrestris.
- Published in:
- Viruses (1999-4915), 2016, v. 8, n. 12, p. 334, doi. 10.3390/v8120334
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- Publication type:
- Article
tRNA Shifts the G-quadruplex-Hairpin Conformational Equilibrium in RNA towards the Hairpin Conformer.
- Published in:
- Angewandte Chemie International Edition, 2016, v. 55, n. 46, p. 14315, doi. 10.1002/anie.201605431
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- Publication type:
- Article
Prediction of conserved long-range RNA-RNA interactions in full viral genomes.
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- Bioinformatics, 2016, v. 32, n. 19, p. 2928, doi. 10.1093/bioinformatics/btw323
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- Publication type:
- Article
Viral RNA switch mediates the dynamic control of flavivirus replicase recruitment by genome cyclization.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.17636
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- Publication type:
- Article
VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability.
- Published in:
- PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0163454
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- Publication type:
- Article
Comprehensive Transcriptome Analyses of the Fructose-Fed Syrian Golden Hamster Liver Provides Novel Insights into Lipid Metabolism.
- Published in:
- PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0162402
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- Publication type:
- Article
Exaptive origins of regulated mRNA decay in eukaryotes.
- Published in:
- BioEssays, 2016, v. 38, n. 9, p. 830, doi. 10.1002/bies.201600100
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- Publication type:
- Article
Identification of microRNA-mRNA interactions in atrial fibrillation using microarray expression profiles and bioinformatics analysis.
- Published in:
- Molecular Medicine Reports, 2016, v. 13, n. 6, p. 4535, doi. 10.3892/mmr.2016.5106
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- Publication type:
- Article
Efficient Translation of Pelargonium line pattern virus RNAs Relies on a TED-Like 3´-Translational Enhancer that Communicates with the Corresponding 5´-Region through a Long-Distance RNA-RNA Interaction.
- Published in:
- PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0152593
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- Publication type:
- Article
AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 1033, doi. 10.1093/bioinformatics/btv682
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- Publication type:
- Article
iDoRNA: An Interacting Domain-based Tool for Designing RNA-RNA Interaction Systems.
- Published in:
- 2016
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- Publication type:
- Product Review
lncRNA-RNA Interactions across the Human Transcriptome.
- Published in:
- PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150353
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- Publication type:
- Article
Comprehensive prediction of lncRNA–RNA interactions in human transcriptome.
- Published in:
- BMC Genomics, 2016, v. 17, p. 153, doi. 10.1186/s12864-015-2307-5
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- Publication type:
- Article
New Perspectives on DNA and RNA Triplexes As Effectors of Biological Activity.
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- PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005696
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- Publication type:
- Article
Disruption of Specific RNA-RNA Interactions in a Double-Stranded RNA Virus Inhibits Genome Packaging and Virus Infectivity.
- Published in:
- PLoS Pathogens, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.ppat.1005321
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- Publication type:
- Article
S<sub>i</sub>M<sub>i</sub>S<sub>no</sub>RNA: Collection of siRNA, miRNA, and snoRNA database for RNA interference / S<sub>i</sub>M<sub>i</sub>S<sub>no</sub>RNA: RNA Interferansı için siRNA, miRNA ve snoRNA veritabanında depolanan siRNA, miRNA, and snoRNA koleksiyonları
- Published in:
- Turkish Journal of Biochemistry / Turk Biyokimya Dergisi, 2015, v. 40, n. 6, p. 524, doi. 10.1515/tjb-2015-0044
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- Publication type:
- Article
MicroRNA target prediction using thermodynamic and sequence curves.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-1933-2
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- Publication type:
- Article
Crystal structure of the Varkud satellite ribozyme.
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- Nature Chemical Biology, 2015, v. 11, n. 11, p. 840, doi. 10.1038/nchembio.1929
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- Publication type:
- Article
Translational arrest by a prokaryotic signal recognition particle is mediated by RNA interactions.
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- Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 767, doi. 10.1038/nsmb.3086
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- Publication type:
- Article
New in silico approach to assessing RNA secondary structures with non-canonical base pairs.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0718-6
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- Publication type:
- Article
LncTar: a tool for predicting the RNA targets of long noncoding RNAs.
- Published in:
- Briefings in Bioinformatics, 2015, v. 16, n. 5, p. 806, doi. 10.1093/bib/bbu048
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- Publication type:
- Article
Principles of miRNA-mRNA interactions: beyond sequence complementarity.
- Published in:
- Cellular & Molecular Life Sciences, 2015, v. 72, n. 16, p. 3127, doi. 10.1007/s00018-015-1922-2
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- Publication type:
- Article
Identification of the proliferative effect of Smad2 and 3 in the TGF β2/Smad signaling pathway using RNA interference in a glioma cell line.
- Published in:
- Molecular Medicine Reports, 2015, v. 12, n. 2, p. 1824, doi. 10.3892/mmr.2015.3614
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- Publication type:
- Article
Proteomic analysis reveals that COP9 signalosome complex subunit 7A (CSN7A) is essential for the phase transition of migratory locust.
- Published in:
- Scientific Reports, 2015, p. 12542, doi. 10.1038/srep12542
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- Publication type:
- Article
Re-thinking miRNA-mRNA interactions: Intertwining issues confound target discovery.
- Published in:
- BioEssays, 2015, v. 37, n. 4, p. 379, doi. 10.1002/bies.201400191
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- Publication type:
- Article
Neighboring Gene Regulation by Antisense Long Non-Coding RNAs.
- Published in:
- International Journal of Molecular Sciences, 2015, v. 16, n. 2, p. 3251, doi. 10.3390/ijms16023251
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- Publication type:
- Article
Effects of small interfering RNA interference of connexin 37 on subcutaneous gastric tumours in mice.
- Published in:
- Molecular Medicine Reports, 2014, v. 10, n. 6, p. 2955, doi. 10.3892/mmr.2014.2609
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- Publication type:
- Article
Perspectives and Challenges of Cell-Penetrating Peptides in Effective siRNA Delivery.
- Published in:
- Nano Life, 2014, v. 4, n. 4, p. -1, doi. 10.1142/S1793984414410165
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- Publication type:
- Article
Hunting the Needle in the Haystack: A Guide to Obtain Biologically Meaningful MicroRNA Targets.
- Published in:
- International Journal of Molecular Sciences, 2014, v. 15, n. 11, p. 20266, doi. 10.3390/ijms151120266
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- Publication type:
- Article
A Synthetic Sandalwood Odorant Induces Wound-Healing Processes in Human Keratinocytes via the Olfactory Receptor OR2AT4.
- Published in:
- Journal of Investigative Dermatology, 2014, v. 134, n. 11, p. 2823, doi. 10.1038/jid.2014.273
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- Publication type:
- Article
A novel measurement of allele discrimination for assessment of allele-specific silencing by RNA interference.
- Published in:
- Molecular Biology Reports, 2014, v. 41, n. 11, p. 7115, doi. 10.1007/s11033-014-3586-7
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- Publication type:
- Article
Thiophenyl-substituted triazolyl-thione l-alanine: asymmetric synthesis, aggregation and biological properties.
- Published in:
- Amino Acids, 2014, v. 46, n. 10, p. 2325, doi. 10.1007/s00726-014-1782-3
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- Publication type:
- Article