Works matching DE "RNA world hypothesis"

Results: 70

Fine-grained parallelism accelerating for RNA secondary structure prediction with pseudoknots based on FPGA.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 3, p. 1450008-1, doi. 10.1142/S0219720014500085

By:

Fei Xia;
Guoqing Jin

Publication type:

Article

Mechanism of Human Influenza Virus RNA Persistence and Virion Survival in Feces: Mucus Protects Virions From Acid and Digestive Juices.

Published in:

2017

By:

Ryohei Hirose;
Takaaki Nakaya;
Yuji Naito;
Tomo Daidoji;
Yohei Watanabe;
Hiroaki Yasuda;
Hideyuki Konishi;
Yoshito Itoh;
Hirose, Ryohei;
Nakaya, Takaaki;
Naito, Yuji;
Daidoji, Tomo;
Watanabe, Yohei;
Yasuda, Hiroaki;
Konishi, Hideyuki;
Itoh, Yoshito

Publication type:

journal article

Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 9, p. 679, doi. 10.1038/nsmb.3073

By:

Jones, Christopher P;
Ferré-D'Amaré, Adrian R

Publication type:

Article

The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 10, p. 919, doi. 10.1038/nsmb.2893

By:

Lemay, Jean-François;
Larochelle, Marc;
Marguerat, Samuel;
Atkinson, Sophie;
Bähler, Jürg;
Bachand, François

Publication type:

Article

Autocatalytic Sets and RNA Secondary Structure.

Published in:

Journal of Molecular Evolution, 2017, v. 84, n. 4, p. 153, doi. 10.1007/s00239-017-9787-7

By:

Hordijk, Wim

Publication type:

Article

Purine Biosynthetic Intermediate-Containing Ribose-Phosphate Polymers as Evolutionary Precursors to RNA.

Published in:

Journal of Molecular Evolution, 2014, v. 79, n. 3/4, p. 91, doi. 10.1007/s00239-014-9640-1

By:

Bernhardt, Harold;
Sandwick, Roger

Publication type:

Article

RNA expression signatures and posttranscriptional regulation in diabetic nephropathy.

Published in:

Nephrology Dialysis Transplantation, 2015, v. 30, p. iv35, doi. 10.1093/ndt/gfv079

By:

Rudnicki, Michael;
Beckers, Anneleen;
Neuwirt, Hannes;
Vandesompele, Jo

Publication type:

Article

In vitro evaluation of optimized liposomes for delivery of small interfering RNA.

Published in:

Journal of Liposome Research, 2014, v. 24, n. 4, p. 270, doi. 10.3109/08982104.2014.907306

By:

Yang, Tianzhi;
Bantegui, Tracy;
Pike, Kaitlynn;
Bloom, Raymond;
Phipps, Roger;
Bai, Shuhua

Publication type:

Article

IsoDOT Detects Differential RNA-Isoform Expression/Usage With Respect to a Categorical or Continuous Covariate With High Sensitivity and Specificity.

Published in:

Journal of the American Statistical Association, 2015, v. 110, n. 511, p. 975, doi. 10.1080/01621459.2015.1040880

By:

Sun, Wei;
Liu, Yufeng;
Crowley, James J.;
Chen, Ting-Huei;
Zhou, Hua;
Chu, Haitao;
Huang, Shunping;
Kuan, Pei-Fen;
Li, Yuan;
Miller, Darla;
Shaw, Ginger;
Wu, Yichao;
Zhabotynsky, Vasyl;
McMillan, Leonard;
Zou, Fei;
Sullivan, Patrick F.;
De Villena, Fernando Pardo-Manuel

Publication type:

Article

Genome Rearrangements Can Make and Break Small RNA Genes.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 2, p. 557, doi. 10.1093/gbe/evv009

By:

Raghavan, Rahul;
Kacharia, Fenil R.;
Millar, Jess A.;
Sislak, Christine D.;
Ochman, Howard

Publication type:

Article

Efficient extraction of small and large RNAs in bacteria for excellent total RNA sequencing and comprehensive transcriptome analysis.

Published in:

BMC Research Notes, 2015, v. 8, p. 1, doi. 10.1186/s13104-015-1726-3

By:

Heera, Rajandas;
Sivachandran, Parimannan;
Chinni, Suresh V.;
Mason, Joanne;
Croft, Larry;
Ravichandran, Manickam;
Lee Su Yin

Publication type:

Article

Leishmania braziliensis replication protein A subunit 1: molecular modelling, protein expression and analysis of its affinity for both DNA and RNA.

Published in:

Parasites & Vectors, 2014, v. 7, n. 1, p. 454, doi. 10.1186/s13071-014-0573-8

By:

Nocua, Paola A.;
Ramirez, Cesar A.;
Barreto, George E.;
González, Janneth;
Requena, José M.;
Puerta, Concepción J.

Publication type:

Article

Long non-coding RNA MALAT1 promotes tumour growth and metastasis in colorectal cancer through binding to SFPQ and releasing oncogene PTBP2 from SFPQ/PTBP2 complex.

Published in:

British Journal of Cancer, 2014, v. 111, n. 4, p. 736, doi. 10.1038/bjc.2014.383

By:

Ji, Q;
Zhang, L;
Liu, X;
Zhou, L;
Wang, W;
Han, Z;
Sui, H;
Tang, Y;
Wang, Y;
Liu, N;
Ren, J;
Hou, F;
Li, Q

Publication type:

Article

Fighting against kidney diseases with small interfering RNA: opportunities and challenges.

Published in:

Journal of Translational Medicine, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12967-015-0387-2

By:

Cheng Yang;
Chao Zhang;
Zitong Zhao;
Tongyu Zhu;
Bin Yang

Publication type:

Article

Determining multiallelic complex copy number and sequence variation from high coverage exome sequencing data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2123-y

By:

Forni, Diego;
Martin, Diana;
Abujaber, Razan;
Sharp, Andrew J.;
Sironi, Manuela;
Hollox, Edward J.

Publication type:

Article

A bioinformatic survey of RNA-binding proteins in Plasmodium.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2092-1

By:

Niranjan Reddy, B. P.;
Shrestha, Sony;
Hart, Kevin J.;
Xiaoying Liang;
Kemirembe, Karen;
Liwang Cui;
Lindner, Scott E.

Publication type:

Article

RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 168, doi. 10.1186/s12864-014-1198-1

By:

Garcia-Seco, Daniel D.;
Zhang, Yang Y.;
Gutierrez-Mañero, Francisco Javier F. J.;
Martin, Cathie C.;
Ramos-Solano, Beatriz B.

Publication type:

Article

High-throughput RNA sequencing reveals the effects of 2,2',4,4' - tetrabromodiphenyl ether on retina and bone development of zebrafish larvae.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 120, doi. 10.1186/s12864-014-1194-5

By:

Ting Xu;
Jing Zhao;
Daqiang Yin;
Qingshun Zhao;
Bingzhi Dong

Publication type:

Article

Evolution of RLSB, a nuclear-encoded S1 domain RNA binding protein associated with post-transcriptional regulation of plastid-encoded rbcL mRNA in vascular plants.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0713-1

By:

Yerramsetty, Pradeep;
Stata, Matt;
Siford, Rebecca;
Sage, Tammy L.;
Sage, Rowan F.;
Gane Ka-Shu Wong;
Albert, Victor A.;
Berry, James O.

Publication type:

Article

The Old and New RNA World.

Published in:

Acta Societatis Botanicorum Poloniae, 2014, v. 83, n. 4, p. 441, doi. 10.5586/asbp.2014.035

By:

Szweykowska-Kulińska, Zofia

Publication type:

Article

Micro RNA-410 functions as a tumor suppressor by targeting angiotensin II type 1 receptor in pancreatic cancer.

Published in:

IUBMB Life, 2015, v. 67, n. 1, p. 42, doi. 10.1002/iub.1342

By:

Guo, Rende;
Gu, Jianhua;
Zhang, Zhibin;
Wang, Yi;
Gu, Chuan

Publication type:

Article

Strand-Biased Formation of G-Quadruplexes in DNA Duplexes Transcribed with T7 RNA Polymerase.

Published in:

Angewandte Chemie International Edition, 2015, v. 54, n. 31, p. 8992, doi. 10.1002/anie.201503648

By:

Liu, Jia-quan;
Xiao, Shan;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

Viral blips during suppressive antiretroviral treatment are associated with high baseline HIV-1 RNA levels.

Published in:

2016

By:

Sörstedt, Erik;
Nilsson, Staffan;
Blaxhult, Anders;
Gisslén, Magnus;
Flamholc, Leo;
Sönnerborg, Anders;
Yilmaz, Aylin

Publication type:

journal article

Changing expression profiles of long non-coding RNAs, mRNAs and circular RNAs in ethylene glycol-induced kidney calculi rats.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5052-8

By:

Cao, Yanan;
Gao, Xiaowei;
Yang, Yue;
Ye, Zhi;
Wang, E.;
Dong, Zhitao

Publication type:

Article

Micro RNA 26a prolongs skin allograft survival and promotes regulatory T cell expansion in mice.

Published in:

Transplant International, 2015, v. 28, n. 10, p. 1143, doi. 10.1111/tri.12590

By:

Xie, Feng;
Chai, Jiake;
Zhang, Zhengwen;
Hu, Quan;
Ma, Tengxiao

Publication type:

Article

Circular RNA Expression Profile of Pancreatic Ductal Adenocarcinoma Revealed by Microarray.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2016, v. 40, n. 6, p. 1334, doi. 10.1159/000453186

By:

Li, Haimin;
Hao, Xiaokun;
Wang, Huimin;
Liu, Zhengcai;
He, Yong;
Pu, Meng;
Zhang, Hongtao;
Yu, Hengchao;
Duan, Juanli;
Qu, Shibin

Publication type:

Article

Correlation of circular RNA abundance with proliferation - exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues.

Published in:

Scientific Reports, 2015, p. 8057, doi. 10.1038/srep08057

By:

Bachmayr-Heyda, Anna;
Reiner, Agnes T.;
Auer, Katharina;
Sukhbaatar, Nyamdelger;
Aust, Stefanie;
Bachleitner-Hofmann, Thomas;
Mesteri, Ildiko;
Grunt, Thomas W.;
Zeillinger, Robert;
Pils, Dietmar

Publication type:

Article

Efficient HIV-1 inhibition by a 16 nt-long RNA aptamer designed by combining in vitro selection and in silico optimisation strategies.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06242

By:

Francisco J. Sánchez-Luque;
Stich, Michael;
Manrubia, Susanna;
Briones, Carlos;
Berzal-Herranz, Alfredo

Publication type:

Article

G-quadruplexes formation in the 5’UTRs of mRNAs associated with colorectal cancer pathways.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0208363

By:

Jodoin, Rachel;
Perreault, Jean-Pierre

Publication type:

Article

Profiling of Ribose Methylations in RNA by High-Throughput Sequencing.

Published in:

Angewandte Chemie, 2015, v. 127, n. 2, p. 461, doi. 10.1002/ange.201408362

By:

Birkedal, Ulf;
Christensen ‐ Dalsgaard, Mikkel;
Krogh, Nicolai;
Sabarinathan, Radhakrishnan;
Gorodkin, Jan;
Nielsen, Henrik

Publication type:

Article

Ligand-Detected Relaxation Dispersion NMR Spectroscopy: Dynamics of preQ<sub>1</sub>-RNA Binding.

Published in:

Angewandte Chemie, 2015, v. 127, n. 2, p. 570, doi. 10.1002/ange.201409779

By:

Moschen, Thomas;
Wunderlich, Christoph Hermann;
Spitzer, Romana;
Levic, Jasmin;
Micura, Ronald;
Tollinger, Martin;
Kreutz, Christoph

Publication type:

Article

LincIN, a novel NF90-binding long non-coding RNA, is overexpressed in advanced breast tumors and involved in metastasis.

Published in:

2017

By:

Zhengyu Jiang;
Slater, Carolyn M.;
Yan Zhou;
Devarajan, Karthik;
Ruth, Karen J.;
Li, Yueran;
Cai, Kathy Q.;
Daly, Mary;
Xiaowei Chen;
Jiang, Zhengyu;
Zhou, Yan;
Chen, Xiaowei

Publication type:

journal article

Long non-coding RNA H19 regulates FOXM1 expression by competitively binding endogenous miR-42-3p in gallbladder cancer.

Published in:

Journal of Experimental & Clinical Cancer Research (17569966), 2016, v. 35, p. 1, doi. 10.1186/s13046-016-0436-6

By:

Shou-Hua Wang;
Fei Ma;
Zhao-hui Tang;
Xiao-Cai Wu;
Qiang Cai;
Ming-Di Zhang;
Ming-Zhe Weng;
Di Zhou;
Jian-Dong Wang;
Zhi-Wei Quan1

Publication type:

Article

Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs.

Published in:

PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0176458

By:

Chen, Ze;
Sun, Yu;
Yang, Xiaojun;
Wu, Zhenfeng;
Guo, Kaifei;
Niu, Xiaoran;
Wang, Qingsong;
Ruan, Jishou;
Bu, Wenjun;
Gao, Shan

Publication type:

Article

Fractal polymer globules: A new insight on prebiological evolution.

Published in:

Geochemistry International, 2014, v. 52, n. 13, p. 1252, doi. 10.1134/S0016702914130023

By:

Avetisov, V.;
Nechaev, S.

Publication type:

Article

Antisense RNA foci in the motor neurons of C9ORF72-ALS patients are associated with TDP-43 proteinopathy.

Published in:

Acta Neuropathologica, 2015, v. 130, n. 1, p. 63, doi. 10.1007/s00401-015-1429-9

By:

Cooper-Knock, Johnathan;
Higginbottom, Adrian;
Stopford, Matthew;
Highley, J.;
Ince, Paul;
Wharton, Stephen;
Pickering-Brown, Stuart;
Kirby, Janine;
Hautbergue, Guillaume;
Shaw, Pamela

Publication type:

Article

The RNA World: molecular cooperation at the origins of life.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 1, p. 7, doi. 10.1038/nrg3841

By:

Higgs, Paul G.;
Lehman, Niles

Publication type:

Article

RNA: New CLIP pipeline improves interactome discovery.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 1, p. 2, doi. 10.1038/nrg3877

By:

Koch, Linda

Publication type:

Article

The Kiss Switch Brings Inactive R3C Ligase Ribozyme Back to Life.

Published in:

Biology (2079-7737), 2018, v. 7, n. 1, p. 7, doi. 10.3390/biology7010007

By:

Tanizawa, Kana;
Uchida, Sayuri;
Kurihara, Eri;
Umehara, Takuya;
Tamura, Koji

Publication type:

Article

Picornaviruses and nuclear functions: targeting a cellular compartment distinct from the replication site of a positive-strand RNA virus.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00594

By:

Decheng Yang;
Pevear, Daniel C.;
Belov, George A.

Publication type:

Article

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0492-5

By:

Mbandi, Stanley Kimbung;
Hesse, Uljana;
van Heusden, Peter;
Christoffels, Alan

Publication type:

Article

Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0470-y

By:

Comoglio, Federico;
Sievers, Cem;
Paro, Renato

Publication type:

Article

Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0464-9

By:

Yang Song;
Lei Hua;
Shapiro, Bruce A.;
Wang, Jason T. L.

Publication type:

Article

meRanTK: methylated RNA analysis ToolKit.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 782, doi. 10.1093/bioinformatics/btv647

By:

Rieder, Dietmar;
Amort, Thomas;
Kugler, Elisabeth;
Lusser, Alexandra;
Trajanoski, Zlatko

Publication type:

Article

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 593, doi. 10.1093/bioinformatics/btu647

By:

Han, Bo W.;
Wang, Wei;
Zamore, Phillip D.;
Weng, Zhiping

Publication type:

Article

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 25, doi. 10.1093/bioinformatics/btu608

By:

Li, Liping;
Chen, Enguo;
Yang, Chun;
Zhu, Jun;
Jayaraman, Pushkala;
De Pons, Jeffrey;
Kaczorowski, Catherine C.;
Jacob, Howard J.;
Greene, Andrew S.;
Hodges, Matthew R.;
Cowley, Allen W.;
Liang, Mingyu;
Xu, Haiming;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p.

Published in:

Journal of Cell Biology, 2015, v. 211, n. 6, p. 1121, doi. 10.1083/jcb.201503135

By:

Smith, Carlas;
Lari, Azra;
Derrer, Carina Patrizia;
Ouwehand, Anette;
Rossouw, Ammeret;
Huisman, Maximiliaan;
Dange, Thomas;
Hopman, Mark;
Joseph, Aviva;
Zenklusen, Daniel;
Weis, Karsten;
Grunwald, David;
Montpetit, Ben

Publication type:

Article

Non-coding RNA: a new frontier in regulatory biology.

Published in:

National Science Review, 2014, v. 1, n. 2, p. 190, doi. 10.1093/nsr/nwu008

By:

Xiang-Dong Fu

Publication type:

Article

What RNA World? Why a Peptide/RNA Partnership Merits Renewed Experimental Attention.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 294, doi. 10.3390/life5010294

By:

Carter Jr., Charles W.

Publication type:

Article

RNA Synthesis by in Vitro Selected Ribozymes for Recreating an RNA World.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 247, doi. 10.3390/life5010247

By:

Martin, Lyssa L.;
Unrau, Peter J.;
Müller, Ulrich F.

Publication type:

Article