Works matching DE "RNA polymerases"

Results: 5000

The host protein CCT8 interacts with PB2 protein of H9N2 AIV and facilitates virus replication.

Published in:

Avian Pathology, 2025, v. 54, n. 4, p. 530, doi. 10.1080/03079457.2025.2476511

By:

Cai, Yiqin;
Liu, Ye;
Yin, Guihu;
Hu, Jianing;
Gao, Zichen;
Guo, Xinyu;
Wang, Ruiying;
Zhong, Meng;
Liu, Qingtao;
Feng, Xiuli

Publication type:

Article

Cryo-EM uncovers a sequential mechanism for RNA polymerase I pausing and stalling at abasic DNA lesions.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60536-4

By:

Santos-Aledo, Alicia;
Plaza-Pegueroles, Adrián;
Sanz-Murillo, Marta;
Ruiz, Federico M.;
Hou, Peini;
Xu, Jun;
Gil-Carton, David;
Wang, Dong;
Fernández-Tornero, Carlos

Publication type:

Article

pPromoter-FCGR: Deep Learning on Frequency Chaos Game Representation for Prediction of DNA Promoters.

Published in:

Journal of Engineering & Smart Systems, 2025, v. 13, n. 2, p. 61, doi. 10.21541/apjess.1659716

By:

ŞILBIR, Gülbahar Merve

Publication type:

Article

Hydroethanolic extract of Schinus terebinthifolia as a promising source of anti-influenza agents: Phytochemical profiling, cheminformatics, molecular docking and dynamics simulations.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0324990

By:

Nopkuesuk, Napapuch;
Klamrak, Anuwatchakij;
Nabnueangsap, Jaran;
Narkpuk, Jaraspim;
Rahman, Shaikh Shahinur;
Saengkun, Yutthakan;
Janpan, Piyapon;
Soonkum, Thananya;
Sitthiwong, Poramet;
Jangpromma, Nisachon;
Kulchat, Sirinan;
Choowongkomon, Kiattawee;
Patramanon, Rina;
Chaveerach, Arunrat;
Teeravechyan, Samaporn;
Daduang, Jureerut;
Daduang, Sakda

Publication type:

Article

Design, Synthesis and Biological Evaluation of POLRMT Inhibitors for the Treatment of Acute Myeloid Leukemia.

Published in:

Chemical Biology & Drug Design, 2025, v. 105, n. 5, p. 1, doi. 10.1111/cbdd.70127

By:

Liu, Tianli;
Cheng, Xiaoling;
Wang, Yupeng;
Hao, Wenli;
Wang, Hangyu;
Zhang, Ke;
Wang, Jinhui

Publication type:

Article

Sequential structure probing of cotranscriptional RNA folding intermediates.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60425-w

By:

Szyjka, Courtney E.;
Kelly, Skyler L.;
Strobel, Eric J.

Publication type:

Article

T7 RNA polymerase-based gene expression from a transcriptionally silent rDNA spacer in the endosymbiont-harboring trypanosomatid Angomonas deanei.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0322611

By:

Kröninger, Lena;
Maurya, Anay K.;
Stiebeling, Christian;
Stirba, Florian P.;
Kim, Zio;
Nowack, Eva C. M.

Publication type:

Article

NDF/GLYR1 Promotes RNA Polymerase II Processivity via Pol II Binding and Nucleosome Destabilization.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4874, doi. 10.3390/ijms26104874

By:

Li, Ziwei;
Fei, Jia

Publication type:

Article

Exon-intron circular RNAs regulate transcription in the nucleus.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 256, doi. 10.1038/nsmb.2959

By:

Li, Zhaoyong;
Huang, Chuan;
Bao, Chun;
Chen, Liang;
Lin, Mei;
Wang, Xiaolin;
Zhong, Guolin;
Yu, Bin;
Hu, Wanchen;
Dai, Limin;
Zhu, Pengfei;
Chang, Zhaoxia;
Wu, Qingfa;
Zhao, Yi;
Jia, Ya;
Xu, Ping;
Liu, Huijie;
Shan, Ge

Publication type:

Article

Reconstitution of active human core Mediator complex reveals a critical role of the MED14 subunit.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 12, p. 1028, doi. 10.1038/nsmb.2914

By:

Cevher, Murat A;
Shi, Yi;
Li, Dan;
Chait, Brian T;
Malik, Sohail;
Roeder, Robert G

Publication type:

Article

TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 10, p. 876, doi. 10.1038/nsmb.2878

By:

Bunch, Heeyoun;
Zheng, Xiaofeng;
Burkholder, Adam;
Dillon, Simon T;
Motola, Shmulik;
Birrane, Gabriel;
Ebmeier, Christopher C;
Levine, Stuart;
Fargo, David;
Hu, Guang;
Taatjes, Dylan J;
Calderwood, Stuart K

Publication type:

Article

RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 9, p. 794, doi. 10.1038/nsmb.2867

By:

Hein, Pyae P;
Kolb, Kellie E;
Windgassen, Tricia;
Bellecourt, Michael J;
Darst, Seth A;
Mooney, Rachel A;
Landick, Robert

Publication type:

Article

Closed for business: exit-channel coupling to active site conformation in bacterial RNA polymerase.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 9, p. 741, doi. 10.1038/nsmb.2883

By:

Martin, Craig T;
Theis, Karsten

Publication type:

Article

Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 9, p. 810, doi. 10.1038/nsmb.2873

By:

Knutson, Bruce A;
Luo, Jie;
Ranish, Jeffrey;
Hahn, Steven

Publication type:

Article

RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 8, p. 686, doi. 10.1038/nsmb.2853

By:

Ni, Zuyao;
Xu, Chao;
Guo, Xinghua;
Hunter, Gerald O;
Kuznetsova, Olga V;
Tempel, Wolfram;
Marcon, Edyta;
Zhong, Guoqing;
Guo, Hongbo;
Kuo, Wei-Hung William;
Li, Joyce;
Young, Peter;
Olsen, Jonathan B;
Wan, Cuihong;
Loppnau, Peter;
El Bakkouri, Majida;
Senisterra, Guillermo A;
He, Hao;
Huang, Haiming;
Sidhu, Sachdev S

Publication type:

Article

Transcription-generated torsional stress destabilizes nucleosomes.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 88, doi. 10.1038/nsmb.2723

By:

Teves, Sheila S;
Henikoff, Steven

Publication type:

Article

Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 236, doi. 10.1038/nsmb.2776

By:

Sadeghi, Laia;
Siggens, Lee;
Svensson, J Peter;
Ekwall, Karl

Publication type:

Article

Enhancer biology and enhanceropathies.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 210, doi. 10.1038/nsmb.2784

By:

Smith, Edwin;
Shilatifard, Ali

Publication type:

Article

Structural basis for −10 promoter element melting by environmentally induced sigma factors.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 269, doi. 10.1038/nsmb.2777

By:

Campagne, Sébastien;
Marsh, May E;
Capitani, Guido;
Vorholt, Julia A;
Allain, Frédéric H-T

Publication type:

Article

Transcriptional control of a whole chromosome: emerging models for dosage compensation.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 2, p. 118, doi. 10.1038/nsmb.2763

By:

Ferrari, Francesco;
Alekseyenko, Artyom A;
Park, Peter J;
Kuroda, Mitzi I

Publication type:

Article

Good cap/bad cap: how the cap-binding complex determines RNA fate.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 9, doi. 10.1038/nsmb.2751

By:

Müller-McNicoll, Michaela;
Neugebauer, Karla M

Publication type:

Article

CBC-ARS2 stimulates 3′-end maturation of multiple RNA families and favors cap-proximal processing.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1358, doi. 10.1038/nsmb.2720

By:

Hallais, Marie;
Pontvianne, Frédéric;
Andersen, Peter Refsing;
Clerici, Marcello;
Lener, Daniela;
Benbahouche, Nour El Houda;
Gostan, Thierry;
Vandermoere, Franck;
Robert, Marie-Cécile;
Cusack, Stephen;
Verheggen, Céline;
Jensen, Torben Heick;
Bertrand, Edouard

Publication type:

Article

Dictating histone occupancy.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 10, p. 1145, doi. 10.1038/nsmb.2694

By:

Larochelle, Stéphane

Publication type:

Article

How bidirectional becomes unidirectional.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 9, p. 1022, doi. 10.1038/nsmb.2657

By:

Richard, Patricia;
Manley, James L.

Publication type:

Article

Structure of the p300 catalytic core and implications for chromatin targeting and HAT regulation.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 9, p. 1040, doi. 10.1038/nsmb.2642

By:

Delvecchio, Manuela;
Gaucher, Jonathan;
Aguilar-Gurrieri, Carmen;
Ortega, Esther;
Panne, Daniel

Publication type:

Article

A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 7, p. 884, doi. 10.1038/nsmb.2592

By:

Porrua, Odil;
Libri, Domenico

Publication type:

Article

Structural mimicry in transcription regulation of human RNA polymerase II by the DNA helicase RECQL5.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 7, p. 892, doi. 10.1038/nsmb.2596

By:

Kassube, Susanne A;
Jinek, Martin;
Fang, Jie;
Tsutakawa, Susan;
Nogales, Eva

Publication type:

Article

A conserved Mediator-CDK8 kinase module association regulates Mediator-RNA polymerase II interaction.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 5, p. 611, doi. 10.1038/nsmb.2549

By:

Tsai, Kuang-Lei;
Sato, Shigeo;
Tomomori-Sato, Chieri;
Conaway, Ronald C;
Conaway, Joan W;
Asturias, Francisco J

Publication type:

Article

The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 2, p. 174, doi. 10.1038/nsmb.2472

By:

Wang, Feng;
Redding, Sy;
Finkelstein, Ilya J;
Gorman, Jason;
Reichman, David R;
Greene, Eric C

Publication type:

Article

Looking for a promoter in 3D.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 2, p. 141, doi. 10.1038/nsmb.2498

By:

Svetlov, Vladimir;
Nudler, Evgeny

Publication type:

Article

Tudor domain ERI-5 tethers an RNA-dependent RNA polymerase to DCR-1 to potentiate endo-RNAi.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 2, p. 244, doi. 10.1038/nsmb0213-244d

By:

Thivierge, Caroline;
Makil, Neetha;
Flamand, Mathieu;
Vasale, Jessica J;
Mello, Craig C;
Wohlschlegel, James;
Conte, Darryl;
Duchaine, Thomas F

Publication type:

Article

New functions for DNA modifications by TET-JBP.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1061, doi. 10.1038/nsmb.2437

By:

Huang, Yun;
Rao, Anjana

Publication type:

Article

Cyclin-dependent kinase control of the initiation-to-elongation switch of RNA polymerase II.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1108, doi. 10.1038/nsmb.2399

By:

Larochelle, Stéphane;
Amat, Ramon;
Glover-Cutter, Kira;
Sansó, Miriam;
Zhang, Chao;
Allen, Jasmina J;
Shokat, Kevan M;
Bentley, David L;
Fisher, Robert P

Publication type:

Article

Cis-acting noncoding RNAs: friends and foes.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1068, doi. 10.1038/nsmb.2428

By:

Guil, Sònia;
Esteller, Manel

Publication type:

Article

DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1168, doi. 10.1038/nsmb.2400

By:

Hu, QiDong;
Tanasa, Bogdan;
Trabucchi, Michele;
Li, Wenbo;
Zhang, Jie;
Ohgi, Kenneth A;
Rose, David W;
Glass, Christopher K;
Rosenfeld, Michael G

Publication type:

Article

Argonaute proteins couple chromatin silencing to alternative splicing.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 998, doi. 10.1038/nsmb.2373

By:

Ameyar-Zazoua, Maya;
Rachez, Christophe;
Souidi, Mouloud;
Robin, Philippe;
Fritsch, Lauriane;
Young, Robert;
Morozova, Nadya;
Fenouil, Romain;
Descostes, Nicolas;
Andrau, Jean-Christophe;
Mathieu, Jacques;
Hamiche, Ali;
Ait-Si-Ali, Slimane;
Muchardt, Christian;
Batsché, Eric;
Harel-Bellan, Annick

Publication type:

Article

Chromatin 'resetting' during transcription elongation: a central role for methylated H3K36.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 9, p. 863, doi. 10.1038/nsmb.2370

By:

Butler, Jill S;
Dent, Sharon Y R

Publication type:

Article

Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 788, doi. 10.1038/nsmb.2334

By:

Grünberg, Sebastian;
Warfield, Linda;
Hahn, Steven

Publication type:

Article

PICking apart Pol II initiation.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 737, doi. 10.1038/nsmb.2349

By:

Carey, Michael

Publication type:

Article

Expanding the CTD code.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 743, doi. 10.1038/nsmb.2363

By:

Heinrichs, Arianne

Publication type:

Article

5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 831, doi. 10.1038/nsmb.2346

By:

Kellinger, Matthew W;
Song, Chun-Xiao;
Chong, Jenny;
Lu, Xing-Yu;
He, Chuan;
Wang, Dong

Publication type:

Article

Twist in the RNAPII tail.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 3, p. 267, doi. 10.1038/nsmb.2263

By:

Heinrichs, Arianne

Publication type:

Article

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 3, p. 276, doi. 10.1038/nsmb.2224

By:

Pankotai, Tibor;
Bonhomme, Céline;
Chen, David;
Soutoglou, Evi

Publication type:

Article

The Elongator subcomplex Elp456 is a hexameric RecA-like ATPase.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 3, p. 314, doi. 10.1038/nsmb.2234

By:

Glatt, Sebastian;
Létoquart, Juliette;
Faux, Céline;
Taylor, Nicholas M I;
Séraphin, Bertrand;
Müller, Christoph W

Publication type:

Article

Molecular basis for RNA polymerization by Q? replicase.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 2, p. 229, doi. 10.1038/nsmb.2204

By:

Takeshita, Daijiro;
Tomita, Kozo

Publication type:

Article

Tudor domain ERI-5 tethers an RNA-dependent RNA polymerase to DCR-1 to potentiate endo-RNAi.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 1, p. 90, doi. 10.1038/nsmb.2186

By:

Thivierge, Caroline;
Makil, Neetha;
Flamand, Mathieu;
Vasale, Jessica J;
Mello, Craig C;
Wohlschlegel, James;
Conte, Darryl;
Duchaine, Thomas F

Publication type:

Article

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 12, p. 1394, doi. 10.1038/nsmb.2164

By:

Bintu, Lacramioara;
Kopaczynska, Marta;
Hodges, Courtney;
Lubkowska, Lucyna;
Kashlev, Mikhail;
Bustamante, Carlos

Publication type:

Article

The structural basis of RNA-catalyzed RNA polymerization.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 1036, doi. 10.1038/nsmb.2107

By:

Shechner, David M.;
Bartel, David P.

Publication type:

Article

Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3? end of human genes.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 10, p. 1115, doi. 10.1038/nsmb.2124

By:

Martins, Sandra Bento;
Rino, José;
Carvalho, Teresa;
Carvalho, Célia;
Yoshida, Minoru;
Klose, Jasmim Mona;
de Almeida, Sérgio Fernandes;
Carmo-Fonseca, Maria

Publication type:

Article

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 1075, doi. 10.1038/nsmb.2091

By:

Valen, Eivind;
Preker, Pascal;
Andersen, Peter Refsing;
Xiaobei Zhao;
Yun Chen;
Ender, Christine;
Dueck, Anne;
Meister, Gunter;
Sandelin, Albin;
Jensen, Torben Heick

Publication type:

Article