Works matching DE "RNA folding"
Results: 71
The Paradox of Dual Roles in the RNA World: Resolving the Conflict Between Stable Folding and Templating Ability.
- Published in:
- 2013
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- Publication type:
- Letter
Modeling key pathological features of frontotemporal dementia with C9ORF72 repeat expansion in iPSC-derived human neurons.
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- Acta Neuropathologica, 2013, v. 126, n. 3, p. 385, doi. 10.1007/s00401-013-1149-y
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- Publication type:
- Article
The structure of the box C/D enzyme reveals regulation of RNA methylation.
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- Nature, 2013, v. 502, n. 7472, p. 519, doi. 10.1038/nature12581
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- Publication type:
- Article
rClone Red facilitates bacterial gene expression research by undergraduates in the teaching laboratory.
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- Synthetic Biology (23977000), 2018, v. 3, n. 1, p. 1, doi. 10.1093/synbio/ysy013
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- Publication type:
- Article
Dual Graph Partitioning Highlights a Small Group of Pseudoknot-Containing RNA Submotifs.
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- Genes, 2018, v. 9, n. 8, p. 371, doi. 10.3390/genes9080371
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- Publication type:
- Article
Predicting Model and Algorithm in RNA Folding Structure Including Pseudoknots.
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- International Journal of Pattern Recognition & Artificial Intelligence, 2018, v. 32, n. 10, p. N.PAG, doi. 10.1142/S0218001418510059
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- Publication type:
- Article
GTfold: Enabling parallel RNA secondary structure prediction on multi-core desktops.
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- BMC Research Notes, 2012, v. 5, n. 1, p. 1, doi. 10.1186/1756-0500-5-341
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- Publication type:
- Article
Characteristics of equipartition for RNA structure.
- Published in:
- 2014
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- Publication type:
- Conference Paper/Materials
Unzippers, Resolvers and Sensors: A Structural and Functional Biochemistry Tale of RNA Helicases.
- Published in:
- International Journal of Molecular Sciences, 2015, v. 16, n. 2, p. 2269, doi. 10.3390/ijms16022269
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- Publication type:
- Article
RNAiFOLD: A CONSTRAINT PROGRAMMING ALGORITHM FOR RNA INVERSE FOLDING AND MOLECULAR DESIGN.
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- Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1142/S0219720013500017
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- Publication type:
- Article
PRACTICALITY AND TIME COMPLEXITY OF A SPARSIFIED RNA FOLDING ALGORITHM.
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- Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 2, p. 1241007-1, doi. 10.1142/S0219720012410077
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- Publication type:
- Article
Role of a Conserved J8/7 X P4 Base-Triple in the Tetrahymena Ribozyme1.
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- Journal of Biochemistry, 2002, v. 132, n. 5, p. 713, doi. 10.1093/oxfordjournals.jbchem.a003278
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- Publication type:
- Article
Pseudoknots in RNA folding landscapes.
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- Bioinformatics, 2016, v. 32, n. 2, p. 187, doi. 10.1093/bioinformatics/btv572
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- Publication type:
- Article
The RNA shapes studio.
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- Bioinformatics, 2015, v. 31, n. 3, p. 423, doi. 10.1093/bioinformatics/btu649
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- Publication type:
- Article
Basin Hopping Graph: a computational framework to characterize RNA folding landscapes.
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- Bioinformatics, 2014, v. 30, n. 14, p. 2009
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- Publication type:
- Article
eSBMTools 1.0: enhanced native structure-based modeling tools.
- Published in:
- Bioinformatics, 2013, v. 29, n. 21, p. 2795, doi. 10.1093/bioinformatics/btt478
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- Publication type:
- Article
Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information.
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- Bioinformatics, 2013, v. 29, n. 6, p. 704, doi. 10.1093/bioinformatics/btt050
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- Publication type:
- Article
Folding RNA/DNA hybrid duplexes.
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- Bioinformatics, 2012, v. 28, n. 19, p. 2530, doi. 10.1093/bioinformatics/bts466
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- Publication type:
- Article
Approximating the set of local minima in partial RNA folding landscapes.
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- Bioinformatics, 2012, v. 28, n. 4, p. 523, doi. 10.1093/bioinformatics/btr715
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- Publication type:
- Article
抑制RANKL诱导破骨细胞分化的DNA适配子的筛选.
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- Progress in Modern Biomedicine, 2017, v. 17, n. 17, p. 3220, doi. 10.13241/j.cnki.pmb.2017.17.005
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- Publication type:
- Article
Nanopore electric snapshots of an RNA tertiary folding pathway.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01588-z
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- Publication type:
- Article
Formation of RNA spatial structures.
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- Molecular Biology, 2012, v. 46, n. 1, p. 34, doi. 10.1134/S0026893312010104
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- Publication type:
- Article
A U⋅U Pair-to-U⋅C Pair Mutation-Induced RNA Native Structure Destabilisation and Stretching-Force-Induced RNA Misfolding.
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- ChemPlusChem, 2015, v. 80, n. 8, p. 1267, doi. 10.1002/cplu.201500144
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- Publication type:
- Article
Simulating the origins of life: The dual role of RNA replicases as an obstacle to evolution.
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- PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180827
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- Publication type:
- Article
Tiling Nussinov's RNA folding loop nest with a space-time approach.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2785-6
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- Publication type:
- Article
PSRna: Prediction of small RNA secondary structures based on reverse complementary folding method.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 4, p. -1, doi. 10.1142/S0219720016430010
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- Publication type:
- Article
INTERACTIONS BETWEEN EVOLUTIONARY PROCESSES AT HIGH MUTATION RATES.
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- Evolution, 2012, v. 66, n. 7, p. 2303, doi. 10.1111/j.1558-5646.2012.01596.x
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- Publication type:
- Article
RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.
- Published in:
- PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0194583
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- Publication type:
- Article
Folding of 16S rRNA in a Signal-Producing Structure for the Detection of Bacteria.
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- Angewandte Chemie International Edition, 2013, v. 52, n. 40, p. 10586, doi. 10.1002/anie.201303919
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- Publication type:
- Article
Probing the kinetic and thermodynamic consequences of the tetraloop/tetraloop receptor monovalent ion-binding site in P4-P6 RNA by smFRET.
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- Biochemical Society Transactions, 2015, v. 43, n. 2, p. 172, doi. 10.1042/BST20140268
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- Publication type:
- Article
An RNA folding motif: GNRA tetraloop–receptor interactions.
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- Quarterly Reviews of Biophysics, 2013, v. 46, n. 3, p. 223, doi. 10.1017/S0033583513000048
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- Publication type:
- Article
Rendering RNA in 3D.
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- Nature Methods, 2012, v. 9, n. 6, p. 552, doi. 10.1038/nmeth.2045
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- Publication type:
- Article
Analysis of the use of codon pairs in the HE gene of the ISA virus shows a correlation between bias in HPR codon-pair use and mortality rates caused by the virus.
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- Virology Journal, 2013, v. 10, n. 1, p. 1, doi. 10.1186/1743-422X-10-180
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- Publication type:
- Article
An improved Four-Russians method and sparsified Four-Russians algorithm for RNA folding.
- Published in:
- Algorithms for Molecular Biology, 2016, p. 1, doi. 10.1186/s13015-016-0081-9
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- Publication type:
- Article
Sparse RNA folding revisited: space-efficient minimum free energy structure prediction.
- Published in:
- Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0071-y
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- Publication type:
- Article
RNA folding with hard and soft constraints.
- Published in:
- Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0070-z
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- Publication type:
- Article
Faster algorithms for RNA-folding using the Four-Russians method.
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- Algorithms for Molecular Biology, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1748-7188-9-5
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- Publication type:
- Article
Efficient edit distance with duplications and contractions.
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- Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-27
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- Publication type:
- Article
Asymptotic structural properties of quasi-random saturated structures of RNA.
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- Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-24
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- Publication type:
- Article
Efficient procedures for the numerical simulation of mid-size RNA kinetics.
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- Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 24, doi. 10.1186/1748-7188-7-24
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- Publication type:
- Article
Tuning iteration space slicing based tiled multi-core code implementing Nussinov's RNA folding.
- Published in:
- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2008-6
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- Publication type:
- Article
Cache and energy efficient algorithms for Nussinov's RNA Folding.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1917-0
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- Publication type:
- Article
Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1707-8
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- Publication type:
- Article
Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus.
- Published in:
- PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148281
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- Publication type:
- Article
GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies.
- Published in:
- PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136444
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- Publication type:
- Article
An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding.
- Published in:
- PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0134262
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- Publication type:
- Article
On the Normalization of the Minimum Free Energy of RNAs by Sequence Length.
- Published in:
- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0113380
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- Publication type:
- Article
Viral RNAs Are Unusually Compact.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0105875
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- Publication type:
- Article
Helix Capping in RNA Structure.
- Published in:
- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093664
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- Publication type:
- Article
Predicting Helical Topologies in RNA Junctions as Tree Graphs.
- Published in:
- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071947
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- Publication type:
- Article