Works matching DE "RNA analysis"

Results: 4102

Comparative analysis of RNA expression identifies effective targeted drug in myoepithelial carcinoma.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-00852-6

By:

Vasquez, Yvonne A.;
Sanders, Lauren;
Beale, Holly C.;
Lyle, A. Geoffrey;
Kephart, Ellen T.;
Learned, Katrina;
Peralez, Jennifer;
Li, Amy;
Huang, Min;
Pyke-Grimm, Kimberly A.;
Tan, Serena Y.;
Salama, Sofie R.;
Haussler, David;
Bjork, Isabel;
Vaske, Olena M.;
Spunt, Sheri L.

Publication type:

Article

Leveraging basecaller's move table to generate a lightweight k-mer model for nanopore sequencing analysis Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf111

By:

Samarakoon, Hiruna;
Wan, Yuk Kei;
Parameswaran, Sri;
Göke, Jonathan;
Gamaarachchi, Hasindu;
Deveson, Ira W

Publication type:

Article

Harnessing Institutionally Developed Clinical Targeted Sequencing to Improve Patient Survival in Breast Cancer: A Seven-Year Experience.

Published in:

Cancer Research & Treatment, 2025, v. 57, n. 2, p. 443, doi. 10.4143/crt.2024.296

By:

Koh, Jiwon;
Kim, Jinyong;
Woo, Go-Un;
Yi, Hanbaek;
Kwon, So Yean;
Seo, Jeongmin;
Bae, Jeong Mo;
Kim, Jung Ho;
Won, Jae Kyung;
Ryu, Han Suk;
Jeon, Yoon Kyung;
Lee, Dae-Won;
Kim, Miso;
Kim, Tae-Yong;
Lee, Kyung-Hun;
Kim, Tae-You;
Lee, Jee-Soo;
Seong, Moon-Woo;
Kim, Sheehyun;
Lee, Sungyoung

Publication type:

Article

Comprehensive Single‐Cell RNA Sequencing Analysis of Cervical Cancer: Insights Into Tumor Microenvironment and Gene Expression Dynamics.

Published in:

International Journal of Genomics, 2025, v. 2025, p. 1, doi. 10.1155/ijog/5027347

By:

Shen, Xiaoting;
Sun, Huier;
Zhang, Shanshan;
Zhao, Songyun

Publication type:

Article

Crosstalk Among Gut Microbiota, Fecal Metabolites, and Amygdala Neuropathology Genes After Ginger Polyphenol Administration in Female Rats with Neuropathic Pain: Evidence for Microbiota–Gut–Brain Connection.

Published in:

Nutrients, 2025, v. 17, n. 9, p. 1444, doi. 10.3390/nu17091444

By:

Shen, Chwan-Li;
Santos, Julianna Maria;
Elmassry, Moamen M.;
Chen, Fang;
Ji, Guangchen;
Presto, Peyton;
Kiritoshi, Takaki;
Liu, Xiaobo;
Neugebauer, Volker

Publication type:

Article

RNA analysis of the longest living vertebrate Greenland shark revealed an abundance of LINE-like elements in its transcriptome.

Published in:

Czech Polar Reports, 2023, v. 13, n. 2, p. 210, doi. 10.5817/CPR2023-2-17

By:

Bartas, Martin;
Červeň, Jiří;
Valková, Natália;
Volná, Adriana;
Dobrovolná, Michaela;
Šislerová, Lucie;
Baldvinsson, Hörður;
Pečinka, Petr;
Brázda, Václav

Publication type:

Article

Heparinase I treatment to overcome RNA quantification interference in heparinized liver donor samples: One size fits all?

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0322899

By:

Dalmau, Mar;
Charco, Ramón;
Bilbao, Itxarone;
Dopazo, Cristina;
Caralt, Mireia;
Molino, José Andrés;
Gómez-Gavara, Concepción

Publication type:

Article

MiR-371b-5p reduces osteosarcoma cell migration and proliferation to induce apoptosis by targeting FUT4.

Published in:

Journal of Cancer, 2025, v. 16, n. 7, p. 2388, doi. 10.7150/jca.103286

By:

Qiang Xue;
Ruicong Ma;
YueYuan Chen;
Xiaodi Yan;
Jiajia Liu;
Jianhua Xue;
Yang Yang;
Xianchen Liu

Publication type:

Article

Long Noncoding RNA SNHG12 Regulates Ischemia/reperfusion (I/R)-mediated Acute Kidney Injury (AKI) Through miR-129–1-3p/Ubiquitin Specific Peptidase 25 axis.

Published in:

Applied Biochemistry & Biotechnology, 2025, v. 197, n. 5, p. 2958, doi. 10.1007/s12010-024-05148-2

By:

Huang, Peng;
Meng, Lingzhang;
Pang, Jun;
Huang, Haiting;
Ma, Jing;
He, Linlin;
Lin, Xu

Publication type:

Article

Commentary on "Whole Exome Sequencing Reveals Candidate Variants in Ion Channel Genes for Pelvic Muscle Dysfunction in Young Females with a Family History".

Published in:

International Urogynecology Journal, 2025, v. 36, n. 4, p. 935, doi. 10.1007/s00192-025-06089-y

By:

Allen-Brady, Kristina

Publication type:

Article

The interictal transcriptomic map of migraine without aura.

Published in:

Journal of Headache & Pain, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s10194-025-02033-z

By:

Petschner, Peter;
Kumar, Sahel;
Nguyen, Duc A.;
Torok, Dora;
Gal, Zsofia;
Baksa, Daniel;
Gecse, Kinga;
Kokonyei, Gyongyi;
Mamitsuka, Hiroshi;
Juhasz, Gabriella

Publication type:

Article

High‐Throughput Sequencing Detects a Viral Complex in Agave Tequilana Plants.

Published in:

Advances in Virology, 2025, v. 2025, p. 1, doi. 10.1155/av/6434701

By:

Torre-Almaraz, Rodolfo De La;
Salgado-Ortiz, Héctor;
Salazar-Segura, Mario;
Jangra, Sumit

Publication type:

Article

Prevalence of human papillomaviruses in lung carcinomas: a study of 218 cases.

Published in:

2005

By:

Coissard, Cyrille J.;
Besson, Guillaume;
Polette, Myriam C.;
Monteau, Michel;
Birembaut, Philippe L.;
Clavel, Christine E.

Publication type:

journal article

TaqMan RT-PCR assay coupled with capillary electrophoresis for quantification and identification of bcr-abl transcript type.

Published in:

2004

By:

Luthra, Rajyalakshmi;
Sanchez-Vega, Beatriz;
Medeiros, L. Jeffrey

Publication type:

journal article

Microbiome and metabolome reveal the metabolic and microbial variations induced by depression and constipation.

Published in:

Psychogeriatrics, 2023, v. 23, n. 2, p. 319, doi. 10.1111/psyg.12934

By:

Liu, Xiaojie;
Zhao, Ziyu;
Fan, Yuhui;
Zhao, Di;
Wang, Yaze;
Lv, Meng;
Qin, Xuemei

Publication type:

Article

Advances in RNA Labeling with Trifluoromethyl Groups.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 60, p. 1, doi. 10.1002/chem.202302220

By:

Eichler, Clemens;
Himmelstoß, Maximilian;
Plangger, Raphael;
Weber, Leonie I.;
Hartl, Markus;
Kreutz, Christoph;
Micura, Ronald

Publication type:

Article

MicroRNA-127-3p regulates myoblast proliferation by targeting Sept7.

Published in:

Biotechnology Letters, 2020, v. 42, n. 9, p. 1633, doi. 10.1007/s10529-020-02906-0

By:

Li, Jie;
Wang, Gaofu;
Jiang, Jing;
Zhang, Li;
Zhou, Peng;
Ren, Hangxing

Publication type:

Article

TP53INP1 3′-UTR functions as a ceRNA in repressing the metastasis of glioma cells by regulating miRNA activity.

Published in:

Biotechnology Letters, 2016, v. 38, n. 10, p. 1699, doi. 10.1007/s10529-016-2159-3

By:

Wang, Yi;
Lin, Guihua

Publication type:

Article

Plate in situ hybridization (PISH) as a time and cost effective RNA expression assay to study phenotypic heterogeneity in a population of cultured murine cells at single cell resolution.

Published in:

Biotechnology Letters, 2015, v. 37, n. 8, p. 1573, doi. 10.1007/s10529-015-1833-1

By:

Kraus, Petra;
Kocsis, Victoria;
Williams, Colette;
Youngs, Brittany;
Lufkin, Thomas

Publication type:

Article

Size-dependent growth of Microcystis colonies in a shallow, hypertrophic lake: use of the RNA-to-total organic carbon ratio.

Published in:

Aquatic Ecology, 2014, v. 48, n. 2, p. 207, doi. 10.1007/s10452-014-9476-1

By:

Li, Ming;
Zhu, Wei;
Dai, Xiaoxuan;
Xiao, Man;
Appiah-Sefah, Gloria;
Nkrumah, Philip

Publication type:

Article

Correction to: The P/N (Positive-to-Negative Links) Ratio in Complex Networks—A Promising In Silico Biomarker for Detecting Changes Occurring in the Human Microbiome.

Published in:

2018

By:

Ma, Zhanshan (Sam)

Publication type:

Correction Notice

A More Comprehensive Community of Ammonia-Oxidizing Archaea (AOA) Revealed by Genomic DNA and RNA Analyses of amoA Gene in Subtropical Acidic Forest Soils.

Published in:

Microbial Ecology, 2017, v. 74, n. 4, p. 910, doi. 10.1007/s00248-017-1045-4

By:

Wang, Yong-Feng;
Wu, Ruo-Nan;
Meng, Han;
Gu, Ji-Dong;
Lan, Wensheng

Publication type:

Article

Temporal Changes Rather than Long-Term Repeated Burning Predominately Control the Shift in the Abundance of Soil Denitrifying Community in an Australian Sclerophyll Forest.

Published in:

Microbial Ecology, 2017, v. 73, n. 1, p. 177, doi. 10.1007/s00248-016-0894-6

By:

Liu, Xian;
Chen, C.;
Hughes, J.;
Wang, W.;
Lewis, Tom

Publication type:

Article

Expression of artemin and GFRα3 in an animal model of migraine: possible role in the pathogenesis of this disorder.

Published in:

Journal of Headache & Pain, 2016, v. 17, n. 1, p. 1, doi. 10.1186/s10194-016-0673-2

By:

Shang, Hai-Qiong;
Wang, Yan;
Mao, Yan-Yan;
Kong, Li-Gang;
Sun, Gao-Ying;
Xu, Lei;
Zhang, Dao-Gong;
Han, Yue-Chen;
Li, Jian-Feng;
Wang, Hai-Bo;
Fan, Zhao-Min

Publication type:

Article

Low-expressed testis-specific calcium-binding protein CBP86-IV (CABYR) is observed in idiopathic asthenozoospermia.

Published in:

World Journal of Urology, 2015, v. 33, n. 5, p. 633, doi. 10.1007/s00345-015-1516-5

By:

Shen, Shulin;
Wang, Jinzi;
Liang, Jihong;
Zhu, Chunhui

Publication type:

Article

DNA methylation and small interference RNAs participate in the regulation of MADS-box genes involved in dormancy in sweet cherry (Prunus avium L.).

Published in:

Tree Physiology, 2017, v. 37, n. 12, p. 1739, doi. 10.1093/treephys/tpx055

By:

Rothkegel, Karin;
Sánchez, Evelyn;
Montes, Christian;
Greve, Macarena;
Tapia, Sebastián;
Bravo, Soraya;
Prieto, Humberto;
Almeida, Andréa Miyasaka

Publication type:

Article

NRP1 knockdown inhibits the invasion and migration of rhabdoid tumor of the kidney cells.

Published in:

Pediatric Surgery International, 2024, v. 40, n. 1, p. 1, doi. 10.1007/s00383-024-05808-8

By:

Yamaoka, Bin;
Nagasaki-Maeoka, Eri;
Uekusa, Shota;
Muto-Fujita, Eri;
Abe, Naoko;
Fujiwara, Kyoko;
Koshinaga, Tsugumichi;
Uehara, Shuichiro

Publication type:

Article

Adolescent high fat diet alters the transcriptional response of microglia in the prefrontal cortex in response to stressors in both male and female mice.

Published in:

Stress: The International Journal on the Biology of Stress, 2024, v. 27, n. 1, p. 1, doi. 10.1080/10253890.2024.2365864

By:

Davis, Alyshia B.;
Lloyd, Kelsey R.;
Bollinger, Justin L.;
Wohleb, Eric S.;
Reyes, Teresa M.

Publication type:

Article

Adaphostin cytoxicity in glioblastoma cells is ROS-dependent and is accompanied by upregulation of heme oxygenase-1.

Published in:

2007

By:

Long, Jason;
Manchandia, Tejas;
Ban, Kechen;
Gao, Shan;
Miller, Claudia;
Chandra, Joya

Publication type:

journal article

Irinotecan changes gene expression in the small intestine of the rat with breast cancer.

Published in:

2007

By:

Bowen, Joanne M;
Gibson, Rachel J;
Cummins, Adrian G;
Tyskin, Anna;
Keefe, Dorothy M K

Publication type:

journal article

Lack of strain-related differences in drug metabolism and efflux transporter characteristics between CD-1 and athymic nude mice.

Published in:

2005

By:

Martignoni, Marcella;
de Kanter, Ruben;
Moscone, Anna;
Grossi, Pietro;
Monshouwer, Mario

Publication type:

journal article

Use of reverse transcription-polymerase chain reaction to detect embryonic interleukin-1 system messenger RNA in individual preimplantation mouse embryos co-cultured with Vero cells.

Published in:

1997

By:

Huang, H Y;
Krüssel, J S;
Wen, Y;
Polan, M L

Publication type:

journal article

Macrophage and granulosa interleukin-1 beta mRNA in human ovulatory follicles.

Published in:

1995

By:

Machelon, V;
Nome, F;
Durand-Gasselin, I;
Emilie, D

Publication type:

journal article

اثرات محافظ قلبی نانو-نیوزومهای بارگیری شده با سیمواستاتین بر کاردیومیوسیتها در ایسکمی قلبی.

Published in:

Medical Journal of Tabriz University of Medical Sciences, 2023, v. 45, n. 3, p. 211, doi. 10.34172/mj.2023.026

By:

ناهید ابوطالب;
مهدیه مهراب محسن;
مریم ناصراالسال&

Publication type:

Article

اثر عصاره جلبک دونالیلا بر روی بیان ژن آنتی آپوپتوتیک 2رده سرطانی Bcl-Hela.

Published in:

Medical Journal of Tabriz University of Medical Sciences, 2021, v. 43, n. 2, p. 186

By:

مهدیه السادات لا;
مهسا کاوسی

Publication type:

Article

The role of proteoglycan form of DMP1 in cranial repair.

Published in:

BMC Molecular & Cell Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12860-022-00443-4

By:

Liu, Yang;
Niu, Pingping;
Zhou, Mengqi;
Xue, Hui

Publication type:

Article

Overexpression of glutamate‐gated chloride channel in the integument is mainly responsible for emamectin benzoate resistance in the western flower thrips Frankliniella occidentalis.

Published in:

Pest Management Science, 2022, v. 78, n. 10, p. 4140, doi. 10.1002/ps.7032

By:

Gao, Yue;
Yoon, Kyungjae Andrew;
Lee, Jong Hyeok;
Kim, Ju Hyeon;
Lee, Si Hyeock

Publication type:

Article

Comprehensive RNA analysis of CSF reveals a role for CEACAM6 in lung cancer leptomeningeal metastases.

Published in:

NPJ Precision Oncology, 2021, v. 5, n. 1, p. 1, doi. 10.1038/s41698-021-00228-6

By:

Li, Yingmei;
Polyak, Dina;
Lamsam, Layton;
Connolly, Ian David;
Johnson, Eli;
Khoeur, Lina Khav;
Andersen, Stephanie;
Granucci, Monica;
Stanley, Geoff;
Liu, Boxiang;
Nagpal, Seema;
Hayden Gephart, Melanie

Publication type:

Article

Deconvolution of conformational exchange from Raman spectra of aqueous RNA nucleosides.

Published in:

Communications Chemistry, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42004-020-0298-x

By:

Wilson, Alex L.;
Outeiral, Carlos;
Dowd, Sarah E.;
Doig, Andrew J.;
Popelier, Paul L. A.;
Waltho, Jonathan P.;
Almond, Andrew

Publication type:

Article

FOXP2 down expression is associated with executive dysfunctions and electrophysiological abnormalities of brain in Autism spectrum disorder; a neuroimaging genetic study.

Published in:

Autism & Developmental Language Impairments, 2022, v. 7, p. 1, doi. 10.1177/23969415221126391

By:

Haghighatfard, Arvin;
Yaghoubi asl, Elham;
Bahadori, Rosita Azar;
Aliabadian, Rojina;
Farhadi, Mahdi;
Mohammadpour, Fatemeh;
Tabrizi, Zeinab

Publication type:

Article

Combinatorial Analysis of miRNAs and tRNA Fragments as Potential Biomarkers for Cancer Patients in Liquid Biopsies.

Published in:

Non-Coding RNA, 2025, v. 11, n. 1, p. 17, doi. 10.3390/ncrna11010017

By:

Glogovitis, Ilias;
D'Ambrosi, Silvia;
Antunes-Ferreira, Mafalda;
Chiogna, Monica;
Yahubyan, Galina;
Baev, Vesselin;
Wurdinger, Thomas;
Koppers-Lalic, Danijela

Publication type:

Article

sRNAflow: A Tool for the Analysis of Small RNA-Seq Data.

Published in:

Non-Coding RNA, 2024, v. 10, n. 1, p. 6, doi. 10.3390/ncrna10010006

By:

Zayakin, Pawel

Publication type:

Article

DANSR : A Tool for the Detection of Annotated and Novel Small RNAs.

Published in:

Non-Coding RNA, 2022, v. 8, n. 1, p. 9, doi. 10.3390/ncrna8010009

By:

Zhang, Jin;
Eteleeb, Abdallah M.;
Rozycki, Emily B.;
Inkman, Matthew J.;
Ly, Amy;
Scharf, Russell E.;
Jayachandran, Kay;
Krasnick, Bradley A.;
Mazur, Thomas;
White, Nicole M.;
Fields, Ryan C.;
Maher, Christopher A.

Publication type:

Article

Composition of Caenorhabditis elegans extracellular vesicles suggests roles in metabolism, immunity, and aging.

Published in:

GeroScience, 2020, v. 42, n. 4, p. 1133, doi. 10.1007/s11357-020-00204-1

By:

Russell, Joshua C.;
Kim, Taek-Kyun;
Noori, Ayush;
Merrihew, Gennifer E.;
Robbins, Julia E.;
Golubeva, Alexandra;
Wang, Kai;
MacCoss, Michael J.;
Kaeberlein, Matt

Publication type:

Article

Sponging of five tumour suppressor miRNAs by lncRNA-KCNQ1OT1 activates BMPR1A/BMPR1B-ACVR2A/ACVR2B signalling and promotes chemoresistance in hepatocellular carcinoma.

Published in:

Cell Death Discovery, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41420-024-02016-0

By:

Majumdar, Swagata;
Chakraborty, Anannya;
Das, Sumit;
Gorain, Mahadeo;
Chatterjee, Soumyabrata;
Dey, Indrashish;
Bhowmik, Sayantani;
Ghosh, Suchandrima;
Banerjee, Sanjana;
Ahammed, Sk. Mahiuddin;
Chowdhury, Abhijit;
Datta, Simanti;
Kundu, Gopal;
Banerjee, Soma

Publication type:

Article

Tgf-beta1, Tgf-beta2, Tgf-beta3 and Msx2 expression is elevated during frontonasal suture morphogenesis and during active postnatal facial growth.

Published in:

2002

By:

Adab, K;
Sayne, J R;
Carlson, D S;
Opperman, L A

Publication type:

journal article

Proteopedia entry: Bovine pancreatic ribonuclease a.

Published in:

Biochemistry & Molecular Biology Education, 2012, v. 40, n. 1, p. 75, doi. 10.1002/bmb.20568

By:

Jeremy Johnson, R.;
Andorfer, Mary;
Chaffee, Ashton;
Clark, Melanie;
Clarke, Nathan;
Douglass, Grace;
Ellis, Elizabeth;
Fischer, Emily;
Fuller, Carissa;
Garnett, Lauren;
Gehring, Lexi;
Heckman, Laurel;
Kroupa, Daniel;
Liu, Lin;
Proimos, Deanna;
Raebel, Micah;
Shaw, Kristyn;
Slack, Michael;
Trautmann, Diana;
Trefilek, Ben

Publication type:

Article

Identification of a flavonoid 7-O-glucosyltransferase from Andrographis paniculata.

Published in:

Journal of Asian Natural Products Research, 2020, v. 22, n. 3, p. 279, doi. 10.1080/10286020.2019.1680644

By:

Li, Yuan;
Gao, Wei;
Huang, Lu-Qi

Publication type:

Article

Ferulic acid induces proliferation and differentiation of rat osteoblasts in vitro through cGMP/PKGII/ENaC signaling.

Published in:

Journal of Asian Natural Products Research, 2017, v. 19, n. 2, p. 176, doi. 10.1080/10286020.2016.1268127

By:

Gao, Jian-Lin;
Chen, Jun;
Yang, Guo-Zhu;
Lu, Li;
Lu, Xing-Yan;
Jia, Huan-Huan;
Jin, Xiao-Dong;
Zhang, Hao;
Li, Qing-Nan

Publication type:

Article

The antiviral effect of 7-hydroxyisoflavone against Enterovirus 71 in vitro.

Published in:

Journal of Asian Natural Products Research, 2013, v. 15, n. 4, p. 382, doi. 10.1080/10286020.2013.770737

By:

Wang, Hui-Qiang;
Meng, Shuai;
Li, Zhuo-Rong;
Peng, Zong-Gen;
Han, Yan-Xing;
Guo, Shan-Shan;
Cui, Xiao-Lan;
Li, Yu-Huan;
Jiang, Jian-Dong

Publication type:

Article