Works about RIBOSWITCHES

Results: 237

Bacterial genetics: Metalloregulatory riboswitches.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 5, p. 249, doi. 10.1038/nrmicro3478

By:

Du Toit, Andrea

Publication type:

Article

Bacterial physiology: Riboswitch control is key to ZTP mystery.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 3, p. 127, doi. 10.1038/nrmicro3441

By:

Kåhrström, Christina Tobin

Publication type:

Article

Bacterial transcription: Turning the switch on gene expression.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 10, p. 657, doi. 10.1038/nrmicro3356

By:

Du Toit, Andrea

Publication type:

Article

Bacterial physiology: Dual-action riboswitch.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 1, p. 5, doi. 10.1038/nrmicro2945

By:

Jermy, Andrew

Publication type:

Article

Bacterial transcription: Rho gets to grips with the riboswitch.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 5, p. 313, doi. 10.1038/nrmicro2791

By:

Kåhrström, Christina Tobin

Publication type:

Article

Exploring l-isoleucine riboswitches for enhancing 4-hydroxyisoleucine production in Corynebacterium glutamicum.

Published in:

Biotechnology Letters, 2023, v. 45, n. 9, p. 1169, doi. 10.1007/s10529-023-03407-6

By:

Xiang, Youhe;
Chen, Rui;
Shi, Feng;
Lai, Wenmei

Publication type:

Article

Theophylline-inducible riboswitch accurately regulates protein expression at low level in Escherichia coli.

Published in:

Biotechnology Letters, 2019, v. 41, n. 6/7, p. 743, doi. 10.1007/s10529-019-02672-8

By:

Kamiura, Rikuto;
Toya, Yoshihiro;
Matsuda, Fumio;
Shimizu, Hiroshi

Publication type:

Article

Enhancing the vitamin B12 production and growth of Propionibacterium freudenreichii in tofu wastewater via a light-induced vitamin B12 riboswitch.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 24, p. 10481, doi. 10.1007/s00253-015-6958-6

By:

Yu, Yue;
Zhu, Xuan;
Shen, Yubiao;
Yao, Huanghong;
Wang, Peiheng;
Ye, Kun;
Wang, Xiaofeng;
Gu, Qing

Publication type:

Article

Small RNA regulators in bacteria: powerful tools for metabolic engineering and synthetic biology.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 8, p. 3413, doi. 10.1007/s00253-014-5569-y

By:

Kang, Zhen;
Zhang, Chuanzhi;
Zhang, Junli;
Jin, Peng;
Zhang, Juan;
Du, Guocheng;
Chen, Jian

Publication type:

Article

Insights into the cotranscriptional and translational control mechanisms of the Escherichia coli tbpA thiamin pyrophosphate riboswitch.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07008-5

By:

Grondin, Jonathan P.;
Geffroy, Mélanie;
Simoneau-Roy, Maxime;
Chauvier, Adrien;
Turcotte, Pierre;
St-Pierre, Patrick;
Dubé, Audrey;
Moreau, Julie;
Massé, Eric;
Penedo, J. Carlos;
Lafontaine, Daniel A.

Publication type:

Article

Insights into the cotranscriptional and translational control mechanisms of the Escherichia coli tbpA thiamin pyrophosphate riboswitch.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07008-5

By:

Grondin, Jonathan P.;
Geffroy, Mélanie;
Simoneau-Roy, Maxime;
Chauvier, Adrien;
Turcotte, Pierre;
St-Pierre, Patrick;
Dubé, Audrey;
Moreau, Julie;
Massé, Eric;
Penedo, J. Carlos;
Lafontaine, Daniel A.

Publication type:

Article

Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120.

Published in:

Synthetic Biology (23977000), 2021, v. 6, n. 1, p. 1, doi. 10.1093/synbio/ysab019

By:

Svoboda, Jessee;
Cisneros, Brenda;
Philmus, Benjamin

Publication type:

Article

Riboswitch identification using Ligase-Assisted Selection for the Enrichment of Responsive Ribozymes (LigASERR).

Published in:

Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysz019

By:

Haines, Matthew C;
Storch, Marko;
Oyarzún, Diego A;
Stan, Guy-Bart;
Baldwin, Geoff S

Publication type:

Article

Expanding the toolbox of synthetic riboswitches with guanine-dependent aptazymes.

Published in:

Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysy022

By:

Stifel, Julia;
Spöring, Maike;
Hartig, Jörg Steffen

Publication type:

Article

Guanidine production by plant homoarginine-6-hydroxylases.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.91458

By:

Funck, Dietmar;
Sinn, Malte;
Forlani, Giuseppe;
Hartig, Jörg S.

Publication type:

Article

BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction.

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00366

By:

Townsley, Brad T.;
Covington, Michael F.;
Ichihashi, Yasunori;
Zumstein, Kristina;
Sinha, Neelima R.

Publication type:

Article

AliNA – a deep learning program for RNA secondary structure prediction.

Published in:

Molecular Informatics, 2023, v. 42, n. 12, p. 1, doi. 10.1002/minf.202300113

By:

Nasaev, Shamsudin S.;
Mukanov, Artem R.;
Kuznetsov, Ivan I.;
Veselovsky, Alexander V.

Publication type:

Article

Application of supervised machine learning algorithms for the classification of regulatory RNA riboswitches.

Published in:

Briefings in Functional Genomics, 2017, v. 16, n. 2, p. 99, doi. 10.1093/bfgp/elw005

By:

Singh, Swadha;
Singh, Raghvendra

Publication type:

Article

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Published in:

Nature Chemistry, 2011, v. 3, n. 12, p. 954, doi. 10.1038/nchem.1176

By:

Kladwang, Wipapat;
VanLang, Christopher C.;
Cordero, Pablo;
Das, Rhiju

Publication type:

Article

RNA structure: Adding a second dimension.

Published in:

Nature Chemistry, 2011, v. 3, n. 12, p. 913, doi. 10.1038/nchem.1209

By:

Petzold, Katja;
Al-Hashimi, Hashim M.

Publication type:

Article

Antisense-acting riboswitches: A poorly characterized yet important model of transcriptional regulation in prokaryotic organisms.

Published in:

PLoS ONE, 2023, v. 18, n. 2, p. 1, doi. 10.1371/journal.pone.0281744

By:

Serrano-Gutiérrez, Mariela;
Merino, Enrique

Publication type:

Article

Carba‐Sugar Analogs of Glucosamine‐6‐Phosphate: New Activators for the glmS Riboswitch.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 3, p. 1, doi. 10.1002/chem.202202378

By:

Stängle, David;
Silkenath, Bjarne;
Gehle, Paul;
Esser, Anna;
Mayer, Günter;
Wittmann, Valentin

Publication type:

Article

Switchable Fluorescent Light‐Up Aptamers Based on Riboswitch Architectures.

Published in:

Angewandte Chemie, 2023, v. 135, n. 41, p. 1, doi. 10.1002/ange.202302858

By:

Wang, Tianhe;
Simmel, Friedrich C.

Publication type:

Article

Riboswitch Mechanisms: New Tricks for an Old Dog.

Published in:

Biochemistry (00062979), 2021, v. 86, n. 8, p. 962, doi. 10.1134/S0006297921080071

By:

Ariza-Mateos, Ascensión;
Nuthanakanti, Ashok;
Serganov, Alexander

Publication type:

Article

Fluorescent riboswitch-controlled biosensors for the genome scale analysis of metabolic pathways.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-61980-w

By:

Michaud, A.;
Garneau, D.;
Côté, J.-P.;
Lafontaine, D. A.

Publication type:

Article

Thiamine metabolism genes in diatoms are not regulated by thiamine despite the presence of predicted riboswitches.

Published in:

New Phytologist, 2022, v. 235, n. 5, p. 1853, doi. 10.1111/nph.18296

By:

Llavero‐Pasquina, Marcel;
Geisler, Katrin;
Holzer, Andre;
Mehrshahi, Payam;
Mendoza‐Ochoa, Gonzalo I.;
Newsad, Shelby A.;
Davey, Matthew P.;
Smith, Alison G.

Publication type:

Article

Transcriptome Sequencing of Listeria monocytogenes Reveals Major Gene Expression Changes in Response to Lactic Acid Stress Exposure but a Less Pronounced Response to Oxidative Stress.

Published in:

Frontiers in Microbiology, 2020, v. 10, p. 1, doi. 10.3389/fmicb.2019.03110

By:

Cortes, Bienvenido W.;
Naditz, Annabel L.;
Anast, Justin M.;
Schmitz-Esser, Stephan

Publication type:

Article

ERCC1, RRM1 and BRCA1 mRNA expression levels and clinical outcome of advanced non-small cell lung cancer.

Published in:

2011

By:

Su, Chunxia;
Zhou, Songwen;
Zhang, Ling;
Ren, Shengxiang;
Xu, Jianfang;
Zhang, Jie;
Lv, Meijun;
Zhou, Caicun

Publication type:

journal article

A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27790-8

By:

Schroeder, Griffin M.;
Cavender, Chapin E.;
Blau, Maya E.;
Jenkins, Jermaine L.;
Mathews, David H.;
Wedekind, Joseph E.

Publication type:

Article

Switching at the ribosome: riboswitches need rProteins as modulators to regulate translation.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25024-5

By:

de Jesus, Vanessa;
Qureshi, Nusrat S.;
Warhaut, Sven;
Bains, Jasleen K.;
Dietz, Marina S.;
Heilemann, Mike;
Schwalbe, Harald;
Fürtig, Boris

Publication type:

Article

Correction: Tickner, Z.J.; Farzan, M. Riboswitches for Controlled Expression of Therapeutic Transgenes Delivered by Adeno-Associated Viral Vectors. Pharmaceuticals 2021, 14 , 554.

Published in:

2021

By:

Tickner, Zachary J.;
Farzan, Michael

Publication type:

Correction Notice

Riboswitches for Controlled Expression of Therapeutic Transgenes Delivered by Adeno-Associated Viral Vectors.

Published in:

Pharmaceuticals (14248247), 2021, v. 14, n. 6, p. 554, doi. 10.3390/ph14060554

By:

Tickner, Zachary J.;
Farzan, Michael

Publication type:

Article

Aptamers in Bordeaux, 24-25 June 2016.

Published in:

Pharmaceuticals (14248247), 2017, v. 10, n. 1, p. 14, doi. 10.3390/ph10010014

By:

Toulmé, Jean-Jacques;
Giangrande, Paloma H.;
Mayer, Günter;
Suess, Beatrix;
Ducongé, Frédéric;
Sullenger, Bruce;
de Franciscis, Vittorio;
Darfeuille, Fabien;
Peyrin, Eric

Publication type:

Article

Detection of Immunoglobulin E with a Graphene-Based Field-Effect Transistor Aptasensor.

Published in:

Journal of Sensors, 2018, p. 1, doi. 10.1155/2018/3019259

By:

Lan, Yi;
Farid, Sidra;
Meshik, Xenia;
Xu, Ke;
Choi, Min;
Ranginwala, Saadia;
Wang, Yung Yu;
Burke, Peter;
Dutta, Mitra;
Stroscio, Michael A.

Publication type:

Article

Insight into the functional versatility of RNA through model-making with applications to data fitting.

Published in:

Quarterly Reviews of Biophysics, 2007, v. 40, n. 1, p. 55, doi. 10.1017/S0033583507004593

By:

Bevilacqua, Philip C.;
Cerrone-Szakal, Andrea L.;
Siegfried, Nathan A.

Publication type:

Article

Transport of Magnesium by a Bacterial Nramp-Related Gene.

Published in:

PLoS Genetics, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pgen.1004429

By:

Shin, Jung-Ho;
Wakeman, Catherine A.;
Goodson, Jonathan R.;
Rodionov, Dmitry A.;
Freedman, Benjamin G.;
Senger, Ryan S.;
Winkler, Wade C.

Publication type:

Article

Comparative Study between Transcriptionally- and Translationally-Acting Adenine Riboswitches Reveals Key Differences in Riboswitch Regulatory Mechanisms.

Published in:

PLoS Genetics, 2011, v. 7, n. 1, p. 1, doi. 10.1371/journal.pgen.1001278

By:

Lemay, Jean-François;
Desnoyers, Guillaume;
Blouin, Simon;
Heppell, Benoit;
Bastet, Laurène;
St-Pierre, Patrick;
Massé, Eric;
Lafontaine, Daniel A.

Publication type:

Article

A magnesium-induced triplex pre-organizes the SAM-II riboswitch.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005406

By:

Roy, Susmita;
Lammert, Heiko;
Hayes, Ryan L.;
Chen, Bin;
LeBlanc, Regan;
Dayie, T. Kwaku;
Onuchic, José N.;
Sanbonmatsu, Karissa Y.

Publication type:

Article

Theophylline-Dependent Riboswitch as a Novel Genetic Tool for Strict Regulation of Protein Expression in Cyanobacterium Synechococcus elongatus PCC 7942.

Published in:

Plant & Cell Physiology, 2013, v. 54, n. 10, p. 1724, doi. 10.1093/pcp/pct115

By:

Nakahira, Yoichi;
Ogawa, Atsushi;
Asano, Hiroyuki;
Oyama, Tokitaka;
Tozawa, Yuzuru

Publication type:

Article

Bacillus subtilis ypaA gene regulation mechanism by FMN riboswitch.

Published in:

Russian Journal of Genetics, 2014, v. 50, n. 3, p. 319, doi. 10.1134/S1022795414030089

By:

Sklyarova, S.;
Mironov, A.

Publication type:

Article

A c-di-AMP riboswitch controlling kdpFABC operon transcription regulates the potassium transporter system in Bacillus thuringiensis.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0414-6

By:

Wang, Xun;
Cai, Xia;
Ma, Hongdan;
Yin, Wen;
Zhu, Li;
Li, Xinfeng;
Lim, Heon M.;
Chou, Shan-Ho;
He, Jin

Publication type:

Article

Enzymatic Probing Analysis of an Engineered Riboswitch Reveals Multiple off Conformations.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2011, v. 30, n. 9, p. 696, doi. 10.1080/15257770.2011.597367

By:

Muranaka, Norihito;
Sharma, Vandana;
Yokobayashi, Yohei

Publication type:

Article

Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 11, p. 1607, doi. 10.3390/antibiotics12111607

By:

Pavlova, Nikolet;
Traykovska, Martina;
Penchovsky, Robert

Publication type:

Article

A Riboswitch-Driven Era of New Antibacterials.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1243, doi. 10.3390/antibiotics11091243

By:

Giarimoglou, Nikoleta;
Kouvela, Adamantia;
Maniatis, Alexandros;
Papakyriakou, Athanasios;
Zhang, Jinwei;
Stamatopoulou, Vassiliki;
Stathopoulos, Constantinos

Publication type:

Article

Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1177, doi. 10.3390/antibiotics11091177

By:

Pavlova, Nikolet;
Penchovsky, Robert

Publication type:

Article

Riboswitches as Drug Targets for Antibiotics.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 1, p. 45, doi. 10.3390/antibiotics10010045

By:

Panchal, Vipul;
Brenk, Ruth

Publication type:

Article

Co‐crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X‐ray free‐electron laser.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2019, v. 75, n. 7, p. 496, doi. 10.1107/S2053230X19008549

By:

Jones, Christopher;
Tran, Brandon;
Conrad, Chelsie;
Stagno, Jason;
Trachman, Robert;
Fischer, Pontus;
Meents, Alke;
Ferré-D'Amaré, Adrian

Publication type:

Article

Lithium-sensing riboswitch classes regulate expression of bacterial cation transporter genes.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-20695-6

By:

White, Neil;
Sadeeshkumar, Harini;
Sun, Anna;
Sudarsan, Narasimhan;
Breaker, Ronald R.

Publication type:

Article

Aptamers, Riboswitches, and Ribozymes in S. cerevisiae Synthetic Biology.

Published in:

Life (2075-1729), 2021, v. 11, n. 3, p. 248, doi. 10.3390/life11030248

By:

Ge, Huanhuan;
Marchisio, Mario Andrea;
Stano, Pasquale;
Kato, Yusuke;
Lou, Chunbo

Publication type:

Article

Non-Conserved Residues in Clostridium acetobutylicum tRNA<sup>Ala</sup> Contribute to tRNA Tuning for Efficient Antitermination of the alaS T Box Riboswitch.

Published in:

Life (2075-1729), 2015, v. 5, n. 4, p. 1567, doi. 10.3390/life5041567

By:

Liang-Chun Liu;
Grundy, Frank J.;
Henkin, Tina M.

Publication type:

Article