Works matching DE "RIBOSWITCHES"

Results: 236

Ancient, giant riboswitches at atomic resolution.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1208, doi. 10.1038/nsmb.2453

By:

Breaker, Ronald R

Publication type:

Article

Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1182, doi. 10.1038/nsmb.2405

By:

Peselis, Alla;
Serganov, Alexander

Publication type:

Article

The export factor Yra1 modulates mRNA 3? end processing.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 10, p. 1164, doi. 10.1038/nsmb.2126

By:

Johnson, Sara A;
Kim, Hyunmin;
Erickson, Benjamin;
Bentley, David L

Publication type:

Article

The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 359, doi. 10.1038/nsmb.1989

By:

Watson, Peter Y.;
Fedor, Martha J.

Publication type:

Article

Bacterial physiology: Dual-action riboswitch.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 1, p. 5, doi. 10.1038/nrmicro2945

By:

Jermy, Andrew

Publication type:

Article

Bacterial transcription: Rho gets to grips with the riboswitch.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 5, p. 313, doi. 10.1038/nrmicro2791

By:

Kåhrström, Christina Tobin

Publication type:

Article

Carba‐Sugar Analogs of Glucosamine‐6‐Phosphate: New Activators for the glmS Riboswitch.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 3, p. 1, doi. 10.1002/chem.202202378

By:

Stängle, David;
Silkenath, Bjarne;
Gehle, Paul;
Esser, Anna;
Mayer, Günter;
Wittmann, Valentin

Publication type:

Article

Tuning Riboswitch-Mediated Gene Regulation by Rational Control of Aptamer Ligand Binding Properties.

Published in:

Angewandte Chemie, 2015, v. 127, n. 3, p. 919, doi. 10.1002/ange.201407385

By:

Rode, Ambadas B.;
Endoh, Tamaki;
Sugimoto, Naoki

Publication type:

Article

Top-Beiträge aus unseren Schwesterzeitschriften: Angew. Chem. 30/2014.

Published in:: Angewandte Chemie, 2014, v. 126, n. 30, p. 7832, doi. 10.1002/ange.201483013
Publication type:: Article

Top-Beiträge aus unseren Schwesterzeitschriften: Angew. Chem. 28/2014.

Published in:: Angewandte Chemie, 2014, v. 126, n. 28, p. 7238, doi. 10.1002/ange.201482813
Publication type:: Article

A Synthetic Riboswitch that Operates using a Rationally Designed Ligand-RNA Pair.

Published in:

Angewandte Chemie, 2013, v. 125, n. 38, p. 10160, doi. 10.1002/ange.201303370

By:

Dohno, Chikara;
Kohyama, Izumi;
Kimura, Maki;
Hagihara, Masaki;
Nakatani, Kazuhiko

Publication type:

Article

SwiSpot: modeling riboswitches by spotting out switching sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3252, doi. 10.1093/bioinformatics/btw401

By:

Barsacchi, Marco;
Novoa, Eva Maria;
Kellis, Manolis;
BechinI, Alessio

Publication type:

Article

Riboswitch Scanner: an efficient pHMM-based web-server to detect riboswitches in genomic sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 776, doi. 10.1093/bioinformatics/btv640

By:

Mukherjee, Sumit;
Sengupta, Supratim

Publication type:

Article

A new approach for detecting riboswitches in DNA sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3012, doi. 10.1093/bioinformatics/btu479

By:

Havill, Jessen T.;
Bhatiya, Chinmoy;
Johnson, Steven M.;
Sheets, Joseph D.;
Thompson, Jeffrey S.

Publication type:

Article

Finding stable local optimal RNA secondary structures.

Published in:

Bioinformatics, 2011, v. 27, n. 21, p. 2994, doi. 10.1093/bioinformatics/btr510

By:

Li, Yuan;
Zhang, Shaojie

Publication type:

Article

AliNA – a deep learning program for RNA secondary structure prediction.

Published in:

Molecular Informatics, 2023, v. 42, n. 12, p. 1, doi. 10.1002/minf.202300113

By:

Nasaev, Shamsudin S.;
Mukanov, Artem R.;
Kuznetsov, Ivan I.;
Veselovsky, Alexander V.

Publication type:

Article

Attempted use of PACE for riboswitch discovery generates three new translational theophylline riboswitch side products.

Published in:

BMC Research Notes, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13104-018-3965-6

By:

Shaver, Zachary M.;
Bent, Stephanie S.;
Bilby, Steven R.;
Brown, Michael;
Buser, Anna;
Cuellar, Itzayana G.;
Davis, Athena J.;
Doolan, Lindsay;
Enriquez, Fatima C.;
Estrada, Autumn;
Herner, Shelby;
Herron, J. Cody;
Hunn, Andrew M.;
Hunter, Madison;
Johnston, Hartlee;
Koucky, Owen;
Mackley, Christian C.;
Maghini, Dylan;
Mattoon, Devin;
McDonald, Haden T.

Publication type:

Article

Spotlights on our sister journals: Eur. J. Org. Chem. 22/2014.

Published in:: European Journal of Organic Chemistry, 2014, v. 2014, n. 22, p. 4684, doi. 10.1002/ejoc.201490061
Publication type:: Article

Attenuator LRR – a regulatory tool for modulating gene expression in Gram‐positive bacteria.

Published in:

Microbial Biotechnology, 2021, v. 14, n. 6, p. 2538, doi. 10.1111/1751-7915.13797

By:

Cai, Xia;
Wang, Qian;
Fang, Yu;
Yao, Die;
Zhan, Yunda;
An, Baoju;
Yan, Bing;
Cai, Jun

Publication type:

Article

Engineering an inducible gene expression system for Bacillus subtilis from a strong constitutive promoter and a theophylline-activated synthetic riboswitch.

Published in:

Microbial Cell Factories, 2016, v. 15, p. 1, doi. 10.1186/s12934-016-0599-z

By:

Wenjing Cui;
Laichuang Han;
Jintao Cheng;
Zhongmei Liu;
Li Zhou;
Junling Guo;
Zhemin Zhou

Publication type:

Article

Structural Features of 5′ Untranslated Region in Translational Control of Eukaryotes.

Published in:

2025

By:

Razumova, Elizaveta;
Makariuk, Aleksandr;
Dontsova, Olga;
Shepelev, Nikita;
Rubtsova, Maria

Publication type:

Literature Review

Functional diversity of c-di-GMP receptors in prokaryotic and eukaryotic systems.

Published in:

Cell Communication & Signaling, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12964-023-01263-5

By:

Khan, Fazlurrahman;
Jeong, Geum-Jae;
Tabassum, Nazia;
Kim, Young-Mog

Publication type:

Article

Identification, variation and transcription of pneumococcal repeat sequences.

Published in:

BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-120

By:

Croucher, Nicholas J;
Vernikos, Georgios S;
Parkhill, Julian;
Bentley, Stephen D

Publication type:

Article

Methionine Biosynthesis in Staphylococcus aureus Is Tightly Controlled by a Hierarchical Network Involving an Initiator tRNA-Specific T-box Riboswitch.

Published in:

PLoS Pathogens, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.ppat.1003606

By:

Schoenfelder, Sonja M. K.;
Marincola, Gabriella;
Geiger, Tobias;
Goerke, Christiane;
Wolz, Christiane;
Ziebuhr, Wilma

Publication type:

Article

Selective small-molecule inhibition of an RNA structural element.

Published in:

Nature, 2015, v. 526, n. 7575, p. 672, doi. 10.1038/nature15542

By:

Howe, John A.;
Wang, Hao;
Fischmann, Thierry O.;
Balibar, Carl J.;
Xiao, Li;
Galgoci, Andrew M.;
Malinverni, Juliana C.;
Mayhood, Todd;
Villafania, Artjohn;
Nahvi, Ali;
Murgolo, Nicholas;
Barbieri, Christopher M.;
Mann, Paul A.;
Carr, Donna;
Xia, Ellen;
Zuck, Paul;
Riley, Dan;
Painter, Ronald E.;
Walker, Scott S.;
Sherborne, Brad

Publication type:

Article

Riboswitch Mechanisms: New Tricks for an Old Dog.

Published in:

Biochemistry (00062979), 2021, v. 86, n. 8, p. 962, doi. 10.1134/S0006297921080071

By:

Ariza-Mateos, Ascensión;
Nuthanakanti, Ashok;
Serganov, Alexander

Publication type:

Article

A c-di-AMP riboswitch controlling kdpFABC operon transcription regulates the potassium transporter system in Bacillus thuringiensis.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0414-6

By:

Wang, Xun;
Cai, Xia;
Ma, Hongdan;
Yin, Wen;
Zhu, Li;
Li, Xinfeng;
Lim, Heon M.;
Chou, Shan-Ho;
He, Jin

Publication type:

Article

Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120.

Published in:

Synthetic Biology (23977000), 2021, v. 6, n. 1, p. 1, doi. 10.1093/synbio/ysab019

By:

Svoboda, Jessee;
Cisneros, Brenda;
Philmus, Benjamin

Publication type:

Article

Riboswitch identification using Ligase-Assisted Selection for the Enrichment of Responsive Ribozymes (LigASERR).

Published in:

Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysz019

By:

Haines, Matthew C;
Storch, Marko;
Oyarzún, Diego A;
Stan, Guy-Bart;
Baldwin, Geoff S

Publication type:

Article

Expanding the toolbox of synthetic riboswitches with guanine-dependent aptazymes.

Published in:

Synthetic Biology (23977000), 2019, v. 4, n. 1, p. N.PAG, doi. 10.1093/synbio/ysy022

By:

Stifel, Julia;
Spöring, Maike;
Hartig, Jörg Steffen

Publication type:

Article

Enzymatic Probing Analysis of an Engineered Riboswitch Reveals Multiple off Conformations.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2011, v. 30, n. 9, p. 696, doi. 10.1080/15257770.2011.597367

By:

Muranaka, Norihito;
Sharma, Vandana;
Yokobayashi, Yohei

Publication type:

Article

Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.

Published in:

Journal of Cell Biology, 2015, v. 209, n. 4, p. 609, doi. 10.1083/jcb.201411032

By:

Smith, Carlas S.;
Preibisch, Stephan;
Joseph, Aviva;
Abrahamsson, Sara;
Rieger, Bernd;
Myers, Eugene;
Singer, Robert H.;
Grunwald, David

Publication type:

Article

Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 11, p. 1607, doi. 10.3390/antibiotics12111607

By:

Pavlova, Nikolet;
Traykovska, Martina;
Penchovsky, Robert

Publication type:

Article

A Riboswitch-Driven Era of New Antibacterials.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1243, doi. 10.3390/antibiotics11091243

By:

Giarimoglou, Nikoleta;
Kouvela, Adamantia;
Maniatis, Alexandros;
Papakyriakou, Athanasios;
Zhang, Jinwei;
Stamatopoulou, Vassiliki;
Stathopoulos, Constantinos

Publication type:

Article

Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1177, doi. 10.3390/antibiotics11091177

By:

Pavlova, Nikolet;
Penchovsky, Robert

Publication type:

Article

Riboswitches as Drug Targets for Antibiotics.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 1, p. 45, doi. 10.3390/antibiotics10010045

By:

Panchal, Vipul;
Brenk, Ruth

Publication type:

Article

Co‐crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X‐ray free‐electron laser.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2019, v. 75, n. 7, p. 496, doi. 10.1107/S2053230X19008549

By:

Jones, Christopher;
Tran, Brandon;
Conrad, Chelsie;
Stagno, Jason;
Trachman, Robert;
Fischer, Pontus;
Meents, Alke;
Ferré-D'Amaré, Adrian

Publication type:

Article

A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27790-8

By:

Schroeder, Griffin M.;
Cavender, Chapin E.;
Blau, Maya E.;
Jenkins, Jermaine L.;
Mathews, David H.;
Wedekind, Joseph E.

Publication type:

Article

Switching at the ribosome: riboswitches need rProteins as modulators to regulate translation.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25024-5

By:

de Jesus, Vanessa;
Qureshi, Nusrat S.;
Warhaut, Sven;
Bains, Jasleen K.;
Dietz, Marina S.;
Heilemann, Mike;
Schwalbe, Harald;
Fürtig, Boris

Publication type:

Article

An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0134262

By:

Drory Retwitzer, Matan;
Kifer, Ilona;
Sengupta, Supratim;
Yakhini, Zohar;
Barash, Danny

Publication type:

Article

Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0113714

By:

Leyn, Semen A.;
Suvorova, Inna A.;
Kholina, Tatiana D.;
Sherstneva, Sofia S.;
Novichkov, Pavel S.;
Gelfand, Mikhail S.;
Rodionov, Dmitry A.

Publication type:

Article

Insights into Ligand Binding to PreQ1 Riboswitch Aptamer from Molecular Dynamics Simulations.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092247

By:

Gong, Zhou;
Zhao, Yunjie;
Chen, Changjun;
Duan, Yong;
Xiao, Yi

Publication type:

Article

RNA-Seq Analysis of Mycobacterium avium Non-Coding Transcriptome.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074209

By:

Ignatov, Dmitriy;
Malakho, Sofia;
Majorov, Konstantin;
Skvortsov, Timofey;
Apt, Alexander;
Azhikina, Tatyana

Publication type:

Article

Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0073984

By:

Appasamy, Sri D.;
Ramlan, Effirul Ikhwan;
Firdaus-Raih, Mohd

Publication type:

Article

Selection of RNAs for Constructing “Lighting-UP” Biomolecular Switches in Response to Specific Small Molecules.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060222

By:

Endoh, Tamaki;
Sugimoto, Naoki

Publication type:

Article

Computational Study of Unfolding and Regulation Mechanism of preQ1 Riboswitches.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045239

By:

Zhou Gong;
Yunjie Zhao;
Changjun Chen;
Yi Xiao;
Uversky, Vladimir N.

Publication type:

Article

Role of Single Nucleotide Polymorphisms of KIF1B Gene in HBV-Associated Viral Hepatitis.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045128

By:

Al-Qahtani, Ahmed;
Al-Anazi, Mashael;
Viswan, Nisha A.;
Khalaf, Nisreen;
Abdo, Ayman A.;
Sanai, Faisal M.;
Al-Ashgar, Hamad;
Al-Ahdal, Mohammed;
Bouchard, Michael

Publication type:

Article

A Riboswitch-Based Inducible Gene Expression System for Mycobacteria.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029266

By:

Seeliger, Jessica C.;
Topp, Shana;
Sogi, Kimberly M.;
Previti, Mary L.;
Gallivan, Justin P.;
Bertozzi, Carolyn R.

Publication type:

Article

Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA.

Published in:

PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0016036

By:

Tao Huang;
Sibao Wan;
Zhongping Xu;
Yufang Zheng;
Kai-Yan Feng;
Hai-Peng Li;
Xiangyin Kong;
Yu-Dong Cai

Publication type:

Article

Prediction and Testing of Biological Networks Underlying Intestinal Cancer.

Published in:

PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0012497

By:

Patel, Vishal N.;
Bebek, Gurkan;
Mariadason, John M.;
Donghai Wang;
Augenlicht, Leonard H.;
Chance, Mark R.

Publication type:

Article