Works matching DE "RIBONUCLEOTIDES"

Results: 156

Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 4, p. 291, doi. 10.1038/nsmb.2989

By:

Williams, Jessica S;
Clausen, Anders R;
Lujan, Scott A;
Marjavaara, Lisette;
Clark, Alan B;
Burgers, Peter M;
Chabes, Andrei;
Kunkel, Thomas A

Publication type:

Article

Ribonucleotides in DNA: hidden in plain sight.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 176, doi. 10.1038/nsmb.2981

By:

Jinks-Robertson, Sue;
Klein, Hannah L

Publication type:

Article

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 185, doi. 10.1038/nsmb.2957

By:

Clausen, Anders R;
Lujan, Scott A;
Burkholder, Adam B;
Orebaugh, Clinton D;
Williams, Jessica S;
Clausen, Maryam F;
Malc, Ewa P;
Mieczkowski, Piotr A;
Fargo, David C;
Smith, Duncan J;
Kunkel, Thomas A

Publication type:

Article

Enzymatic Syntheses and Applications of Fluorescent Cyclic Dinucleotides.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 27, p. 6076, doi. 10.1002/chem.202001194

By:

Li, Yao;
Ludford, Paul T.;
Fin, Andrea;
Rovira, Alexander R.;
Tor, Yitzhak

Publication type:

Article

Chemical Synthesis of Mono- and Bis-Labeled Pre-MicroRNAs.

Published in:

Angewandte Chemie, 2013, v. 125, n. 46, p. 12250, doi. 10.1002/ange.201304986

By:

Pradère, Ugo;
Brunschweiger, Andreas;
Gebert, Luca F. R.;
Lucic, Matije;
Roos, Martina;
Hall, Jonathan

Publication type:

Article

Imidazoleacetic acid-ribotide in vestibulo-sympathetic pathway neurons.

Published in:

Experimental Brain Research, 2016, v. 234, n. 10, p. 2747, doi. 10.1007/s00221-016-4725-2

By:

Holstein, Gay;
Friedrich, Victor;
Martinelli, Giorgio

Publication type:

Article

miR-211 regulates the expression of RRM2 in tumoral metastasis and recurrence in colorectal cancer patients with a k-ras gene mutation.

Published in:

Oncology Letters, 2018, v. 15, n. 5, p. 8107, doi. 10.3892/ol.2018.8295

By:

Chang, Chiu-Chun;
Lin, Chun-Che;
Wang, Chia-Hung;
Huang, Chi-Chou;
Ke, Tao-Wei;
Wei, Po-Li;
Yeh, Ken-Tu;
Hsu, Kai-Cheng;
Hsu, Nan-Yung;
Cheng, Ya-Wen

Publication type:

Article

Implications of Tioguanine Dosing in IBD Patients with a TPMT Deficiency.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 10, p. 1054, doi. 10.3390/metabo13101054

By:

Deben, Debbie S.;
Derijks, Luc J. J.;
van den Bosch, Bianca J. C.;
Creemers, Rob H.;
van Nunen, Annick;
van Bodegraven, Adriaan A.;
Wong, Dennis R.

Publication type:

Article

Ribonucleotides differentially modulate oral glutamate detection thresholds.

Published in:

Chemical Senses, 2024, v. 49, p. 1, doi. 10.1093/chemse/bjad049

By:

Amado, Nicholas J;
Hanselman, Emily C;
Harmon, Caroline P;
Deng, Daiyong;
Alarcon, Suzanne M;
Sharples, Ashley A;
Breslin, Paul A S

Publication type:

Article

An Examination of the Role of L-Glutamate and Inosine 5'-Monophosphate in Hedonic Taste-Guided Behavior by Mice Lacking the T1R1 + T1R3 Receptor.

Published in:

Chemical Senses, 2017, v. 42, n. 5, p. 393, doi. 10.1093/chemse/bjx015

By:

Blonde, Ginger D.;
Spector, Alan C.

Publication type:

Article

New insights into the plant epitranscriptome.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 20, p. 4659, doi. 10.1093/jxb/ery262

By:

Vandivier, Lee E;
Gregory, Brian D

Publication type:

Article

Leishmania Induces Survival, Proliferation and Elevated Cellular dNTP Levels in Human Monocytes Promoting Acceleration of HIV Co-Infection.

Published in:

PLoS Pathogens, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.ppat.1002635

By:

Mock, David J.;
Hollenbaugh, Joseph A.;
Daddacha, Waaqo;
Overstreet, Michael G.;
Lazarski, Chris A.;
Fowell, Deborah J.;
Baek Kim

Publication type:

Article

Multiple Non-Canonical Base-Stacking Interactions as One of the Major Determinants of RNA Tertiary Structure Organization.

Published in:

Biochemistry (00062979), 2023, v. 88, n. 6, p. 792, doi. 10.1134/S000629792306007X

By:

Metelev, Valeriy G.;
Baulin, Eugene F.;
Bogdanov, Alexey A.

Publication type:

Article

In Situ Imidazole Activation of Ribonucleotides for Abiotic RNA Oligomerization Reactions.

Published in:

Origins of Life & Evolution of the Biosphere, 2015, v. 45, n. 1/2, p. 31, doi. 10.1007/s11084-015-9412-y

By:

Burcar, Bradley;
Jawed, Mohsin;
Shah, Hari;
McGown, Linda

Publication type:

Article

Possible Role of Metal(II) Octacyanomolybdate(IV) in Chemical Evolution: Interaction with Ribose Nucleotides.

Published in:

Origins of Life & Evolution of the Biosphere, 2013, v. 43, n. 1, p. 1, doi. 10.1007/s11084-012-9319-9

By:

Kumar, Anand;
Kamaluddin

Publication type:

Article

A ribonucleotide Origin for Life - Fluctuation and Near-ideal Reactions.

Published in:

Origins of Life & Evolution of the Biosphere, 2013, v. 43, n. 1, p. 19, doi. 10.1007/s11084-013-9325-6

By:

Yarus, Michael

Publication type:

Article

Synthesis of the Oligoribonucleotides Incorporating 8-Oxo-Guanosine and Evaluation of their Base Pairing Properties.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2013, v. 32, n. 3, p. 124, doi. 10.1080/15257770.2013.767461

By:

Koga, Yohei;
Taniguchi, Yosuke;
Sasaki, Shigeki

Publication type:

Article

Efficient discrimination against RNA-containing primers by human DNA polymerase ε.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14602-2

By:

Lisova, Alisa E.;
Baranovskiy, Andrey G.;
Morstadt, Lucia M.;
Babayeva, Nigar D.;
Tahirov, Tahir H.

Publication type:

Article

Concomitant 5-aminosalicylic acid treatment does not affect 6-thioguanine nucleotide levels in patients with inflammatory bowel disease on thiopurines.

Published in:

Annals of Gastroenterology, 2023, v. 36, n. 6, p. 637, doi. 10.20524/aog.2023.0832

By:

Looser, Rahel;
Doulberis, Michael;
Rossel, Jean-Benoit;
Franc, Yannick;
Müller, Daniel;
Biedermann, Luc;
Rogler, Gerhard

Publication type:

Article

Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26989-z

By:

Ageely, Eman A.;
Chilamkurthy, Ramadevi;
Jana, Sunit;
Abdullahu, Leonora;
O'Reilly, Daniel;
Jensik, Philip J.;
Damha, Masad J.;
Gagnon, Keith T.

Publication type:

Article

Structural basis for proficient oxidized ribonucleotide insertion in double strand break repair.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24486-x

By:

Jamsen, Joonas A.;
Sassa, Akira;
Perera, Lalith;
Shock, David D.;
Beard, William A.;
Wilson, Samuel H.

Publication type:

Article

Metabolomics Analysis Reveals that AICAR Affects Glycerolipid, Ceramide and Nucleotide Synthesis Pathways in INS-1 Cells.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129029

By:

ElAzzouny, Mahmoud A.;
Evans, Charles R.;
Burant, Charles F;
Kennedy, Robert T.

Publication type:

Article

L-Amino Acids Elicit Diverse Response Patterns in Taste Sensory Cells: A Role for Multiple Receptors.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130088

By:

Pal Choudhuri, Shreoshi;
Delay, Rona J.;
Delay, Eugene R.

Publication type:

Article

RNase HI Is Essential for Survival of Mycobacterium smegmatis.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126260

By:

Minias, Alina E.;
Brzostek, Anna M.;
Korycka- Machala, Malgorzata;
Dziadek, Bozena;
Minias, Piotr;
Rajagopalan, Malini;
Madiraju, Murty;
Dziadek, Jaroslaw

Publication type:

Article

Catalytic Analysis of APOBEC3G Involving Real-Time NMR Spectroscopy Reveals Nucleic Acid Determinants for Deamination.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0124142

By:

Kamba, Keisuke;
Nagata, Takashi;
Katahira, Masato

Publication type:

Article

MicroRNA Modulation Induced by AICA Ribonucleotide in J1 Mouse ES Cells.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0103724

By:

Shi, Xiaoyan;
YongyanWu;
Ai, Zhiying;
Du, Juan;
Cao, Lixia;
Guo, Zekun;
Zhang, Yong

Publication type:

Article

Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight from Xenon Trapping and Statistical Coupling Analysis.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0077781

By:

Tanwar, Ajay Singh;
Goyal, Venuka Durani;
Choudhary, Deepanshu;
Panjikar, Santosh;
Anand, Ruchi

Publication type:

Article

Structural Phylogenomics Reveals Gradual Evolutionary Replacement of Abiotic Chemistries by Protein Enzymes in Purine Metabolism.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059300

By:

Caetano-Anollés, Kelsey;
Caetano-Anollés, Gustavo

Publication type:

Article

A Kinome Screen Identifies Checkpoint Kinase 1 (CHK1) as a Sensitizer for RRM1-Dependent Gemcitabine Efficacy.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058091

By:

Zhou, Jun;
Chen, Zhengming;
Malysa, Agnes;
Li, Xin;
Oliveira, Paula;
Zhang, Yingtao;
Bepler, Gerold

Publication type:

Article

Studies of Ribonucleotide Reductase in Crucian Carp--An Oxygen Dependent Enzyme in an Anoxia Tolerant Vertebrate.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042784

By:

Sandvik, Guro K.;
Tomter, Ane B.;
Bergan, Jonas;
Zoppellaro, Giorgio;
Barra, Anne-Laure;
Røhr, Åsmund K.;
Kolberg, Matthias;
Ellefsen, Stian;
Andersson, K. Kristoffer;
Nilsson, Göran E.;
Croft, Anna Kristina

Publication type:

Article

Spectroscopic Studies of the Iron and Manganese Reconstituted Tyrosyl Radical in Bacillus Cereus Ribonucleotide Reductase R2 Protein.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033436

By:

Tomter, Ane B.;
Zoppellaro, Giorgio;
III, Caleb B. Bell;
Barra, Anne-Laure;
Andersen, Niels H.;
Solomon, Edward I.;
Andersson, K. Kristoffer

Publication type:

Article

Deep sequencing analysis of a strain of pecan mosaic-associated virus infecting Atractylodes macrocephala Koidz.

Published in:

Journal of Plant Pathology, 2018, v. 100, n. 2, p. 249, doi. 10.1007/s42161-018-0072-4

By:

Niu, Yanbing;
Pang, Xiaojing;
Wang, Defu;
Guo, Shang;
Liu, Yong

Publication type:

Article

In search of the mRNA modification landscape in plants.

Published in:

BMC Plant Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12870-019-2033-2

By:

Chmielowska-Bąk, Jagna;
Arasimowicz-Jelonek, Magdalena;
Deckert, Joanna

Publication type:

Article

CRISPR-Cas13a-Triggered DNAzyme Signal Amplification-Based Colorimetric miRNA Detection Method and Its Application in Evaluating the Anxiety.

Published in:

Applied Biochemistry & Biotechnology, 2024, v. 196, n. 11, p. 7896, doi. 10.1007/s12010-024-04951-1

By:

Yan, Na;
Hu, Zhiwei;
Zhang, Lingling

Publication type:

Article

Controlling Electron Rebound within Four-Base π-Stacks in Z-DNA by Changing the Sugar Moiety from Deoxy- to Ribonucleotide.

Published in:

Chemistry - A European Journal, 2014, v. 20, n. 5, p. 1223, doi. 10.1002/chem.201303930

By:

Sannohe, Yuta;
Kizaki, Seiichiro;
Kanesato, Shuhei;
Fujiwara, Ayaka;
Li, Yue;
Morinaga, Hironobu;
Tashiro, Ryu;
Sugiyama, Hiroshi

Publication type:

Article

Genetic variants influencing response to methotrexate in juvenile idiopathic arthritis and rheumatoid arthritis.

Published in:

2016

By:

Ranganathan, Prabha

Publication type:

Letter

5-Aminoimidazole-4-carboxamide ribonucleotide-transformylase and inosine-triphosphate-pyrophosphatase genes variants predict remission rate during methotrexate therapy in patients with juvenile idiopathic arthritis.

Published in:

Rheumatology International, 2015, v. 35, n. 4, p. 619, doi. 10.1007/s00296-014-3131-y

By:

Pastore, Serena;
Stocco, Gabriele;
Moressa, Valentina;
Zandonà, Luigi;
Favretto, Diego;
Malusà, Noelia;
Decorti, Giuliana;
Lepore, Loredana;
Ventura, Alessandro

Publication type:

Article

The class Ib ribonucleotide reductase from Mycobacterium tuberculosis has two active R2F subunits.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2014, v. 19, n. 6, p. 893, doi. 10.1007/s00775-014-1121-x

By:

Hammerstad, Marta;
Røhr, Åsmund;
Andersen, Niels;
Gräslund, Astrid;
Högbom, Martin;
Andersson, K.

Publication type:

Article

A novel combination treatment for fragile X syndrome predicted using computational methods.

Published in:

Brain Communications, 2024, v. 6, n. 1, p. 1, doi. 10.1093/braincomms/fcad353

By:

Chadwick, Wayne;
Angulo-Herrera, Ivan;
Cogram, Patricia;
Deacon, Robert J M;
Mason, Daniel J;
Brown, David;
Roberts, Ian;
O'Donovan, Daniel J;
Tranfaglia, Michael R;
Guilliams, Tim;
Thompson, Neil T

Publication type:

Article

Effects of Dietary Energy Density in a Fermented Total Mixed Ration Formulated with Different Ratios of Rice Straw and Cassava Pulp on 2- or 14-Day-Aged Meat Quality, Collagen, Fatty Acids, and Ribonucleotides of Native Thai Cattle Longissimus Muscle.

Published in:

Foods, 2022, v. 11, n. 14, p. 2046, doi. 10.3390/foods11142046

By:

Chaosap, Chanporn;
Lukkananukool, Achara;
Polyorach, Sineenart;
Sommart, Kritapon;
Sivapirunthep, Panneepa;
Limsupavanich, Rutcharin

Publication type:

Article

Co-evolution of specific amino acid in sigma 1.2 region and nucleotide base in the discriminator to act as sensors of small molecule effectors of transcription initiation in mycobacteria.

Published in:

Molecular Microbiology, 2013, v. 90, n. 3, p. 569, doi. 10.1111/mmi.12384

By:

Tare, Priyanka;
Mallick, Bratati;
Nagaraja, Valakunja

Publication type:

Article

Etheno adducts: from tRNA modifications to DNA adducts and back to miscoding ribonucleotides.

Published in:

Genes & Environment, 2021, v. 43, n. 1, p. 1, doi. 10.1186/s41021-021-00199-x

By:

Guengerich, F. Peter;
Ghodke, Pratibha P.

Publication type:

Article

Current perspectives on mechanisms of ribonucleotide incorporation and processing in mammalian DNA.

Published in:

Genes & Environment, 2019, v. 41, n. 1, p. N.PAG, doi. 10.1186/s41021-019-0118-7

By:

Sassa, Akira;
Yasui, Manabu;
Honma, Masamitsu

Publication type:

Article

Genetic requirements for repair of lesions caused by single genomic ribonucleotides in S phase.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36866-6

By:

Schindler, Natalie;
Tonn, Matthias;
Kellner, Vanessa;
Fung, Jia Jun;
Lockhart, Arianna;
Vydzhak, Olga;
Juretschke, Thomas;
Möckel, Stefanie;
Beli, Petra;
Khmelinskii, Anton;
Luke, Brian

Publication type:

Article

Podocytes maintain high basal levels of autophagy independent of mtor signaling.

Published in:

Autophagy, 2020, v. 16, n. 11, p. 1932, doi. 10.1080/15548627.2019.1705007

By:

Bork, Tillmann;
Liang, Wei;
Yamahara, Kosuke;
Lee, Philipp;
Tian, Zhejia;
Liu, Shuya;
Schell, Christoph;
Thedieck, Kathrin;
Hartleben, Bjoern;
Patel, Ketan;
Tharaux, Pierre-Louis;
Lenoir, Olivia;
Huber, Tobias B.

Publication type:

Article

The Importance of the Presence of a 5'-Ribonucleotide and the Contribution of the T1R1 + T1R3 Heterodimer and an Additional Low-Affinity Receptor in the Taste Detection of L-Glutamate as Assessed Psychophysically.

Published in:

Journal of Neuroscience, 2014, v. 34, n. 39, p. 13234, doi. 10.1523/JNEUROSCI.0417-14.2014

By:

Smith, Kimberly R.;
Spector, Alan C.

Publication type:

Article

Nucleotide pools dictate the identity and frequency of ribonucleotide incorporation in mitochondrial DNA.

Published in:

PLoS Genetics, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pgen.1006628

By:

Berglund, Anna-Karin;
Navarrete, Clara;
Engqvist, Martin K. M.;
Hoberg, Emily;
Szilagyi, Zsolt;
Taylor, Robert W.;
Gustafsson, Claes M.;
Falkenberg, Maria;
Clausen, Anders R.

Publication type:

Article

Biotechnological Utilization of Biodiesel-Derived Glycerol for the Production of Ribonucleotides and Microbial Biomass.

Published in:

Applied Biochemistry & Biotechnology, 2012, v. 167, n. 7, p. 2054, doi. 10.1007/s12010-012-9749-x

By:

Rivaldi, Juan;
Sarrouh, Boutros;
Branco, Ricardo;
Mancilha, Ismael;
Silva, Silvio

Publication type:

Article

Construction and characterization of ribonuclease H2 C subunit-knockout NIH3T3 cells.

Published in:

Bioscience, Biotechnology & Biochemistry, 2023, v. 87, n. 8, p. 865, doi. 10.1093/bbb/zbad077

By:

Haruka Hara;
Haruna Yano;
Kaho Akazawa;
Kana Kamoda;
Mako Kandabashi;
Misato Baba;
Teisuke Takita;
Kiyoshi Yasukawa

Publication type:

Article

Biochemical analyses of ppGpp effect on adenylosuccinate synthetases, key enzymes in purine biosynthesis in rice.

Published in:

Bioscience, Biotechnology & Biochemistry, 2014, v. 78, n. 6, p. 1022, doi. 10.1080/09168451.2014.910103

By:

Yuhta Nomura;
Akira Nozawa;
Yuzuru Tozawa

Publication type:

Article