Works matching DE "RETROTRANSPOSONS"

Results: 952

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage- specific genomic imprinting of ZDBF2.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.94502

By:

Hisato Kobayashi;
Tatsushi Igaki;
Soichiro Kumamoto;
Keisuke Tanaka;
Tomoya Takashima;
Nagaoka, So I.;
Shunsuke Suzuki;
Masaaki Hayashi;
Renfree, Marilyn B.;
Manabu Kawahara;
Shun Saito;
Toshihiro Kobayashi;
Hiroshi Nagashima;
Hitomi Matsunari;
Kazuaki Nakano;
Ayuko Uchikura;
Hiroshi Kiyonari;
Mari Kaneko;
Hiroo Imai;
Kazuhiko Nakabayashi

Publication type:

Article

miR-128 represses L1 retrotransposition by binding directly to L1 RNA.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 824, doi. 10.1038/nsmb.3090

By:

Hamdorf, Matthias;
Idica, Adam;
Zisoulis, Dimitrios G;
Gamelin, Lindsay;
Martin, Charles;
Sanders, Katie J;
Pedersen, Irene M

Publication type:

Article

The Microprocessor controls the activity of mammalian retrotransposons.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 10, p. 1173, doi. 10.1038/nsmb.2658

By:

Heras, Sara R;
Macias, Sara;
Plass, Mireya;
Fernandez, Noemí;
Cano, David;
Eyras, Eduardo;
Garcia-Perez, José L;
Cáceres, Javier F

Publication type:

Article

Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 332, doi. 10.1038/nsmb.2495

By:

Fadloun, Anas;
Le Gras, Stéphanie;
Jost, Bernard;
Ziegler-Birling, Céline;
Takahashi, Hazuki;
Gorab, Eduardo;
Carninci, Piero;
Torres-Padilla, Maria-Elena

Publication type:

Article

Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 339, doi. 10.1038/nsmb.2496

By:

Herquel, Benjamin;
Ouararhni, Khalid;
Martianov, Igor;
Le Gras, Stéphanie;
Ye, Tao;
Keime, Céline;
Lerouge, Thierry;
Jost, Bernard;
Cammas, Florence;
Losson, Régine;
Davidson, Irwin

Publication type:

Article

Association of a TDRD1 variant with spermatogenic failure susceptibility in the Han Chinese.

Published in:

Journal of Assisted Reproduction & Genetics, 2016, v. 33, n. 8, p. 1099, doi. 10.1007/s10815-016-0738-9

By:

Zhu, Xiao-Bin;
Lu, Jian-Qi;
Zhi, Er-Lei;
Zhu, Yong;
Zou, Sha-Sha;
Zhu, Zi-Jue;
Zhang, Feng;
Li, Zheng

Publication type:

Article

Development of molecular markers based on retrotransposons for the analysis of genetic variability in Moniliophthora perniciosa.

Published in:

European Journal of Plant Pathology, 2012, v. 134, n. 3, p. 497, doi. 10.1007/s10658-012-0031-4

By:

Santana, Mateus;
Araújo, Elza;
Souza, Jorge;
Mizubuti, Eduardo;
Queiroz, Marisa

Publication type:

Article

The landscape of transposable element distribution in the genome of Neotropical fish Apareiodon sp. (Characiformes: Parodontidae).

Published in:

Chromosome Research, 2025, v. 33, n. 1, p. 1, doi. 10.1007/s10577-025-09765-3

By:

de Oliveira, Fernanda Souza;
Brann, Toby;
Wolf, Ivan Rodrigo;
Nogaroto, Viviane;
Martins, Cesar;
Protasio, Anna Victoria;
Vicari, Marcelo Ricardo

Publication type:

Article

Chromosomal distribution of soybean retrotransposon SORE-1 suggests its recent preferential insertion into euchromatic regions.

Published in:

Chromosome Research, 2018, v. 26, n. 3, p. 199, doi. 10.1007/s10577-018-9579-y

By:

Nakashima, Kenta;
Abe, Jun;
Kanazawa, Akira

Publication type:

Article

Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.

Published in:

Chromosome Research, 2018, v. 26, n. 1/2, p. 45, doi. 10.1007/s10577-018-9572-5

By:

Orecchini, Elisa;
Frassinelli, Loredana;
Galardi, Silvia;
Ciafrè, Silvia Anna;
Michienzi, Alessandro

Publication type:

Article

Highly distinct chromosomal structures in cowpea ( Vigna unguiculata), as revealed by molecular cytogenetic analysis.

Published in:

Chromosome Research, 2016, v. 24, n. 2, p. 197, doi. 10.1007/s10577-015-9515-3

By:

Iwata-Otsubo, Aiko;
Lin, Jer-Young;
Gill, Navdeep;
Jackson, Scott

Publication type:

Article

Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses.

Published in:

Chromosome Research, 2015, v. 23, n. 3, p. 571, doi. 10.1007/s10577-015-9492-6

By:

Santos, Fabíola;
Guyot, Romain;
Valle, Cacilda;
Chiari, Lucimara;
Techio, Vânia;
Heslop-Harrison, Pat;
Vanzela, André

Publication type:

Article

Short interspersed DNA elements and miRNAs: a novel hidden gene regulation layer in zebrafish?

Published in:

Chromosome Research, 2015, v. 23, n. 3, p. 533, doi. 10.1007/s10577-015-9484-6

By:

Scarpato, Margherita;
Angelini, Claudia;
Cocca, Ennio;
Pallotta, Maria;
Morescalchi, Maria;
Capriglione, Teresa

Publication type:

Article

Repetitive DNA in eukaryotic genomes.

Published in:

Chromosome Research, 2015, v. 23, n. 3, p. 415, doi. 10.1007/s10577-015-9499-z

By:

Biscotti, Maria;
Olmo, Ettore;
Heslop-Harrison, J.

Publication type:

Article

Intragenomic distribution of RTE retroelements suggests intrachromosomal movement.

Published in:

Chromosome Research, 2015, v. 23, n. 2, p. 211, doi. 10.1007/s10577-014-9461-5

By:

Montiel, Eugenia;
Ruiz-Ruano, Francisco;
Cabrero, Josefa;
Marchal, Juan;
Sánchez, Antonio;
Perfectti, Francisco;
López-León, María;
Camacho, Juan

Publication type:

Article

Identification and diversity of functional centromere satellites in the wild rice species Oryza brachyantha.

Published in:

Chromosome Research, 2013, v. 21, n. 8, p. 725, doi. 10.1007/s10577-013-9374-8

By:

Yi, Chuandeng;
Zhang, Wenli;
Dai, Xibin;
Li, Xing;
Gong, Zhiyun;
Zhou, Yong;
Liang, Guohua;
Gu, Minghong

Publication type:

Article

Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons.

Published in:

Chromosome Research, 2013, v. 21, n. 5, p. 507, doi. 10.1007/s10577-013-9378-4

By:

Qi, L.;
Wu, J.;
Friebe, B.;
Qian, C.;
Gu, Y.;
Fu, D.;
Gill, B.

Publication type:

Article

Cloning and characterisation of a novel chromosome end repeat enriched with homopolymeric (dA)/(dT) DNA in Rhynchosciara americana (Diptera: Sciaridae).

Published in:

Chromosome Research, 2012, v. 20, n. 4, p. 435, doi. 10.1007/s10577-012-9287-y

By:

Fernandes, Thiago;
Madalena, Christiane;
Gorab, Eduardo

Publication type:

Article

findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies.

Published in:

Bioinformatics, 2018, v. 34, n. 4, p. 550, doi. 10.1093/bioinformatics/btx637

By:

Sun, Hequan;
Ding, Jia;
Piednoël, Mathieu;
Schneeberger, Korbinian

Publication type:

Article

MGEScan: a Galaxy-based system for identifying retrotransposons in genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2502, doi. 10.1093/bioinformatics/btw157

By:

Hyungro Lee;
Minsu Lee;
Ismail, Wazim Mohammed;
Mina Rho;
Fox, Geoffrey C.;
Sangyoon Oh;
Haixu Tang

Publication type:

Article

A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02704-y

By:

Nakano, Michiharu;
Hirakawa, Hideki;
Fukai, Eigo;
Toyoda, Atsushi;
Kajitani, Rei;
Minakuchi, Yohei;
Itoh, Takehiko;
Higuchi, Yohei;
Kozuka, Toshiaki;
Bono, Hidemasa;
Shirasawa, Kenta;
Shiraiwa, Ippei;
Sumitomo, Katsuhiko;
Hisamatsu, Tamotsu;
Shibata, Michio;
Isobe, Sachiko;
Taniguchi, Kenji;
Kusaba, Makoto

Publication type:

Article

Transposable elements: ERE and there for pluripotency.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 7, p. 439, doi. 10.1038/nrg3756

By:

Burgess, Darren J.

Publication type:

Article

Human evolution: Reprogrammed cells dissect ape retrotransposition.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 12, p. 824, doi. 10.1038/nrg3621

By:

Burgess, Darren J.

Publication type:

Article

Origin and distribution of different retrotransposons in different taxa.

Published in:

Genetics & Applications, 2018, v. 2, n. 2, p. 13, doi. 10.31383/ga.vol2iss2pp13-19

By:

Guner, Buket Cakmak;
Gozukirmizi, Nermin

Publication type:

Article

Polyploids of Brassicaceae: Genomic Insights and Assembly Strategies.

Published in:

Plants (2223-7747), 2024, v. 13, n. 15, p. 2087, doi. 10.3390/plants13152087

By:

Jeon, Donghyun;
Kim, Changsoo

Publication type:

Article

Discovering the Repeatome of Five Species Belonging to the Asteraceae Family: A Computational Study.

Published in:

Plants (2223-7747), 2023, v. 12, n. 6, p. 1405, doi. 10.3390/plants12061405

By:

Ventimiglia, Maria;
Castellacci, Marco;
Usai, Gabriele;
Vangelisti, Alberto;
Simoni, Samuel;
Natali, Lucia;
Cavallini, Andrea;
Mascagni, Flavia;
Giordani, Tommaso

Publication type:

Article

An Eruption of LTR Retrotransposons in the Autopolyploid Genomes of Chrysanthemum nankingense (Asteraceae).

Published in:

Plants (2223-7747), 2022, v. 11, n. 3, p. 315, doi. 10.3390/plants11030315

By:

He, Jun;
Yu, Zhongyu;
Jiang, Jiafu;
Chen, Sumei;
Fang, Weimin;
Guan, Zhiyong;
Liao, Yuan;
Wang, Zhenxing;
Chen, Fadi;
Wang, Haibin

Publication type:

Article

Transposons Hidden in Arabidopsis thaliana Genome Assembly Gaps and Mobilization of Non-Autonomous LTR Retrotransposons Unravelled by Nanotei Pipeline.

Published in:

Plants (2223-7747), 2021, v. 10, n. 12, p. 2681, doi. 10.3390/plants10122681

By:

Kirov, Ilya;
Merkulov, Pavel;
Dudnikov, Maxim;
Polkhovskaya, Ekaterina;
Komakhin, Roman A.;
Konstantinov, Zakhar;
Gvaramiya, Sofya;
Ermolaev, Aleksey;
Kudryavtseva, Natalya;
Gilyok, Marina;
Divashuk, Mikhail G.;
Karlov, Gennady I.;
Soloviev, Alexander

Publication type:

Article

Genome-Wide Identification and Development of LTR Retrotransposon-Based Molecular Markers for the Melilotus Genus.

Published in:

Plants (2223-7747), 2021, v. 10, n. 5, p. 890, doi. 10.3390/plants10050890

By:

Ouyang, Zifeng;
Wang, Yimeng;
Ma, Tiantian;
Kanzana, Gisele;
Wu, Fan;
Zhang, Jiyu;
Shim, Rosalyn Angeles

Publication type:

Article

Formation of a Functional Maize Centromere after Loss of Centromeric Sequences and Gain of Ectopic Sequences.

Published in:

Plant Cell, 2013, v. 25, n. 6, p. 1979, doi. 10.1105/tpc.113.110015

By:

Zhang, Bing;
Lv, Zhenling;
Pang, Junling;
Liu, Yalin;
Guo, Xiang;
Fu, Shulan;
Li, Jun;
Dong, Qianhua;
Wu, Hua-Jun;
Gao, Zhi;
Wang, Xiu-Jie;
Han, Fangpu

Publication type:

Article

Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges.

Published in:

Plant Cell, 2012, v. 24, n. 3, p. 1242, doi. 10.1105/tpc.111.095232

By:

Butelli, Eugenio;
Licciardello, Concetta;
Zhang, Yang;
Liu, Jianjun;
Mackay, Steve;
Bailey, Paul;
Reforgiato-Recupero, Giuseppe;
Martin, Cathie

Publication type:

Article

Targeted Identification of Short Interspersed Nuclear Element Families Shows Their Widespread Existence and Extreme Heterogeneity in Plant Genomes.

Published in:

Plant Cell, 2011, v. 23, n. 9, p. 3117, doi. 10.1105/tpc.111.088682

By:

Wenke, Torsten;
Döbel, Thomas;
Sörensen, Thomas Rosleff;
Junghans, Holger;
Weisshaar, Bernd;
Schmidt, Thomas

Publication type:

Article

Bifurcation and Enhancement of Autonomous-Nonautonomous Retrotransposon Partnership through LTR Swapping in Soybean.

Published in:

Plant Cell, 2010, v. 22, n. 1, p. 48, doi. 10.1105/tpc.109.068775

By:

Du, Jianchang;
Tian, Zhixi;
Bowen, Nathan J.;
Schmutz, Jeremy;
Shoemaker, Randy C.;
Ma, Jianxin

Publication type:

Article

A New Exon Derived from a Mammalian Apparent LTR Retrotransposon of the SUPT16H Gene.

Published in:

International Journal of Genomics, 2013, p. 1, doi. 10.1155/2013/387594

By:

Min-In Bae;
Yun-Ji Kim;
Ja-Rang Lee;
Yi-Deun Jung;
Heui-Soo Kim

Publication type:

Article

Are our memories formed by an ancient virus?

Published in:

Biologist, 2018, v. 65, n. 3, p. 14

By:

Pastuzyn, Elissa

Publication type:

Article

GTSF1 gene may serve as a novel potential diagnostic biomarker for liver cancer.

Published in:

Oncology Letters, 2018, v. 15, n. 3, p. 3133, doi. 10.3892/ol.2017.7695

By:

Gao, De-Yong;
Ling, Yun;
Lou, Xiao-Li;
Wang, Ying-Ying;
Liu, Liang-Ming

Publication type:

Article

Which factors contribute most to genome size variation within angiosperms?

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 6, p. 2660, doi. 10.1002/ece3.7222

By:

Wang, Dandan;
Zheng, Zeyu;
Li, Ying;
Hu, Hongyin;
Wang, Zhenyue;
Du, Xin;
Zhang, Shangzhe;
Zhu, Mingjia;
Dong, Longwei;
Ren, Guangpeng;
Yang, Yongzhi

Publication type:

Article

Screening of candidate genes and fine mapping of drought tolerance quantitative trait loci on chromosome 4 in rice ( Oryza sativa L.) under drought stress.

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 21, p. 5007, doi. 10.1002/ece3.1786

By:

Nie, Yuan‐Yuan;
Zhang, Lin;
Wu, Yun‐Hua;
Liu, Hao‐Jie;
Mao, Wei‐Wei;
Du, Juan;
Xiu, Hai‐Lin;
Wu, Xiao‐Yu;
Li, Xia;
Yan, Yu‐Wei;
Liu, Guo‐Lan;
Liu, Hong‐Yan;
Hu, Song‐Ping

Publication type:

Article

Stress Induced Activation of LTR Retrotransposons in the Drosophila melanogaster Genome.

Published in:

Life (2075-1729), 2023, v. 13, n. 12, p. 2272, doi. 10.3390/life13122272

By:

Milyaeva, Polina A.;
Kukushkina, Inna V.;
Kim, Alexander I.;
Nefedova, Lidia N.

Publication type:

Article

Human Retrotransposons and Effective Computational Detection Methods for Next-Generation Sequencing Data.

Published in:

Life (2075-1729), 2022, v. 12, n. 10, p. 1583, doi. 10.3390/life12101583

By:

Lee, Haeun;
Min, Jun Won;
Mun, Seyoung;
Han, Kyudong

Publication type:

Article

Transposable Elements in Bats Show Differential Accumulation Patterns Determined by Class and Functionality.

Published in:

Life (2075-1729), 2022, v. 12, n. 8, p. 1190, doi. 10.3390/life12081190

By:

Paulat, Nicole S.;
McGuire, Erin;
Subramanian, Krishnamurthy;
Osmanski, Austin B.;
Moreno-Santillán, Diana D.;
Ray, David A.;
Xing, Jinchuan

Publication type:

Article

Genome Size Variation and Evolution Driven by Transposable Elements in the Genus Oryza.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.921937

By:

Shuang-feng Dai;
Xun-ge Zhu;
Ge-rang Hutang;
Jia-yue Li;
Jia-qi Tian;
Xian-hui Jiang;
Dan Zhang;
Li-zhi Gao

Publication type:

Article

DNA Methylome and LncRNAome Analysis Provide Insights Into Mechanisms of Genome-Dosage Effects in Autotetraploid Cassava.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.915056

By:

Liang Xiao;
Liuying Lu;
Wendan Zeng;
Xiaohong Shang;
Sheng Cao;
Huabing Yan

Publication type:

Article

Evolutionary Dynamics of the Repeatome Explains Contrasting Differences in Genome Sizes and Hybrid and Polyploid Origins of Grass Loliinae Lineages.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.901733

By:

Moreno-Aguilar, María Fernanda;
Inda, Luis A.;
Sánchez-Rodríguez, Aminael;
Arnelas, Itziar;
Catalán, Pilar

Publication type:

Article

Weak Effect of Gypsy Retrotransposon Bursts on Sonneratia alba Salt Stress Gene Expression.

Published in:

Frontiers in Plant Science, 2022, v. 12, p. 1, doi. 10.3389/fpls.2021.830079

By:

Wang, Yushuai;
Dai, Aimei;
Tang, Tian

Publication type:

Article

Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium , Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.766389

By:

Liu, Hui;
Yan, Xue-Mei;
Wang, Xin-rui;
Zhang, Dong-Xu;
Zhou, Qingyuan;
Shi, Tian-Le;
Jia, Kai-Hua;
Tian, Xue-Chan;
Zhou, Shan-Shan;
Zhang, Ren-Gang;
Yun, Quan-Zheng;
Wang, Qing;
Xiang, Qiuhong;
Mannapperuma, Chanaka;
Van Zalen, Elena;
Street, Nathaniel R.;
Porth, Ilga;
El-Kassaby, Yousry A.;
Zhao, Wei;
Wang, Xiao-Ru

Publication type:

Article

Complex Networks of Prion-Like Proteins Reveal Cross Talk Between Stress and Memory Pathways in Plants.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.707286

By:

Garai, Sampurna;
Citu;
Singla-Pareek, Sneh L.;
Sopory, Sudhir K.;
Kaur, Charanpreet;
Yadav, Gitanjali

Publication type:

Article

Full-Length Genome of a Ogataea polymorpha Strain CBS4732 ura3 Δ Reveals Large Duplicated Segments in Subtelomeric Regions.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.855666

By:

Chang, Jia;
Bei, Jinlong;
Shao, Qi;
Wang, Hemu;
Fan, Huan;
Yau, Tung On;
Bu, Wenjun;
Ruan, Jishou;
Wei, Dongsheng;
Gao, Shan

Publication type:

Article

GENETIC STRUCTURE OF CULTIVATED FLAX (Linum usitatissimum L.) BASED ON RETROTRANSPOSON-BASED MARKERS.

Published in:

Genetika (0534-0012), 2015, v. 47, n. 3, p. 1111, doi. 10.2298/GENSR1503111H

By:

HABIBOLLAHI, Hadi;
NOORMOHAMMADI, Zahra;
SHEIDAI, Masoud;
FARAHANI, Farah

Publication type:

Article

IRAP AND REMAP-BASED ASSESSMENT OF GENETIC DIVERSITY IN CHICKPEA COLLECTION FROM IRAN.

Published in:

Genetika (0534-0012), 2014, v. 46, n. 3, p. 731, doi. 10.2298/GENSR1403731A

By:

AGHAALI, Zahra;
GHADMIZADEH, Morteza;
ABDOLLAHI MANDOULAKANI, Babak;
BERNOUSI, Iraj

Publication type:

Article