Works matching DE "REGULONS"

Results: 92

Involvement of AtoSC two-component system in Escherichia coli flagellar regulon.

Published in:

Amino Acids, 2012, v. 43, n. 2, p. 833, doi. 10.1007/s00726-011-1140-7

By:

Theodorou, Marina;
Theodorou, Evaggelos;
Kyriakidis, Dimitrios

Publication type:

Article

MicroRNA regulons in tumor microenvironment.

Published in:

Oncogene, 2015, v. 34, n. 24, p. 3085, doi. 10.1038/onc.2014.254

By:

Suzuki, H I;
Katsura, A;
Matsuyama, H;
Miyazono, K

Publication type:

Article

Symmetry in the Language of Gene Expression: A Survey of Gene Promoter Networks in Multiple Bacterial Species and Non-σ Regulons.

Published in:

Symmetry (20738994), 2011, v. 3, n. 4, p. 750, doi. 10.3390/sym3040750

By:

Aldrich, Preston R.;
Horsley, Robert K.;
Turcic, Stefan M.

Publication type:

Article

RNA regulons and the RNA-protein interaction network.

Published in:

Biomolecular Concepts, 2012, v. 3, n. 5, p. 403, doi. 10.1515/bmc-2012-0016

By:

Imig, Jochen;
Kanitz, Alexander;
Gerber, AndréP.

Publication type:

Article

The Rsm regulon of plant growth-promoting P seudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis.

Published in:

Microbial Biotechnology, 2015, v. 8, n. 2, p. 296, doi. 10.1111/1751-7915.12190

By:

Song, Chunxu;
Voort, Menno;
Mortel, Judith;
Hassan, Karl A.;
Elbourne, Liam D. H.;
Paulsen, Ian T.;
Loper, Joyce E.;
Raaijmakers, Jos M.

Publication type:

Article

Adaptation of Mycobacterium tuberculosis to Impaired Host Immunity in HIV-Infected Patients.

Published in:

2016

By:

Walter, Nicholas D.;
de Jong, Bouke C.;
Garcia, Benjamin J.;
Dolganov, Gregory M.;
Worodria, William;
Byanyima, Patrick;
Musisi, Emmanuel;
Huang, Laurence;
Chan, Edward D.;
Van, Tran T.;
Antonio, Martin;
Ayorinde, Abigail;
Kato-Maeda, Midori;
Nahid, Payam;
Leung, Ann M.;
Yen, Andrew;
Fingerlin, Tasha E.;
Kechris, Katerina;
Strong, Michael;
Voskuil, Martin I.

Publication type:

journal article

Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation.

Published in:

Microbial Cell Factories, 2013, v. 12, n. 1, p. 1, doi. 10.1186/1475-2859-12-112

By:

de Veen, Hermien Van Bokhorst-van;
Bongers, Roger S.;
Wels, Michiel;
Bron, Peter A.;
Kleerebezem, Michiel

Publication type:

Article

A system-level model for the microbial regulatory genome.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 7, p. n/a, doi. 10.15252/msb.20145160

By:

Brooks, Aaron N;
Reiss, David J;
Allard, Antoine;
Wu, Wei‐Ju;
Salvanha, Diego M;
Plaisier, Christopher L;
Chandrasekaran, Sriram;
Pan, Min;
Kaur, Amardeep;
Baliga, Nitin S

Publication type:

Article

Nitrofurantoin, phenazopyridine, and the superoxide-response regulon soxRS of Escherichia coli.

Published in:

Journal of Infection & Chemotherapy (Springer Science & Business Media B.V.), 2013, v. 19, n. 6, p. 1135, doi. 10.1007/s10156-013-0635-4

By:

Amábile-Cuevas, Carlos F.;
Arredondo-García, José Luis

Publication type:

Article

Comparative transcriptome analysis of pepper ( Capsicum annuum) revealed common regulons in multiple stress conditions and hormone treatments.

Published in:

Plant Cell Reports, 2013, v. 32, n. 9, p. 1351, doi. 10.1007/s00299-013-1447-9

By:

Lee, Sanghyeob;
Choi, Doil

Publication type:

Article

MyomirDB: A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-65319-z

By:

Gupta, Apoorv;
Srivastava, Sukanya;
Suryakumar, Geetha;
Kumar, Bhuvnesh;
Khurana, Pankaj

Publication type:

Article

Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01832-6

By:

Ficko-Blean, Elizabeth;
Préchoux, Aurélie;
Thomas, François;
Larocque, Robert;
Génicot, Sabine;
Jam, Murielle;
Correc, Gaëlle;
Matard-Mann, Maria;
Jeudy, Alexandra;
Barbeyron, Tristan;
Czjzek, Mirjam;
Michel, Gurvan;
Rochat, Tatiana;
Pérez-Pascual, David;
Duchaud, Eric;
Yongtao Zhu;
McBride, Mark J.;
Stam, Mark;
Calteau, Alexandra;
Viart, Benjamin

Publication type:

Article

Quantitative modeling and analytic assessment of the transcription dynamics of the XlnR regulon in Aspergillus niger.

Published in:

BMC Systems Biology, 2016, p. 1, doi. 10.1186/s12918-016-0257-4

By:

Omony, Jimmy;
Mach-Aigner, Astrid R.;
van Straten, Gerrit;
van Boxtel, Anton J. B.

Publication type:

Article

Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2162-4

By:

Kumka, Joseph E.;
Bauer, Carl E.

Publication type:

Article

RegPrecise 3.0 -- A resource for genome-scale exploration of transcriptional regulation in bacteria.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-745

By:

Novichkov, Pavel S.;
Kazakov, Alexey E.;
Ravcheev, Dmitry A.;
Leyn, Semen A.;
Kovaleva, Galina Y.;
Sutormin, Roman A.;
Kazanov, Marat D.;
Riehl, William;
Arkin, Adam P.;
Dubchak, Inna;
Rodionov, Dmitry A.

Publication type:

Article

Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-722

By:

Barah, Pankaj;
Jayavelu, Naresh Doni;
Rasmussen, Simon;
Nielsen, Henrik Bjørn;
Mundy, John;
Bones, Atle M.

Publication type:

Article

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-597

By:

Sun, Eric I.;
Leyn, Semen A.;
Kazanov, Marat D.;
Saier Jr., Milton H.;
Novichkov, Pavel S.;
Rodionov, Dmitry A.

Publication type:

Article

Global transcriptional response of Caulobacter crescentus to iron availability.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-549

By:

Da Silva Neto, José F.;
Lourenço, Rogério F.;
Marques, Marilis V.

Publication type:

Article

The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-849

By:

Venkataramanan, Keerthi P.;
Jones, Shawn W.;
McCormick, Kevin P.;
Kunjeti, Sridhara G.;
Ralston, Matthew T.;
Meyers, Blake C.;
Papoutsakis, Eleftherios T.

Publication type:

Article

Correction: Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation.

Published in:

2016

By:

De Majumdar, Shyamasree;
Yu, Jing;
Fookes, Maria;
McAteer, Sean P.;
Llobet, Enrique;
Spence, Sarah Finn Shaun;
Monaghan, Avril;
Kissenpfennig, Adrien;
Ingram, Rebecca J.;
Bengoechea, José;
Gally, David L.;
Fanning, Séamus;
Elborn, Joseph S.;
Schneiders, Thamarai

Publication type:

Correction Notice

Analysis and validation of the pho regulon in the tacrolimus-producer strain Streptomyces tsukubaensis: differences with the model organism Streptomyces coelicolor.

Published in:

Applied Microbiology & Biotechnology, 2018, v. 102, n. 16, p. 7029, doi. 10.1007/s00253-018-9140-0

By:

Martínez-Castro, Miriam;
Barreiro, Carlos;
Martín, Juan F.

Publication type:

Article

SOS gene induction and possible mutagenic effects of freeze-drying in Escherichia coli and Salmonella typhimurium.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 21, p. 9255, doi. 10.1007/s00253-016-7751-x

By:

Rosen, Rachel;
Buchinger, Sebastian;
Pfänder, Ramona;
Pedhazur, Rami;
Reifferscheid, Georg;
Belkin, Shimshon

Publication type:

Article

Regulons of global transcription factors in Corynebacterium glutamicum.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 1, p. 45, doi. 10.1007/s00253-015-7074-3

By:

Toyoda, Koichi;
Inui, Masayuki

Publication type:

Article

A microRNA regulon that mediates endothelial recruitment and metastasis by cancer cells.

Published in:

Nature, 2012, v. 481, n. 7380, p. 190, doi. 10.1038/nature10661

By:

Png, Kim J.;
Halberg, Nils;
Yoshida, Mitsukuni;
Tavazoie, Sohail F.

Publication type:

Article

Humoral Responses to Rv1733c, Rv0081, Rv1735c, and Rv1737c DosR Regulon-Encoded Proteins of in Individuals with Latent Tuberculosis Infection.

Published in:

2017

By:

Kimuda, Simon G.;
Nalwoga, Angela;
Levin, Jonathan;
Franken, Kees L. M. C.;
Ottenhoff, Tom H. M.;
Elliott, Alison M.;
Cose, Stephen;
Andia-Biraro, Irene

Publication type:

journal article

Characterization of DNA Binding Sites of RokB, a ROK-Family Regulator from Streptomyces coelicolor Reveals the RokB Regulon.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0153249

By:

Bekiesch, Paulina;
Forchhammer, Karl;
Apel, Alexander Kristian

Publication type:

Article

Evolutionary and Functional Relationships of the dha Regulon by Genomic Context Analysis.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150772

By:

Martins-Pinheiro, Marinalva;
Lima, Wanessa C.;
Asif, Huma;
Oller, Cláudio A.;
Menck, Carlos F. M.

Publication type:

Article

Role of AcsR in expression of the acetyl-CoA synthetase gene in Vibrio vulnificus.

Published in:

BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0418-4

By:

Min Jung Kim;
Juri Kim;
Hye-Yeon Lee;
Hyeon Jin Noh;
Kyu-Ho Lee;
Soon-Jung Park

Publication type:

Article

Identified members of the Streptomyces lividans AdpA regulon involved in differentiation and secondary metabolism.

Published in:

BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2180-14-81

By:

Guyet, Aurélie;
Benaroudj, Nadia;
Proux, Caroline;
Gominet, Myriam;
Coppée, Jean-Yves;
Mazodier, Philippe

Publication type:

Article

Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2138-x

By:

Modrák, Martin;
Vohradský, Jiří

Publication type:

Article

The SOS and RpoS Regulons Contribute to Bacterial Cell Robustness to Genotoxic Stress by Synergistically Regulating DNA Polymerase Pol II.

Published in:

Genetics, 2017, v. 206, n. 3, p. 1349, doi. 10.1534/genetics.116.199471

By:

Dapa, Tanja;
Fleurier, Sébastien;
Bredeche, Marie-Florence;
Matic, Ivan

Publication type:

Article

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01819

By:

Faria, José P.;
Davis, James J.;
Edirisinghe, Janaka N.;
Taylor, Ronald C.;
Weisenhorn, Pamela;
Olson, Robert D.;
Stevens, Rick L.;
Rocha, Miguel;
Rocha, Isabel;
Best, Aaron A.;
DeJongh, Matthew;
Tintle, Nathan L.;
Parrello, Bruce;
Overbeek, Ross;
Henry, Christopher S.

Publication type:

Article

Multi-layered inhibition of Streptomyces development: BldO is a dedicated repressor of whiB.

Published in:

Molecular Microbiology, 2017, v. 104, n. 5, p. 700, doi. 10.1111/mmi.13663

By:

Bush, Matthew J.;
Chandra, Govind;
Findlay, Kim C.;
Buttner, Mark J.

Publication type:

Article

S taphylococcus aureus competence genes: mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing.

Published in:

Molecular Microbiology, 2014, v. 94, n. 3, p. 557, doi. 10.1111/mmi.12767

By:

Fagerlund, Annette;
Granum, Per Einar;
Håvarstein, Leiv Sigve

Publication type:

Article

PTS phosphorylation of Mga modulates regulon expression and virulence in the group A streptococcus.

Published in:: Molecular Microbiology, 2014, v. 93, n. 4, p. 834, doi. 10.1111/mmi.12722
Publication type:: Article

A chemical potentiator of copper-accumulation used to investigate the iron-regulons of S accharomyces cerevisiae.

Published in:

Molecular Microbiology, 2014, v. 93, n. 2, p. 317, doi. 10.1111/mmi.12661

By:

Foster, Andrew W.;
Dainty, Samantha J.;
Patterson, Carl J.;
Pohl, Ehmke;
Blackburn, Hannah;
Wilson, Clare;
Hess, Corinna R.;
Rutherford, Julian C.;
Quaranta, Laura;
Corran, Andy;
Robinson, Nigel J.

Publication type:

Article

Regulation of the KstR2 regulon of Mycobacterium tuberculosis by a cholesterol catabolite.

Published in:

Molecular Microbiology, 2013, v. 89, n. 6, p. 1201, doi. 10.1111/mmi.12340

By:

Casabon, Israël;
Zhu, Song‐Hua;
Otani, Hiroshi;
Liu, Jie;
Mohn, William W.;
Eltis, Lindsay D.

Publication type:

Article

PTS phosphorylation of Mga modulates regulon expression and virulence in the group A streptococcus.

Published in:

Molecular Microbiology, 2013, v. 88, n. 6, p. 1176, doi. 10.1111/mmi.12250

By:

Hondorp, Elise R.;
Hou, Sherry C.;
Hause, Lara L.;
Gera, Kanika;
Lee, Ching‐En;
McIver, Kevin S.

Publication type:

Article

The phosphotransferase protein EIIANtr modulates the phosphate starvation response through interaction with histidine kinase PhoR in Escherichia coli.

Published in:

Molecular Microbiology, 2012, v. 86, n. 1, p. 96, doi. 10.1111/j.1365-2958.2012.08176.x

By:

Lüttmann, Denise;
Göpel, Yvonne;
Görke, Boris

Publication type:

Article

The coming of age of the LeuO regulator.

Published in:

Molecular Microbiology, 2012, v. 85, n. 6, p. 1026, doi. 10.1111/j.1365-2958.2012.08175.x

By:

Hernández-Lucas, Ismael;
Calva, Edmundo

Publication type:

Article

Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11406-3

By:

Clay, Nicole K.;
Barco, Brenden;
Kim, Yoseph

Publication type:

Article

The Pho regulon influences biofilm formation and type three secretion in Pseudomonas aeruginosa.

Published in:

Environmental Microbiology Reports, 2009, v. 1, n. 6, p. 488, doi. 10.1111/j.1758-2229.2009.00049.x

By:

Haddad, Ahmed;
Jensen, Vanessa;
Becker, Tanja;
Häussler, Susanne

Publication type:

Article

Evidence of cyclical light/dark-regulated expression of freezing tolerance in young winter wheat plants.

Published in:

PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0198042

By:

Skinner, Daniel Z.;
Bellinger, Brian;
Hiscox, William;
Helms, Gregory L.

Publication type:

Article

Natural variation of a sensor kinase controlling a conserved stress response pathway in Escherichia coli.

Published in:

PLoS Genetics, 2017, v. 13, n. 11, p. 1, doi. 10.1371/journal.pgen.1007101

By:

Roggiani, Manuela;
Yadavalli, Srujana S.;
Goulian, Mark

Publication type:

Article

Specificity of the Metalloregulator CueR for Monovalent Metal Ions: Possible Functional Role of a Coordinated Thiol?

Published in:

Angewandte Chemie, 2015, v. 127, n. 52, p. 15982, doi. 10.1002/ange.201508555

By:

Szunyogh, Dániel;
Szokolai, Hajnalka;
Thulstrup, Peter W.;
Larsen, Flemming H.;
Gyurcsik, Béla;
Christensen, Niels Johan;
Stachura, Monika;
Hemmingsen, Lars;
Jancsó, Attila

Publication type:

Article

Induction of the Spx regulon by cell wall stress reveals novel regulatory mechanisms in <italic>Bacillus subtilis</italic>.

Published in:

Molecular Microbiology, 2018, v. 107, n. 5, p. 659, doi. 10.1111/mmi.13906

By:

Rojas‐Tapias, Daniel F.;
Helmann, John D.

Publication type:

Article

In planta fitness-cost of the Atu4232-regulon encoding for a selective GABA-binding sensor in Agrobacterium.

Published in:

Communicative & Integrative Biology, 2013, v. 6, n. 3, p. e23692-1, doi. 10.4161/cib.23692

By:

Planamente, Sara;
Moréra, Solange;
Faure, Denis

Publication type:

Article

Correction: Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011.

Published in:

2017

By:

Sobrero, Patricio;
Schlüter, Jan-Philip;
Lanner, Ulrike;
Schlosser, Andreas;
Becker, Anke;
Valverde, Claudio

Publication type:

Correction Notice

The Pho regulon: a huge regulatory network in bacteria.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00402

By:

Santos-Beneit, Fernando

Publication type:

Article

Comparative genomics and evolution of regulons of the LacI-family transcription factors.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00294

By:

Ravcheev, Dmitry A.;
Khoroshkin, Matvei S.;
Laikova, Olga N.;
Tsoy, Olga V.;
Sernova, Natalia V.;
Petrova, Svetlana A.;
Rakhmaninova, Aleksandra B.;
Novichkov, Pavel S.;
Gelfand, Mikhail S.;
Rodionov, Dmitry A.

Publication type:

Article