Works matching DE "PYROCOCCUS horikoshii"

Results: 37

Identification of a novel amino acid racemase from a hyperthermophilic archaeon Pyrococcus horikoshii OT-3 induced by d-amino acids.

Published in:

Amino Acids, 2015, v. 47, n. 8, p. 1579, doi. 10.1007/s00726-015-2001-6

By:

Kawakami, Ryushi;
Ohmori, Taketo;
Sakuraba, Haruhiko;
Ohshima, Toshihisa

Publication type:

Article

Genetic incorporation of d-lysine into diketoreductase in Escherichia coli cells.

Published in:

Amino Acids, 2012, v. 43, n. 6, p. 2553, doi. 10.1007/s00726-012-1311-1

By:

Liu, Zhizhi;
Yang, Xin;
Yi, Denghuan;
Wang, Shuzhen;
Chen, Yijun

Publication type:

Article

Effect of enzymatic high temperature prehydrolysis on the subsequent cellulose hydrolysis of steam-pretreated spruce in high solids concentration.

Published in:

Journal of Chemical Technology & Biotechnology, 2016, v. 91, n. 6, p. 1844, doi. 10.1002/jctb.4777

By:

Hämäläinen, Joonas;
Granström, Tom;
Mollerup, Filip;
Wang, Yawei;
Xiong, Hairong;
Turunen, Ossi

Publication type:

Article

Synthetic metabolic engineering-a novel, simple technology for designing a chimeric metabolic pathway.

Published in:

Microbial Cell Factories, 2012, v. 11, n. 1, p. 120, doi. 10.1186/1475-2859-11-120

By:

Xiaoting Ye;
Honda, Kohsuke;
Sakai, Takaaki;
Okano, Kenji;
Omasa, Takeshi;
Hirota, Ryuichi;
Kuroda, Akio;
Ohtake, Hisao

Publication type:

Article

Conformational ensemble of the sodium-coupled aspartate transporter.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 2, p. 215, doi. 10.1038/nsmb.2494

By:

Georgieva, Elka R;
Borbat, Peter P;
Ginter, Christopher;
Freed, Jack H;
Boudker, Olga

Publication type:

Article

A novel carbohydrate-binding surface layer protein from the hyperthermophilic archaeon Pyrococcus horikoshii.

Published in:

Bioscience, Biotechnology & Biochemistry, 2018, v. 82, n. 8, p. 1327, doi. 10.1080/09168451.2018.1460571

By:

Goda, Shuichiro;
Koga, Tomoyuki;
Yamashita, Kenichiro;
Kuriura, Ryo;
Ueda, Toshifumi

Publication type:

Article

On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2015, v. 79, n. 6, p. 952, doi. 10.1080/09168451.2014.1003130

By:

Kotaro Suematsu;
Toshifumi Ueda;
Takashi Nakashima;
Yoshimitsu Kakuta;
Makoto Kimura

Publication type:

Article

Functional and structural characteristics of methylmalonyl-CoA mutase from Pyrococcus horikoshii.

Published in:

Bioscience, Biotechnology & Biochemistry, 2015, v. 79, n. 5, p. 710, doi. 10.1080/09168451.2014.993353

By:

Yukinori Yabuta;
Yukiko Kamei;
Tomohiro Bito;
Jiro Arima;
Kazunari Yoneda;
Haruhiko Sakuraba;
Toshihisa Ohshima;
Yoshihisa Nakano;
Fumio Watanabe

Publication type:

Article

Overproduction of Hyperthermostable β-l,4-Endoglucanase from the Archaeon Pyrococcus horikoshii by Tobacco Chloroplast Engineering.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 10, p. 2140, doi. 10.1271/bbb.130413

By:

Yoichi NAKAHIRA;
Kazuhiko ISHIKAWA;
Kunisuke TANAKA;
Yuzuru TOZAWA;
Takashi SHIINA

Publication type:

Article

A Distinct Binding Mode of Archaeal Ribonuclease P Proteins to RNA.

Published in:

Bioscience, Biotechnology & Biochemistry, 2012, v. 76, n. 12, p. 2335, doi. 10.1271/bbb.120546

By:

ISHIHARA, Masato;
NISHIMOTO, Etsuko;
YAMASHITA, Shoji;
KAKUTA, Yoshimitsu;
KIMURA, Makoto

Publication type:

Article

Thermodynamic Analysis of a Multifunctional RNA-Binding Protein, P/*oRpp38, in the Hyperthermophilic Archaeon Pyrococcus horikoshii OT3.

Published in:

Bioscience, Biotechnology & Biochemistry, 2012, v. 76, n. 6, p. 1252, doi. 10.1271/bbb.120272

By:

Oshima, Kosuke;
Nakashima, Takashi;
Kakuta, Yoshimitsu;
Tsumoto, Kouhei;
Kimura, Makoto

Publication type:

Article

Theoretical Study on the Allosteric Regulation of an Oligomeric Protease from Pyrococcus horikoshii by Cl<sup>-</sup> Ion.

Published in:

Molecules, 2014, v. 19, n. 2, p. 1828, doi. 10.3390/molecules19021828

By:

Dongling Zhan;
Jiao Sun;
Yan Feng;
Weiwei Han

Publication type:

Article

An alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91090-w

By:

Williams, Jennie E.;
Jaramillo, Mario V.;
Li, Zhong;
Zhao, Jing;
Wang, Chunyu;
Li, Hongmin;
Mills, Kenneth V.

Publication type:

Article

Refinement of the Central Steps of Substrate Transport by the Aspartate Transporter GltPh: Elucidating the Role of the Na2 Sodium Binding Site.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004551

By:

Venkatesan, SanthoshKannan;
Saha, Kusumika;
Sohail, Azmat;
Sandtner, Walter;
Freissmuth, Michael;
Ecker, Gerhard F.;
Sitte, Harald H.;
Stockner, Thomas

Publication type:

Article

Serial intermediates with a 1 nt 3′-flap and 5′ variable-length flaps are formed by cooperative functioning of Pyrococcus horikoshii FEN-1 with either B or D DNA polymerases.

Published in:

Extremophiles, 2014, v. 18, n. 2, p. 415, doi. 10.1007/s00792-014-0627-z

By:

Matsui, Eriko;
Urushibata, Yuji;
Abe, Junko;
Matsui, Ikuo

Publication type:

Article

The role of disulfide bond in hyperthermophilic endocellulase.

Published in:

Extremophiles, 2013, v. 17, n. 4, p. 593, doi. 10.1007/s00792-013-0542-8

By:

Kim, Han-Woo;
Ishikawa, Kazuhiko

Publication type:

Article

A broader active site in Pyrococcus horikoshii CoA disulfide reductase accommodates larger substrates and reveals evidence of subunit asymmetry.

Published in:

FEBS Open Bio, 2018, v. 8, n. 7, p. 1083, doi. 10.1002/2211-5463.12439

By:

Sea, Kevin;
Lee, Jerry;
To, Daniel;
Chen, Berniece;
Sazinsky, Matthew H.;
Crane, III, Edward J.

Publication type:

Article

Crystal structure of the stomatin operon partner protein from Pyrococcus horikoshii indicates the formation of a multimeric assembly.

Published in:

FEBS Open Bio, 2014, v. 4, p. 804, doi. 10.1016/j.fob.2014.09.002

By:

Yokoyama, Hideshi;
Matsui, Ikuo

Publication type:

Article

Crystal structure of the stomatin operon partner protein from Pyrococcus horikoshii indicates the formation of a multimeric assembly.

Published in:

FEBS Open Bio, 2014, v. 4, n. 1, p. 804, doi. 10.1016/j.fob.2014.09.002

By:

Yokoyama, Hideshi;
Matsui, Ikuo

Publication type:

Article

A method of expression for an oxygen-tolerant group III alcohol dehydrogenase from Pyrococcus horikoshii OT3.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2017, v. 22, n. 4, p. 527, doi. 10.1007/s00775-017-1439-2

By:

Sugimoto, Chikanobu;
Takeda, Kouta;
Kariya, Yumi;
Matsumura, Hirotoshi;
Yohda, Masafumi;
Ohno, Hiroyuki;
Nakamura, Nobuhumi

Publication type:

Article

The TET2 and TET3 aminopeptidases from P yrococcus horikoshii form a hetero-subunit peptidasome with enhanced peptide destruction properties.

Published in:

Molecular Microbiology, 2014, v. 94, n. 4, p. 803, doi. 10.1111/mmi.12775

By:

Appolaire, Alexandre;
Durá, M. Asunción;
Ferruit, Mylène;
Andrieu, Jean‐Pierre;
Godfroy, Anne;
Gribaldo, Simonetta;
Franzetti, Bruno

Publication type:

Article

Transport domain unlocking sets the uptake rate of an aspartate transporter.

Published in:

Nature, 2015, v. 518, n. 7537, p. 68, doi. 10.1038/nature14158

By:

Akyuz, Nurunisa;
Georgieva, Elka R.;
Zhou, Zhou;
Stolzenberg, Sebastian;
Cuendet, Michel A.;
Khelashvili, George;
Altman, Roger B.;
Terry, Daniel S.;
Freed, Jack H.;
Weinstein, Harel;
Boudker, Olga;
Blanchard, Scott C.

Publication type:

Article

A Novel PLP-Dependent Alanine/Serine Racemase From the Hyperthermophilic Archaeon <italic>Pyrococcus horikoshii</italic> OT-3.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01481

By:

Kawakami, Ryushi;
Ohshida, Tatsuya;
Sakuraba, Haruhiko;
Ohshima, Toshihisa

Publication type:

Article

Crystallization and Preliminary X-Ray Analysis of a DNA Primase from Hyperthermophilic Archaeon Pyrococcus horikoshii1.

Published in:

Journal of Biochemistry, 2001, v. 130, n. 6, p. 727, doi. 10.1093/oxfordjournals.jbchem.a003041

By:

Ito, Nobutoshi;
Nureki, Osamu;
Shirouzu, Mikako;
Yokoyama, Shigeyuki;
Hanaoka, Fumio

Publication type:

Article

The Structure of the Archaebacterial Ribosomal Protein S7 and Its Possible Interaction with 16S rRNA1.

Published in:

Journal of Biochemistry, 2001, v. 130, n. 5, p. 695, doi. 10.1093/oxfordjournals.jbchem.a003036

By:

Hosaka, Harumi;
Yao, Min;
Kimura, Makoto;
Tanaka, Isao

Publication type:

Article

Temperature Dependence of the Enzyme-Substrate Recognition Mechanism1.

Published in:

Journal of Biochemistry, 2001, v. 129, n. 1, p. 173, doi. 10.1093/oxfordjournals.jbchem.a002829

By:

Ura, Hideaki;
Harata, Kazuaki;
Matsui, Ikuo;
Kuramitsu, Seiki

Publication type:

Article

Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea.

Published in:

Journal of Biochemistry, 2017, v. 162, n. 6, p. 415, doi. 10.1093/jb/mvx045

By:

Tsutomu Nakamura;
Maki Oshima;
Megumi Yasuda;
Akiko Shimamura;
Junji Morita;
Koichi Uegaki

Publication type:

Article

Functional implication of archaeal homologues of human RNase P protein pair Pop5 and Rpp30.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 1, p. 31, doi. 10.1093/jb/mvv067

By:

Masato Hamasaki;
Kohsuke Hazeyama;
Fumihiko Iwasaki;
Toshifumi Ueda;
Takashi Nakashima;
Yoshimitsu Kakuta;
Makoto Kimura

Publication type:

Article

Characterization of the peripheral structures of archaeal RNase P RNA from Pyrococcus horikoshii OT3.

Published in:

Journal of Biochemistry, 2014, v. 155, n. 1, p. 25, doi. 10.1093/jb/mvt092

By:

Ueda, Toshifumi;
Yamaguchi, Hiroki;
Miyanoshita, Mitsuru;
Nakashima, Takashi;
Kakuta, Yoshimitsu;
Kimura, Makoto

Publication type:

Article

Characterization of the PH1704 Protease from Pyrococcus horikoshii OT3 and the Critical Functions of Tyr120.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0103902

By:

Zhan, Dongling;
Bai, Aixi;
Yu, Lei;
Han, Weiwei;
Feng, Yan

Publication type:

Article

Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K‐turn motif.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2018, v. 74, n. 1, p. 57, doi. 10.1107/S2053230X17018039

By:

Oshima, Kosuke;
Gao, Xuzhu;
Hayashi, Seiichiro;
Ueda, Toshifumi;
Nakashima, Takashi;
Kimura, Makoto

Publication type:

Article

Crystal structure of SAM-dependent methyltransferase from Pyrococcus horikoshii.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2017, v. 73, n. 12, p. 706, doi. 10.1107/S2053230X17016648

By:

Pampa, K. J.;
Madan Kumar, S.;
Hema, M. K.;
Kumara, Karthik;
Naveen, S.;
Kunishima, Naoki;
Lokanath, N. K.

Publication type:

Article

Expression, high-pressure refolding, purification, crystallization and preliminary X-ray analysis of a novel single-strand-specific 3′-5′ exonuclease PhoExo I from Pyrococcus horikoshii OT3.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2014, v. 70, n. 8, p. 1076, doi. 10.1107/S2053230X14012734

By:

Miyazono, Ken-ichi;
Tsutsumi, Kanae;
Ishino, Yoshizumi;
Tanokura, Masaru

Publication type:

Article

The structures of the CutA1 proteins from Thermus thermophilus and Pyrococcus horikoshii: characterization of metal-binding sites and metal-induced assembly.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2014, v. 70, n. 4, p. 404, doi. 10.1107/S2053230X14003422

By:

Bagautdinov, Bagautdin

Publication type:

Article

Improvement of gamma-amino butyric acid production by an overexpression of glutamate decarboxylase from Pyrococcus horikoshii in Escherichia coli.

Published in:

Biotechnology & Bioprocess Engineering, 2014, v. 19, n. 2, p. 327, doi. 10.1007/s12257-013-0713-6

By:

Vo, Tam;
Pham, Van;
Ko, Ji-seun;
Lee, Seung;
Park, Si;
Hong, Soon

Publication type:

Article

Structural and biochemical analysis of a thermostable membrane-bound stomatin-specific protease.

Published in:

Journal of Synchrotron Radiation, 2013, v. 20, n. 6, p. 933, doi. 10.1107/S0909049513021328

By:

Yokoyama, Hideshi;
Kobayashi, Daisuke;
Takizawa, Naoto;
Fujii, Satoshi;
Matsui, Ikuo

Publication type:

Article

Optimized Expression of a Hyperthermostable Endoglucanase from Pyrococcus horikoshii in Arabidopsis thaliana.

Published in:

BioResources, 2019, v. 14, n. 2, p. 2812, doi. 10.15376/biores.14.2.2812-2826

By:

Xia Li;
Xiaoyan Geng;
Lu Gao;
Yanfang Wu;
Yongli Wang;
Alei Geng;
Jianzhong Sun;
Jianxiong Jiang

Publication type:

Article