Works matching DE "PSEUDOURIDINE"

Results: 150

Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 7, p. 740, doi. 10.1038/nsmb.1624

By:

Bo Liang;
Jing Zhou;
Kahen, Elliot;
Terns, Rebecca M.;
Terns, Michael P.;
Hong Li

Publication type:

Article

Increased Photostability of the Integral mRNA Vaccine Component N<sub>1</sub>‐Methylpseudouridine Compared to Uridine.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 6, p. 1, doi. 10.1002/chem.202103667

By:

Hoehn, Sean J.;
Krul, Sarah E.;
Skory, Brandon J.;
Crespo‐Hernández, Carlos E.

Publication type:

Article

Pseudouridylation-mediated gene expression modulation.

Published in:

Biochemical Journal, 2024, v. 481, n. 1, p. 1, doi. 10.1042/BCJ20230096

By:

Chen, Jonathan L.;
Leeder, W.-Matthias;
Morais, Pedro;
Hironori Adachi;
Yi-Tao Yu

Publication type:

Article

PPUS: a web server to predict PUS-specific pseudouridine sites.

Published in:

Bioinformatics, 2015, v. 31, n. 20, p. 3362, doi. 10.1093/bioinformatics/btv366

By:

Yan-Hui Li;
Gaigai Zhang;
Qinghua Cui

Publication type:

Article

RNAsnoop: efficient target prediction for H/ACA snoRNAs.

Published in:

Bioinformatics, 2010, v. 26, n. 5, p. 610, doi. 10.1093/bioinformatics/btp680

By:

Tafer, Hakim;
Kehr, Stephanie;
Hertel, Jana;
Hofacker, Ivo L.;
Stadler, Peter F.

Publication type:

Article

Multiomics and machine learning-based analysis of pancancer pseudouridine modifications.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01093-y

By:

Zhang, Jiheng;
Xu, Lei;
Yan, Xiuwei;
Hu, Jiahe;
Gao, Xin;
Zhao, Hongtao;
Geng, Mo;
Wang, Nan;
Hu, Shaoshan

Publication type:

Article

Multi-omics machine learning to study host-microbiome interactions in early-onset colorectal cancer.

Published in:

NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00647-1

By:

Jayakrishnan, Thejus T.;
Sangwan, Naseer;
Barot, Shimoli V.;
Farha, Nicole;
Mariam, Arshiya;
Xiang, Shao;
Aucejo, Federico;
Conces, Madison;
Nair, Kanika G.;
Krishnamurthi, Smitha S.;
Schmit, Stephanie L.;
Liska, David;
Rotroff, Daniel M.;
Khorana, Alok A.;
Kamath, Suneel D.

Publication type:

Article

RNA: Pseudouridylation of mRNAs - not so pseudo.

Published in:

2014

By:

Koch, Linda

Publication type:

journal article

Unraveling Metabolic Changes following Stroke: Insights from a Urinary Metabolomics Analysis.

Published in:

Metabolites (2218-1989), 2024, v. 14, n. 3, p. 145, doi. 10.3390/metabo14030145

By:

Petersson, Jamie N.;
Bykowski, Elani A.;
Ekstrand, Chelsea;
Dukelow, Sean P.;
Ho, Chester;
Debert, Chantel T.;
Montina, Tony;
Metz, Gerlinde A. S.

Publication type:

Article

Structure Characterization of Escherichia coli Pseudouridine Kinase PsuK.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.926099

By:

Li, Xiaojia;
Li, Kangjie;
Guo, Wenting;
Wen, Yan;
Meng, Chunyan;
Wu, Baixing

Publication type:

Article

The Emerging Role of RNA Modifications in the Regulation of Antiviral Innate Immunity.

Published in:

Frontiers in Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fmicb.2022.845625

By:

Tong, Jie;
Zhang, Wuchao;
Chen, Yuran;
Yuan, Qiaoling;
Qin, Ning-Ning;
Qu, Guosheng

Publication type:

Article

Transcriptome-wide analysis of pseudouridylation of mRNA and non-coding RNAs in Arabidopsis.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 19, p. 5089, doi. 10.1093/jxb/erz273

By:

Sun, Lirong;
Xu, Yuxing;
Bai, Shenglong;
Bai, Xue;
Zhu, Huijie;
Dong, Huan;
Wang, Wei;
Zhu, Xiaohong;
Hao, Fushun;
Song, Chun-Peng

Publication type:

Article

Plasma Metabolomics Reveals Metabolic Profiling For Diabetic Retinopathy and Disease Progression.

Published in:

Frontiers in Endocrinology, 2021, v. 12, p. 1, doi. 10.3389/fendo.2021.757088

By:

Sun, Yu;
Zou, Huiling;
Li, Xingjia;
Xu, Shuhang;
Liu, Chao

Publication type:

Article

New Insights into Dyskerin-CypA Interaction: Implications for X-Linked Dyskeratosis Congenita and Beyond.

Published in:

Genes, 2023, v. 14, n. 9, p. 1766, doi. 10.3390/genes14091766

By:

Belli, Valentina;
Maiello, Daniela;
Di Lorenzo, Concetta;
Furia, Maria;
Vicidomini, Rosario;
Turano, Mimmo

Publication type:

Article

Transfer RNA Modification Enzymes with a Thiouridine Synthetase, Methyltransferase and Pseudouridine Synthase (THUMP) Domain and the Nucleosides They Produce in tRNA.

Published in:

Genes, 2023, v. 14, n. 2, p. 382, doi. 10.3390/genes14020382

By:

Hori, Hiroyuki

Publication type:

Article

Epitranscriptomic Reprogramming Is Required to Prevent Stress and Damage from Acetaminophen.

Published in:

Genes, 2022, v. 13, n. 3, p. 421, doi. 10.3390/genes13030421

By:

Evke, Sara;
Lin, Qishan;
Melendez, Juan Andres;
Begley, Thomas John

Publication type:

Article

Eukaryotic Translation Elongation is Modulated by Single Natural Nucleotide Derivatives in the Coding Sequences of mRNAs.

Published in:

Genes, 2019, v. 10, n. 2, p. 84, doi. 10.3390/genes10020084

By:

Hoernes, Thomas Philipp;
Heimdörfer, David;
Köstner, Daniel;
Faserl, Klaus;
Nußbaumer, Felix;
Plangger, Raphael;
Kreutz, Christoph;
Lindner, Herbert;
Erlacher, Matthias David

Publication type:

Article

Nucleotide Modifications Decrease Innate Immune Response Induced by Synthetic Analogs of snRNAs and snoRNAs.

Published in:

Genes, 2018, v. 9, n. 11, p. 531, doi. 10.3390/genes9110531

By:

Stepanov, Grigory;
Zhuravlev, Evgenii;
Shender, Victoria;
Nushtaeva, Anna;
Balakhonova, Evgenia;
Mozhaeva, Elena;
Kasakin, Marat;
Koval, Vladimir;
Lomzov, Alexander;
Pavlyukov, Marat;
Malyants, Irina;
Zhorov, Mikhail;
Kabilova, Tatyana;
Chernolovskaya, Elena;
Govorun, Vadim;
Kuligina, Elena;
Semenov, Dmitry;
Richter, Vladimir

Publication type:

Article

RNA Pseudouridylation in Physiology and Medicine: For Better and for Worse.

Published in:

Genes, 2017, v. 8, n. 11, p. 301, doi. 10.3390/genes8110301

By:

Penzo, Marianna;
Guerrieri, Ania N.;
Zacchini, Federico;
Treré, Davide;
Montanaro, Lorenzo

Publication type:

Article

5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding.

Published in:

Genes, 2017, v. 8, n. 11, p. 295, doi. 10.3390/genes8110295

By:

Junhui Ge;
Karijolich, John;
Yingzhen Zhai;
Jianming Zheng;
Yi-Tao Yu

Publication type:

Article

Quantification of Pseudouridine Levels in Cellular RNA Pools with a Modified HPLC-UV Assay.

Published in:

Genes, 2017, v. 8, n. 9, p. 219, doi. 10.3390/genes8090219

By:

Jialin Xu;
Gu, Alice Y.;
Thumati, Naresh R.;
Wong, Judy M. Y.

Publication type:

Article

Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage.

Published in:

Rice (19398425), 2021, v. 14, n. 1, p. 1, doi. 10.1186/s12284-020-00433-0

By:

Nayyeripasand, Leila;
Garoosi, Ghasem Ali;
Ahmadikhah, Asadollah

Publication type:

Article

Discovery, properties, and biosynthesis of pseudouridimycin, an antibacterial nucleoside-analog inhibitor of bacterial RNA polymerase.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 3/4, p. 335, doi. 10.1007/s10295-018-2109-2

By:

Maffioli, Sonia I.;
Sosio, Margherita;
Ebright, Richard H.;
Donadio, Stefano

Publication type:

Article

An Efficient Protection-Free One-Pot Chemical Synthesis of Modified Nucleoside-5′-Triphosphates.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2016, v. 35, n. 7, p. 356, doi. 10.1080/15257770.2016.1163382

By:

Shanmugasundaram, Muthian;
Senthilvelan, Annamalai;
Xiao, Zejun;
Kore, Anilkumar R.

Publication type:

Article

Pseudouridine Synthase RsuA Confers a Survival Advantage to Bacteria under Streptomycin Stress.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 9, p. 1447, doi. 10.3390/antibiotics12091447

By:

Abedeera, Sudeshi M.;
Jayalath, Kumudie S.;
Xie, Jiale;
Rauff, Rushdhi M.;
Abeysirigunawardena, Sanjaya C.

Publication type:

Article

A prion accelerates proliferation at the expense of lifespan.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.60917

By:

Garcia, David M.;
Campbell, Edgar A.;
Jakobson, Christopher M.;
Tsuchiya, Mitsuhiro;
Shaw, Ethan A.;
DiNardo, Acadia L.;
Kaeberlein, Matt;
Jarosz, Daniel F.

Publication type:

Article

Pseudouridine synthase 1 promotes progression of hepatocellular carcinoma via mTOR and MYC signaling pathways.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1576651

By:

Chen, Li;
Tan, Yonghuang;
Li, Weinan;
Huang, Lunkai;
Li, Kang;
Feng, Zanjie;
Peng, Cijun;
Mei, Yong

Publication type:

Article

Human SHQ1 variants R335C and A426V lead to severe ribosome biogenesis defects when expressed in yeast.

Published in:

Frontiers in Genetics, 2023, p. 01, doi. 10.3389/fgene.2023.1240416

By:

Alidou-D'Anjou, Ismaël;
Patel, Aniket;
Sleiman, Sophie;
Dragon, François

Publication type:

Article

Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28776-w

By:

Leppek, Kathrin;
Byeon, Gun Woo;
Kladwang, Wipapat;
Wayment-Steele, Hannah K.;
Kerr, Craig H.;
Xu, Adele F.;
Kim, Do Soon;
Topkar, Ved V.;
Choe, Christian;
Rothschild, Daphna;
Tiu, Gerald C.;
Wellington-Oguri, Roger;
Fujii, Kotaro;
Sharma, Eesha;
Watkins, Andrew M.;
Nicol, John J.;
Romano, Jonathan;
Tunguz, Bojan;
Diaz, Fernando;
Cai, Hui

Publication type:

Article

Isolation and Properties of Escherichia coli 23S-RNA Pseudouridine 1911, 1915, 1917 Synthase (RluD).

Published in:

IUBMB Life, 2000, v. 50, n. 1, p. 33, doi. 10.1080/15216540050176566

By:

Wrzesinski, Jan;
Bakin, Andrei;
Ofengand, James;
Lane, Byron G.

Publication type:

Article

Pseudouridine in RNA: What, Where, How, and Why.

Published in:

IUBMB Life, 2000, v. 49, n. 5, p. 341, doi. 10.1080/152165400410182

By:

Charette, Michael;
Gray, Michael W.

Publication type:

Article

iPseU-Layer: Identifying RNA Pseudouridine Sites Using Layered Ensemble Model.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2020, v. 12, n. 2, p. 193, doi. 10.1007/s12539-020-00362-y

By:

Mu, Yashuang;
Zhang, Ruijun;
Wang, Lidong;
Liu, Xiaodong

Publication type:

Article

Structure-Function Relationship of Substituted Bromomethylcoumarins in Nucleoside Specificity of RNA Alkylation.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0067945

By:

Kellner, Stefanie;
Kollar, Laura Bettina;
Ochel, Antonia;
Ghate, Manjunath;
Helm, Mark

Publication type:

Article

Molecular modeling studies of pseudouridine isoxazolidinyl nucleoside analogues as potential inhibitors of the pseudouridine 5ʹ‐monophosphate glycosidase.

Published in:

Chemical Biology & Drug Design, 2018, v. 91, n. 2, p. 519, doi. 10.1111/cbdd.13113

By:

Pistarà, Venerando;
Amata, Emanuele;
Dichiara, Maria;
Damigella, Arcangelo;
Marrazzo, Agostino;
Prezzavento, Orazio;
Punzo, Francesco;
Rescifina, Antonio;
Floresta, Giuseppe

Publication type:

Article

iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6357-y

By:

Nguyen-Vo, Thanh-Hoang;
Nguyen, Quang H.;
Do, Trang T.T.;
Nguyen, Thien-Ngan;
Rahardja, Susanto;
Nguyen, Binh P.

Publication type:

Article

The role of m6A, m5C and Ψ RNA modifications in cancer: Novel therapeutic opportunities.

Published in:

2021

By:

Nombela, Paz;
Miguel-López, Borja;
Blanco, Sandra

Publication type:

Literature Review

The metabolomic profiling of total fat and fat distribution in a multi-cohort study of women and men.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38318-z

By:

Zheng, Rui;
Michaëlsson, Karl;
Fall, Tove;
Elmståhl, Sölve;
Lind, Lars

Publication type:

Article

Deciphering the pseudouridine nucleobase modification in human diseases: From molecular mechanisms to clinical perspectives.

Published in:

Clinical & Translational Medicine, 2025, v. 15, n. 1, p. 1, doi. 10.1002/ctm2.70190

By:

Jia, Shiheng;
Yu, Xue;
Deng, Na;
Zheng, Chen;
Ju, Mingguang;
Wang, Fanglin;
Zhang, Yixiao;
Gao, Ziming;
Li, Yanshu;
Zhou, Heng;
Li, Kai

Publication type:

Article

PUS7‐dependent pseudouridylation of ALKBH3 mRNA inhibits gastric cancer progression.

Published in:

Clinical & Translational Medicine, 2024, v. 14, n. 8, p. 1, doi. 10.1002/ctm2.1811

By:

Chang, Yongxia;
Jin, Hao;
Cui, Yun;
Yang, Feng;
Chen, Kanghua;
Kuang, Wenjun;
Huo, Chunxiao;
Xu, Zhangqi;
Li, Ya;
Lin, Aifu;
Yang, Bo;
Liu, Wei;
Xie, Shanshan;
Zhou, Tianhua

Publication type:

Article

Pseudouridylation of chloroplast ribosomal RNA contributes to low temperature acclimation in rice.

Published in:

New Phytologist, 2022, v. 236, n. 5, p. 1708, doi. 10.1111/nph.18479

By:

Wang, Zhen;
Sun, Jing;
Zu, Xiaofeng;
Gong, Jie;
Deng, Hongjing;
Hang, Runlai;
Zhang, Xiaofan;
Liu, Chunyan;
Deng, Xian;
Luo, Lilan;
Wei, Xiangjin;
Song, Xianwei;
Cao, Xiaofeng

Publication type:

Article

Deletion of the RluD pseudouridine synthase promotes SsrA peptide tagging of ribosomal protein S7.

Published in:

Molecular Microbiology, 2011, v. 79, n. 2, p. 331, doi. 10.1111/j.1365-2958.2010.07467.x

By:

Schaub, Ryan E.;
Hayes, Christopher S.

Publication type:

Article

A selective and atom-economic rearrangement of uridine by cascade biocatalysis for production of pseudouridine.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37942-7

By:

Pfeiffer, Martin;
Ribar, Andrej;
Nidetzky, Bernd

Publication type:

Article

Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencing.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35858-w

By:

Tavakoli, Sepideh;
Nabizadeh, Mohammad;
Makhamreh, Amr;
Gamper, Howard;
McCormick, Caroline A.;
Rezapour, Neda K.;
Hou, Ya-Ming;
Wanunu, Meni;
Rouhanifard, Sara H.

Publication type:

Article

Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28776-w

By:

Leppek, Kathrin;
Byeon, Gun Woo;
Kladwang, Wipapat;
Wayment-Steele, Hannah K.;
Kerr, Craig H.;
Xu, Adele F.;
Kim, Do Soon;
Topkar, Ved V.;
Choe, Christian;
Rothschild, Daphna;
Tiu, Gerald C.;
Wellington-Oguri, Roger;
Fujii, Kotaro;
Sharma, Eesha;
Watkins, Andrew M.;
Nicol, John J.;
Romano, Jonathan;
Tunguz, Bojan;
Diaz, Fernando;
Cai, Hui

Publication type:

Article

Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33714-x

By:

Kimura, Satoshi;
Srisuknimit, Veerasak;
McCarty, Kacie L.;
Dedon, Peter C.;
Kranzusch, Philip J.;
Waldor, Matthew K.

Publication type:

Article

Clinical and molecular delineation of PUS3‐associated neurodevelopmental disorders.

Published in:

Clinical Genetics, 2021, v. 100, n. 5, p. 628, doi. 10.1111/cge.14051

By:

Nøstvik, Miriam;
Kateta, Sarah M.;
Schönewolf‐Greulich, Bitten;
Afenjar, Alexandra;
Barth, Magalie;
Boschann, Felix;
Doummar, Diane;
Haack, Tobias B.;
Keren, Boris;
Livshits, Ludmila A.;
Mei, Davide;
Park, Joohyun;
Pisano, Tiziana;
Prouteau, Clement;
Umair, Muhammad;
Waqas, Ahmed;
Ziegler, Alban;
Guerrini, Renzo;
Møller, Rikke S.;
Tümer, Zeynep

Publication type:

Article

PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features.

Published in:

Evolutionary Bioinformatics, 2020, v. 16, p. 1, doi. 10.1177/1176934320925752

By:

Song, Bowen;
Chen, Kunqi;
Tang, Yujiao;
Ma, Jialin;
Meng, Jia;
Wei, Zhen

Publication type:

Article

PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features.

Published in:

Evolutionary Bioinformatics, 2020, p. 1, doi. 10.1177/1176934320925752

By:

Song, Bowen;
Chen, Kunqi;
Tang, Yujiao;
Ma, Jialin;
Meng, Jia;
Wei, Zhen

Publication type:

Article

Higher expression of pseudouridine synthase 7 promotes non-small cell lung cancer progression and suggests a poor prognosis.

Published in:

Journal of Cardiothoracic Surgery, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13019-023-02332-z

By:

Zhang, Guihong;
Zhu, Yongde;
Tan, Yonghuang;
Chen, Biao;
Shan, Shichao;
Zhang, Gengyu;
Lu, Jianjun

Publication type:

Article

Urinary Pseudouridine as a Biochemical Marker in the Diagnosis and Monitoring of Primary Hepatocellular Carcinoma.

Published in:

American Journal of Gastroenterology (Springer Nature), 1988, v. 83, n. 8, p. 841

By:

Tamura, Shinsuke;
Fujioka, Hiroshi;
Nakano, Takashi;
Amuro, Yoshiki;
Hada, Toshikazu;
Higashino, Kazuya;
Nakao, Norio

Publication type:

Article