Works matching DE "PROTEIN models"

Results: 1178

Accurate prediction of virulence factors using pre-train protein language model and ensemble learning.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11694-8

By:

Li, Guanghui;
Zhou, Jian;
Luo, Jiawei;
Liang, Cheng

Publication type:

Article

Anticancer activity prediction of Curcuma longa and Phyllanthus urinaria through computational analysis.

Published in:

Journal of Advanced Pharmaceutical Technology & Research, 2025, v. 16, n. 2, p. 53, doi. 10.4103/JAPTR.JAPTR_209_24

By:

Gondokesumo, Marisca Evalina;
Rasyak, Muhammad Rezki;
Ibrahim, Mansur

Publication type:

Article

A comparison between adjuvant and delivering functions of iron oxide and calcium phosphate nanoparticles, using a model protein against Brucella melitensis.

Published in:

Clinical & Experimental Vaccine Research, 2025, v. 14, n. 1, p. 67, doi. 10.7774/cevr.2025.14.e3

By:

Goudarzi, Tahereh;
Abkar, Morteza;
Fasihi-Ramandi, Mahdi;
Peikar, Mohammadsaleh;
Zamanzadeh, Zahra

Publication type:

Article

The effect of Terebinth oil on Ezrin and Moesin expression levels in rats with ovarian ischemia-reperfusion Injury.

Published in:

Revista Cientifica de la Facultade de Veterinaria, 2025, v. 35, n. 1, p. 1, doi. 10.52973/rcfcv-e35518

By:

Şengül, Gülsüm Pektanç;
Şengül, Seydi Ahmet;
Deveci, Engin

Publication type:

Article

饲料油菜植株粗蛋白含量的遗传规律研究.

Published in:

Feed Research, 2025, v. 48, n. 6, p. 122, doi. 10.13557/j.cnki.issn1002-2813.2025.06.022

By:

张林;
周凌;
王涛;
钟伟;
吴宇瑶;
陈建军;
代文东

Publication type:

Article

M-DeepAssembly: enhanced DeepAssembly based on multi-objective multi-domain protein conformation sampling.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06131-2

By:

Cui, Xinyue;
Xia, Yuhao;
Hou, Minghua;
Zhao, Xuanfeng;
Wang, Suhui;
Zhang, Guijun

Publication type:

Article

Leveraging pretrained deep protein language model to predict peptide collision cross section.

Published in:

Communications Chemistry, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42004-025-01540-z

By:

Nakai-Kasai, Ayano;
Ogata, Kosuke;
Ishihama, Yasushi;
Tanaka, Toshiyuki

Publication type:

Article

DEKP: a deep learning model for enzyme kinetic parameter prediction based on pretrained models and graph neural networks.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf187

By:

Wang, Yizhen;
Cheng, Li;
Zhang, Yanyun;
Cao, Yujia;
Alghazzawi, Daniyal

Publication type:

Article

IDP-EDL: enhancing intrinsically disordered protein prediction by combining protein language model and ensemble deep learning.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf182

By:

Xie, Junxi;
Jin, Xiaopeng;
Wei, Hang;
Sun, SaiSai;
Liu, Yumeng

Publication type:

Article

Deep generative model for protein subcellular localization prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf152

By:

Yuan, Guo-Hua;
Li, Jinzhe;
Yang, Zejun;
Chen, Yao-Qi;
Yuan, Zhonghang;
Chen, Tao;
Ouyang, Wanli;
Dong, Nanqing;
Yang, Li

Publication type:

Article

HSSPPI: hierarchical and spatial-sequential modeling for PPIs prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf079

By:

Li, Yuguang;
Tian, Zhen;
Nan, Xiaofei;
Zhang, Shoutao;
Zhou, Qinglei;
Lu, Shuai

Publication type:

Article

Robustness of Ancestral Sequence Reconstruction to Among-site and Among-lineage Evolutionary Heterogeneity.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf084

By:

Muñiz-Trejo, Ricardo;
Park, Yeonwoo;
Thornton, Joseph W

Publication type:

Article

Reconstruction of Ancestral Protein Sequences Using Autoregressive Generative Models.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf070

By:

Leonardis, Matteo De;
Pagnani, Andrea;
Barrat-Charlaix, Pierre

Publication type:

Article

Development of Alpha-Synuclein protein model against therapeutic aspects of Parkinson's disease.

Published in:

Indian Journal of Pharmacology, 2024, v. 56, n. 1, p. 37, doi. 10.4103/ijp.ijp_325_23

By:

Bhardwaj, Kanika;
Rajawat, Neelu Kanwar;
Mathur, Nupur

Publication type:

Article

MoRF_ESM: Prediction of MoRFs in disordered proteins based on a deep transformer protein language model.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 2, p. 1, doi. 10.1142/S0219720024500069

By:

Fang, Chun;
He, Jiasheng;
Yamana, Hayato

Publication type:

Article

Scaling laws of graphs of 3D protein structures.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 3, p. N.PAG, doi. 10.1142/S021972002050050X

By:

Pražnikar, Jure

Publication type:

Article

Refined template selection and combination algorithm significantly improves template-based modeling accuracy.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 2, p. N.PAG, doi. 10.1142/S0219720019500069

By:

Runthala, Ashish;
Chowdhury, Shibasish

Publication type:

Article

Thiol‐Click Based Polyglycerol Hydrogels as Biosensing Platform with In Situ Encapsulated Streptavidin Probes.

Published in:

Macromolecular Chemistry & Physics, 2023, v. 224, n. 1, p. 1, doi. 10.1002/macp.202200271

By:

Thongrom, Boonya;
Dimde, Mathias;
Schedler, Uwe;
Haag, Rainer

Publication type:

Article

Interaction of the Immune System TIM-3 Protein with a Model Cellular Membrane Containing Phosphatidyl-Serine Lipids.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 22, p. 1, doi. 10.1002/chem.202304318

By:

Delova, Anastasiia;
Pasc, Andreea;
Monari, Antonio

Publication type:

Article

Front Cover: Characterization of Asx Turn Types and Their Connate Relationship with β‐Turns (Chem. Eur. J. 25/2022).

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 25, p. 1, doi. 10.1002/chem.202200968

By:

D'mello, Viola C.;
Goldsztejn, Gildas;
Rao Mundlapati, Venkateswara;
Brenner, Valérie;
Gloaguen, Eric;
Charnay‐Pouget, Florence;
Aitken, David J.;
Mons, Michel

Publication type:

Article

A novel method for the in vitro assembly of virus-like particles and multimeric proteins.

Published in:

Biotechnology Letters, 2021, v. 43, n. 6, p. 1155, doi. 10.1007/s10529-021-03093-2

By:

Rodríguez, Mabel;
Castro-Acosta, Ricardo M.;
Ruiz-Morales, Elias R.;
Villanueva-Flores, Francisca;
Ramírez, Octavio T.;
Palomares, Laura A.

Publication type:

Article

Small design from big alignment: engineering proteins with multiple sequence alignment as the starting point.

Published in:

Biotechnology Letters, 2020, v. 42, n. 8, p. 1305, doi. 10.1007/s10529-020-02914-0

By:

Wang, Tianwen;
Liang, Chen;
Hou, Yajing;
Zheng, Mengyuan;
Xu, Hongju;
An, Yafei;
Xiao, Sa;
Liu, Lu;
Lian, Shuaibin

Publication type:

Article

Feasible development of stable HEK293 clones by CRISPR/Cas9-mediated site-specific integration for biopharmaceuticals production.

Published in:

Biotechnology Letters, 2019, v. 41, n. 8/9, p. 941, doi. 10.1007/s10529-019-02702-5

By:

Yang, Hui;
Wang, Jiaxian;
Zhao, Menglin;
Zhu, Jianwei;
Zhang, Mengxiao;
Wang, Ziyan;
Gao, Yang;
Zhu, Wen;
Lu, Huili

Publication type:

Article

Optimal clustering for quantum refinement of biomolecular structures: Q|R#4.

Published in:

Theoretical Chemistry Accounts: Theory, Computation, & Modeling, 2023, v. 142, n. 10, p. 1, doi. 10.1007/s00214-023-03046-0

By:

Wang, Yaru;
Kruse, Holger;
Moriarty, Nigel W.;
Waller, Mark P.;
Afonine, Pavel V.;
Biczysko, Malgorzata

Publication type:

Article

DPP4 inhibitor reinforces cell junction proteins in mouse model of short bowel syndrome.

Published in:

Pediatric Surgery International, 2020, v. 36, n. 1, p. 49, doi. 10.1007/s00383-019-04571-5

By:

Sueyoshi, Ryo;
Miyahara, Katsumi;
Nakazawa-Tanaka, Nana;
Fujiwara, Naho;
Ochi, Takanori;
Yamataka, Atsuyuki

Publication type:

Article

Efficacy of the Technologically Processed Antibodies to the Brain-Specific S100 Protein in a Rat Model of Hemorrhagic Stroke.

Published in:

Bulletin of Experimental Biology & Medicine, 2023, v. 174, n. 6, p. 741, doi. 10.1007/s10517-023-05783-5

By:

Kardash, E. V.;
Ertuzun, I. A.;
Alekseeva, I. V.;
Tarasov, S. A.

Publication type:

Article

Effects of Wenyang Zhenshuai Granules on the Expression of Key Mitochondrial Autophagy Proteins in the Doxorubicin-Induced Model of H9c2 Cardiomyocyte Injury.

Published in:

Bulletin of Experimental Biology & Medicine, 2022, v. 173, n. 3, p. 335, doi. 10.1007/s10517-022-05545-9

By:

Peng, L. Q.;
Wu, X. X.;
Chen, G.;
Cai, H. Z.;
Tang, Y. P.;
Chen, Q. Y.;
Chen, X. Y.

Publication type:

Article

Molecular Modeling as a New Approach to the Development of Urokinase Inhibitors.

Published in:

Bulletin of Experimental Biology & Medicine, 2015, v. 158, n. 5, p. 700, doi. 10.1007/s10517-015-2839-3

By:

Beloglazova, I.;
Plekhanova, O.;
Katkova, E.;
Rysenkova, K.;
Stambol'skii, D.;
Sulimov, V.;
Tkachuk, V.

Publication type:

Article

Cheese-whey permeate improves the fitness of Escherichia coli cells during recombinant protein production.

Published in:

Biotechnology for Biofuels & Bioproducts, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13068-023-02281-8

By:

de Divitiis, Marcella;
Ami, Diletta;
Pessina, Alex;
Palmioli, Alessandro;
Sciandrone, Barbara;
Airoldi, Cristina;
Regonesi, Maria Elena;
Brambilla, Luca;
Lotti, Marina;
Natalello, Antonino;
Brocca, Stefania;
Mangiagalli, Marco

Publication type:

Article

A glutathione S‐transferase PcGSTMu2 involved in the detoxification of bifenazate in Panonychus citri.

Published in:

Pest Management Science, 2025, v. 81, n. 1, p. 372, doi. 10.1002/ps.8440

By:

Li, Ming‐yue;
Cheng, Lu‐yan;
Li, Si‐chen;
Fang, Yun‐hong;
Shao, Bin‐bin;
Cui, Yang‐yang;
Wei, Zhi‐tang;
Yu, Shi‐jiang;
Ran, Chun

Publication type:

Article

TransBind allows precise detection of DNA-binding proteins and residues using language models and deep learning.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07534-w

By:

Tahmid, Md Toki;
Hasan, A.K.M. Mehedi;
Bayzid, Md Shamsuzzoha

Publication type:

Article

Polysaccharide Functionality in Wine-like Model Systems with Oat and Egg White Model Proteins.

Published in:

Fermentation (Basel), 2024, v. 10, n. 11, p. 573, doi. 10.3390/fermentation10110573

By:

Burken, Olivia;
Sommer, Stephan

Publication type:

Article

A Universal Strategy for the Efficient Expression of Nanobodies in Pichia pastoris.

Published in:

Fermentation (Basel), 2024, v. 10, n. 1, p. 37, doi. 10.3390/fermentation10010037

By:

Zheng, Yiheng;
Li, Bingkun;
Zhao, Shida;
Liu, Jiawei;
Li, Ding

Publication type:

Article

Implementing an Agent-Based Modeling Approach for Protein Glycosylation in the Golgi Apparatus.

Published in:

Fermentation (Basel), 2023, v. 9, n. 9, p. 849, doi. 10.3390/fermentation9090849

By:

Jetschni, Christian;
Götz, Peter

Publication type:

Article

Modelizar y construir representaciones externas sobre la síntesis de proteínas: un estudio de diseño en la escuela secundaria.

Published in:

Didáctica de las Ciencias Experimentales y Sociales, 2022, n. 42, p. 119, doi. 10.7203/DCES.42.20945

By:

Occelli, Maricel;
Pomar, Susana;
Adrianna Gómez Galindo, Alma

Publication type:

Article

Redox Gradient Shapes the Chemical Composition of Peatland Microbial Communities.

Published in:

Geobiology, 2024, v. 22, n. 6, p. 1, doi. 10.1111/gbi.70001

By:

Milesi, Vincent P.

Publication type:

Article

The impact of β-glucan on the stability of model dairy protein dispersions.

Published in:

Journal of Animal Science, 2006, v. 84, p. 175

By:

Bock, J. E.;
Schmidt, K. A.;
Milliken, G. E.

Publication type:

Article

Effects of replacement of animal protein with soy protein in lactating Holstein cows.

Published in:

Journal of Animal Science, 2006, v. 84, p. 80

By:

Garcia, A.;
Jardon, P. W.;
Patton, R. A.

Publication type:

Article

How microwaves can help to study membrane ageing.

Published in:

Environmental Technology, 2020, v. 41, n. 18, p. 2314, doi. 10.1080/09593330.2018.1564072

By:

Rabiller-Baudry, M.;
Paquin, L.;
Lepéroux, C.;
Diallo, H.;
Al Jawad, H.;
Sepré, C.

Publication type:

Article

IMPLEMENTATION OF MACHINE LEARNING MODELS TO DETERMINE THE APPROPRIATE MODEL FOR PROTEIN FUNCTION PREDICTION.

Published in:

Eastern-European Journal of Enterprise Technologies, 2022, v. 119, n. 4, p. 42, doi. 10.15587/1729-4061.2022.263270

By:

Golenko, Yekaterina;
Ismailova, Aisulu;
Shaushenova, Anargul;
Mutalova, Zhazira;
Dossalyanov, Damir;
Ainagulova, Aliya;
Naizagarayeva, Akgul

Publication type:

Article

Exploring protein structural ensembles: Integration of sparse experimental data from electron paramagnetic resonance spectroscopy with molecular modeling methods.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.99770

By:

Belyaeva, Julia;
Elgeti, Matthias

Publication type:

Article

Accurate prediction of CDR-H3 loop structures of antibodies with deep learning.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.91512

By:

Hedi Chen;
Xiaoyu Fan;
Shuqian Zhu;
Yuchan Pei;
Xiaochun Zhang;
Xiaonan Zhang;
Lihang Liu;
Feng Qian;
Boxue Tian

Publication type:

Article

Sensitive remote homology search by local alignment of small positional embeddings from protein language models.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.91415

By:

Johnson, Sean R.;
Peshwa, Meghana;
Zhiyi Sun

Publication type:

Article

Structural foundation for the role of enterococcal PrgB in conjugation, biofilm formation, and virulence.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.84427

By:

Wei-Sheng Sun;
Lassinantti, Lena;
Järvå, Michael;
Schmitt, Andreas;
ter Beek, Josy;
Berntsson, Ronnie P.-A.

Publication type:

Article

Estimating the true stability of the prehydrolytic outward-facing state in an ABC protein.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.90736

By:

Simon, Márton A.;
Iordanov, Iordan;
Szollosi, Andras;
Csanády, László

Publication type:

Article

Mutated neuron navigator 3 as a candidate gene for a rare neurodevelopmental disorder.

Published in:

Molecular Genetics & Genomic Medicine, 2024, v. 12, n. 7, p. 1, doi. 10.1002/mgg3.2473

By:

Umair, Muhammad;
Alharbi, Meshael;
Aloyouni, Essra;
Al Abdulrahman, Abdulkareem;
Aldrees, Mohammed;
Al Tuwaijri, Abeer;
Bilal, Muhammad;
Alfadhel, Majid

Publication type:

Article

Characterization of a novel COL10A1 variant associated with Schmid‐type metaphyseal chondrodysplasia and a literature review.

Published in:

Molecular Genetics & Genomic Medicine, 2021, v. 9, n. 5, p. 1, doi. 10.1002/mgg3.1668

By:

Wu, Huixiao;
Wang, Shuping;
Li, Guimei;
Yao, Yangyang;
Wang, Ning;
Sun, Xiaoqing;
Fang, Li;
Jiang, Xiuyun;
Zhao, Jiajun;
Wang, Yanzhou;
Xu, Chao

Publication type:

Article

Novel SARS2 variants identified in a Chinese girl with HUPRA syndrome.

Published in:

Molecular Genetics & Genomic Medicine, 2021, v. 9, n. 4, p. 1, doi. 10.1002/mgg3.1650

By:

Zhou, Yi;
Zhong, Cheng;
Yang, Qin;
Zhang, Gaofu;
Yang, Haiping;
Li, Qiu;
Wang, Mo

Publication type:

Article

Novel KLHL26 variant associated with a familial case of Ebstein's anomaly and left ventricular noncompaction.

Published in:

Molecular Genetics & Genomic Medicine, 2020, v. 8, n. 4, p. 1, doi. 10.1002/mgg3.1152

By:

Samudrala, Sai Suma K.;
North, Lauren M.;
Stamm, Karl D.;
Earing, Michael G.;
Frommelt, Michele A.;
Willes, Richard;
Tripathi, Swarnendu;
Dsouza, Nikita R.;
Zimmermann, Michael T.;
Mahnke, Donna K.;
Liang, Huan Ling;
Lund, Michael;
Lin, Chien‐Wei;
Geddes, Gabrielle C.;
Mitchell, Michael E.;
Tomita‐Mitchell, Aoy

Publication type:

Article

Novel VAC14 variants identified in two Chinese siblings with childhood‐onset striatonigral degeneration.

Published in:

Molecular Genetics & Genomic Medicine, 2020, v. 8, n. 2, p. N.PAG, doi. 10.1002/mgg3.1101

By:

Liao, Shuang;
Chen, Tingting;
Dai, Ying;
Wang, Yanqin;
Wu, Fangrui;
Zhong, Min

Publication type:

Article