Works matching DE "PROTEIN folding"

Results: 5000

Prion Folding Sends a Death Signal in Fungus.

Published in:

PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002058

By:

Robinson, Richard

Publication type:

Article

Conformational Changes during Pore Formation by the Perforin-Related Protein Pleurotolysin.

Published in:

PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002049

By:

Lukoyanova, Natalya;
Kondos, Stephanie C.;
Farabella, Irene;
Law, Ruby H. P.;
Reboul, Cyril F.;
Caradoc-Davies, Tom T.;
Spicer, Bradley A.;
Kleifeld, Oded;
Traore, Daouda A. K.;
Ekkel, Susan M.;
Voskoboinik, Ilia;
Trapani, Joseph A.;
Hatfaludi, Tamas;
Oliver, Katherine;
Hotze, Eileen M.;
Tweten, Rodney K.;
Whisstock, James C.;
Topf, Maya;
Saibil, Helen R.;
Dunstone, Michelle A.

Publication type:

Article

Signal Transduction by a Fungal NOD-Like Receptor Based on Propagation of a Prion Amyloid Fold.

Published in:

PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002059

By:

Daskalov, Asen;
Habenstein, Birgit;
Martinez, Denis;
Debets, Alfons J. M.;
Sabaté, Raimon;
Loquet, Antoine;
Saupe, Sven J.

Publication type:

Article

The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot.

Published in:

PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002083

By:

Sardana, Richa;
Liu, Xin;
Granneman, Sander;
Zhu, Jieyi;
Gill, Michael;
Papoulas, Ophelia;
Marcotte, Edward M.;
Tollervey, David;
Correll, Carl C.;
Johnson, Arlen W.

Publication type:

Article

How Folded Brains Evolved in Mammals.

Published in:

PLoS Biology, 2014, v. 12, n. 11, p. 1, doi. 10.1371/journal.pbio.1002001

By:

Weaver, Janelle

Publication type:

Article

Living in Constant Crisis—When Stress Management Becomes the Problem.

Published in:

PLoS Biology, 2014, v. 12, n. 11, p. 1, doi. 10.1371/journal.pbio.1001999

By:

Roberts, Roland G.

Publication type:

Article

Modulation of the Maladaptive Stress Response to Manage Diseases of Protein Folding.

Published in:

PLoS Biology, 2014, v. 12, n. 11, p. 1, doi. 10.1371/journal.pbio.1001998

By:

Roth, Daniela Martino;
Hutt, Darren M.;
Tong, Jiansong;
Bouchecareilh, Marion;
Wang, Ning;
Seeley, Theo;
Dekkers, Johanna F.;
Beekman, Jeffrey M.;
Garza, Dan;
Drew, Lawrence;
Masliah, Eliezer;
Morimoto, Richard I.;
Balch, William E.

Publication type:

Article

Positively Charged Residues Are the Major Determinants of Ribosomal Velocity.

Published in:

PLoS Biology, 2013, v. 11, n. 3, p. 1, doi. 10.1371/journal.pbio.1001508

By:

Charneski, Catherine A.;
Hurst, Laurence D.

Publication type:

Article

BiP Binding to the ER-Stress Sensor Ire1 Tunes the Homeostatic Behavior of the Unfolded Protein Response.

Published in:

PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000415

By:

Pincus, David;
Chevalier, Michael W.;
Aragón, Tomás;
van Anken, Eelco;
Vidal, Simon E.;
El-Samad, Hana;
Walter, Peter

Publication type:

Article

mRNA Secondary Structures Fold Sequentially But Exchange Rapidly In Vivo.

Published in:

PLoS Biology, 2010, v. 8, n. 2, p. 1, doi. 10.1371/journal.pbio.1000307

By:

Mahen, Elisabeth M.;
Watson, Peter Y.;
Cottrell, Joseph W.;
Fedor, Martha J.

Publication type:

Article

Modulation of Heat Shock Transcription Factor 1 as a Therapeutic Target for Small Molecule Intervention in Neurodegenerative Disease.

Published in:

PLoS Biology, 2010, v. 8, n. 1, p. 1, doi. 10.1371/journal.pbio.1000291

By:

Neef, Daniel W.;
Turski, Michelle L.;
Thiele, Dennis J.

Publication type:

Article

Targeting Misfolded Proteins to Fight Neurodegenerative Diseases.

Published in:

PLoS Biology, 2010, v. 8, n. 1, p. 1, doi. 10.1371/journal.pbio.1000290

By:

Heller, Kira

Publication type:

Article

Charting an Unknown Protein Universe.

Published in:

PLoS Biology, 2009, v. 7, n. 9, p. 1, doi. 10.1371/journal.pbio.1000206

By:

Heller, Kira

Publication type:

Article

Exploration of Uncharted Regions of the Protein Universe.

Published in:

PLoS Biology, 2009, v. 7, n. 9, p. 1, doi. 10.1371/journal.pbio.1000205

By:

Jaroszewski, Lukasz;
Zhanwen Li;
Krishna, S. Sri;
Bakolitsa, Constantina;
Wooley, John;
Deacon, Ashley M.;
Wilson, Ian A.;
Godzik, Adam

Publication type:

Article

The Threat of Instability: Neurodegeneration Predicted by Protein Destabilization and Aggregation Propensity.

Published in:

PLoS Biology, 2008, v. 6, n. 7, p. e193, doi. 10.1371/journal.pbio.0060193

By:

Meiering, Elizabeth M.

Publication type:

Article

Apoptosis Versus Survival: When in Doubt, Choose Both.

Published in:

PLoS Biology, 2006, v. 4, n. 11, p. 1897, doi. 10.1371/journal.pbio.0040408

By:

Robinson, Richard

Publication type:

Article

COYOTE: Sequence-derived structural descriptors-based computational identification of glycoproteins.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 5, p. 1, doi. 10.1142/S0219720022500196

By:

Abbasi, Wajid Arshad;
Anjam, Asma;
Khalil, Sadia;
Andleeb, Saiqa;
Bibi, Maryum;
Abbas, Syed Ali

Publication type:

Article

A novel model-based on FCM-LM algorithm for prediction of protein folding rate.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 4, p. -1, doi. 10.1142/S0219720017500123

By:

Liu, Longlong;
Ma, Mingjiao;
Cui, Jing

Publication type:

Article

A novel Multi-Agent Ada-Boost algorithm for predicting protein structural class with the information of protein secondary structure.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 5, p. -1, doi. 10.1142/S0219720015500225

By:

Fan, Ming;
Zheng, Bin;
Li, Lihua

Publication type:

Article

The study of unfoldable self-avoiding walks - Application to protein structure prediction software.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S0219720015500092

By:

Guyeux, Christophe;
Nicod, Jean-Marc;
Philippe, Laurent;
Bahi, Jacques M.

Publication type:

Article

Interaction sorting method for molecular dynamics on multi-core SIMD CPU architecture.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 1, p. -1, doi. 10.1142/S0219720015400041

By:

Matvienko, Sergey;
Alemasov, Nikolay;
Fomin, Eduard

Publication type:

Article

Assessment of optimized Markov models in protein fold classification.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 4, p. 1, doi. 10.1142/S0219720014500164

By:

Lampros, Christos;
Simos, Thomas;
Exarchos, Themis P.;
Exarchos, Konstantinos P.;
Papaloukas, Costas;
Fotiadis, Dimitrios I.

Publication type:

Article

IS PROTEIN FOLDING PROBLEM REALLY A NP-COMPLETE ONE? FIRST INVESTIGATIONS.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 1, p. -1, doi. 10.1142/S0219720013500170

By:

GUYEUX, CHRISTOPHE;
CÔTÉ, NATHALIE M.-L.;
BAHI, JACQUES M.;
BIENIA, WOJCIECH

Publication type:

Article

SHEEP:: A TOOL FOR DESCRIPTION OF β-SHEETS IN PROTEIN 3D STRUCTURES.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 2, p. 1241003-1, doi. 10.1142/S021972001241003X

By:

AKSIANOV, EVGENIY;
ALEXEEVSKI, ANDREI

Publication type:

Article

FOLDING ELASTIC TRANSMEMBRANE HELICES TO FIT IN A LOW-RESOLUTION IMAGE BY ELECTRON MICROSCOPY.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 37, doi. 10.1142/S0219720011005720

By:

UENO, YUTAKA;
KAWASAKI, KAZUNORI;
SAITO, OSAMU;
ARAI, MASAFUMI;
SUWA, MAKIKO

Publication type:

Article

SVM-BASED METHOD FOR PROTEIN STRUCTURAL CLASS PREDICTION USING SECONDARY STRUCTURAL CONTENT AND STRUCTURAL INFORMATION OF AMINO ACIDS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 489, doi. 10.1142/S0219720011005422

By:

MOHAMMAD, TABREZ ANWAR SHAMIM;
NAGARAJARAM, HAMPAPATHALU ADIMURTHY

Publication type:

Article

BRIEF INTRODUCTION TO SOME NEW PAPERS ON LATERAL TRANSFER RECONSTRUCTION, DRUG CANDIDATE SCREENING, DISEASE GENE IDENTIFICATION, AND OTHER RESULTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. v, doi. 10.1142/S0219720011005653

By:

Wong, Limsoon

Publication type:

Article

PREDICTING PROTEIN FOLDING RATE FROM AMINO ACID SEQUENCE.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 1, doi. 10.1142/S0219720011005306

By:

GUO, JIANXIU;
RAO, NINI

Publication type:

Article

RECENT ADVANCES ON STRUCTURAL BIOINFORMATICS, CELL MOTION SIMULATION, FUNCTIONAL MODULE IDENTIFICATION, COPY NUMBER VARIATION, AND PROTEASE SUBSTRATE PREDICTION AND SOME CRITICAL COMMENTS ON HMMER2.

Published in:: Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. v, doi. 10.1142/S0219720011005380
Publication type:: Article

FUNCTIONAL CLASSIFICATION OF PROTEIN 3D STRUCTURES FROM PREDICTED LOCAL INTERACTION SITES.

Published in:

Journal of Bioinformatics & Computational Biology, 2010, v. 8, p. 1, doi. 10.1142/S0219720010005166

By:

PARASURAM, RAMYA;
LEE, JOSLYNN S.;
YIN, PENGCHENG;
SOMAROWTHU, SRINIVAS;
ONDRECHEN, MARY JO

Publication type:

Article

PROTEIN FOLD CLASSIFICATION WITH GENETIC ALGORITHMS AND FEATURE SELECTION.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 5, p. 773, doi. 10.1142/S0219720009004321

By:

CHEN, PENG;
LIU, CHUNMEI;
BURGE, LEGAND;
MAHMOOD, MOHAMMAD;
SOUTHERLAND, WILLIAM;
GLOSTER, CLAY

Publication type:

Article

CONSTANT TIME CLASH DETECTION IN PROTEIN FOLDING.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 1, p. 55, doi. 10.1142/S0219720009003996

By:

BUGALHO, MIGUEL M. F.;
OLIVEIRA, ARLINDO L.

Publication type:

Article

MINING OVERREPRESENTED 3D PATTERNS OF SECONDARY STRUCTURES IN PROTEINS.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 6, p. 1067, doi. 10.1142/S0219720008003849

By:

COMIN, MATTEO;
GUERRA, CONCETTINA;
ZANOTTI, GIUSEPPE

Publication type:

Article

MANY-ATOM VAN DER WAALS INTERACTIONS LEAD TO DIRECTION-SENSITIVE INTERACTIONS OF COVALENT BONDS.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 4, p. 693, doi. 10.1142/S0219720008003606

By:

FINKELSTEIN, ALEXEI V.;
LOBANOV, MICHAEL Y.;
DOVIDCHENKO, NIKITA V.;
BOGATYREVA, NATALIA S.

Publication type:

Article

COMPACTNESS DETERMINES PROTEIN FOLDING TYPE.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 4, p. 667, doi. 10.1142/S0219720008003618

By:

GALZITSKAYA, OXANA V.;
BOGATYREVA, NATALYA S.;
IVANKOV, DMITRY N.

Publication type:

Article

SEARCH FOR FOLDING INITIATION SITES FROM AMINO ACID SEQUENCE.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 4, p. 681, doi. 10.1142/S021972000800362X

By:

GALZITSKAYA, OXANA V.

Publication type:

Article

TALI:: LOCAL ALIGNMENT OF PROTEIN STRUCTURES USING BACKBONE TORSION ANGLES.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 1, p. 163, doi. 10.1142/S0219720008003370

By:

XIJIANG MIAO;
WADDELL, PETER J.;
VALAFAR, HOMAYOUN

Publication type:

Article

A WAVELET APPROACH FOR THE ANALYSIS OF FOLDING TRAJECTORY OF PROTEIN TRP-CAGE.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 6, p. 1351, doi. 10.1142/S0219720005001594

By:

YE, LEI;
CHEN, HUAJUN;
LIU, TING;
WU, ZHAOHUI;
LI, JINGYUAN;
ZHOU, RUHONG

Publication type:

Article

COVARIATION ANALYSIS OF LOCAL AMINO ACID SEQUENCES IN RECURRENT PROTEIN LOCAL STRUCTURES.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 6, p. 1391, doi. 10.1142/S0219720005001648

By:

WANG, LU-YONG

Publication type:

Article

PROTEIN STRUCTURE AND FOLD PREDICTION USING TREE-AUGMENTED NAÏVE BAYESIAN CLASSIFIER.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 4, p. 803, doi. 10.1142/S0219720005001302

By:

CHINNASAMY, ARUNKUMAR;
WING-KIN SUNG;
MITTAL, ANKUSH

Publication type:

Article

ALIGNING MULTIPLE PROTEIN STRUCTURES BY DETERMINISTIC ANNEALING.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 4, p. 837, doi. 10.1142/S0219720005001351

By:

TIANSHOU ZHOU;
LUONAN CHEN;
YUN TANG;
XIANGSUN ZHANG

Publication type:

Article

EXPLORING PROTEIN'S OPTIMAL HP CONFIGURATIONS BY SELF-ORGANIZING MAPPING.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 2, p. 385, doi. 10.1142/S0219720005001107

By:

ZHANG, XIANG-SUN;
WANG, YONG;
ZHAN, ZHONG-WEI;
WU, LING-YUN;
CHEN, LUONAN

Publication type:

Article

PROTEIN FOLDING ON THE HEXAGONAL LATTICE IN THE HP MODEL.

Published in:

Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 1, p. 19, doi. 10.1142/S0219720005000850

By:

Minghui Jiang;
Binhai Zhu

Publication type:

Article

Effect of Macromolecular Crowders on the Self‐Assembly Process of Silk Fibroin.

Published in:

Macromolecular Chemistry & Physics, 2020, v. 221, n. 16, p. 1, doi. 10.1002/macp.202000113

By:

Dubey, Priyanka;
Seit, Sinchan;
Chowdhury, Pramit K.;
Ghosh, Sourabh

Publication type:

Article

Site‐specifically Phosphorylated Hsp90C‐terminal Domain Variants Provide Access to Deciphering the Chaperone Code.

Published in:

Chemistry - A European Journal, 2025, v. 31, n. 6, p. 1, doi. 10.1002/chem.202403676

By:

Gajsek, Oliver;
Becker, Christian F. W.;
Conibear, Anne C.

Publication type:

Article

Fluorine Labeling and <sup>19</sup>F NMR Spectroscopy to Study Biological Molecules and Molecular Complexes.

Published in:

Chemistry - A European Journal, 2025, v. 31, n. 2, p. 1, doi. 10.1002/chem.202402820

By:

Werle, Yannick;
Kovermann, Michael

Publication type:

Article

Backbone Modification in a Protein Hydrophobic Core.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 45, p. 1, doi. 10.1002/chem.202401890

By:

Lin, Yuhan;
Horne, W. Seth

Publication type:

Article

Contemporary Applications of Thioamides and Methods for Their Synthesis.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 9, p. 1, doi. 10.1002/chem.202303770

By:

Hansen, Tobias N.;
Olsen, Christian A.

Publication type:

Article

Assembling Molecular Clips To Build π‐Stacks.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 67, p. 1, doi. 10.1002/chem.202302523

By:

Lee, Hyun;
Lee, Dongwhan

Publication type:

Article

New Hypothesis Insight of Structural Properties on Four Tau Peptide Fragments in Alzheimer's Disease: Origin from the Histidine Behaviors.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 37, p. 1, doi. 10.1002/chem.202300868

By:

Sun, Yue;
Li, Changgui;
Wang, Jinping;
Shi, Hu

Publication type:

Article