Works about PROTEIN binding

Results: 5000

Identification of Potential Hub Proteins as Theragnostic Targets in Hepatocellular Carcinoma through Comprehensive Quantitative Tissue Proteomics Analysis.

Published in:

Cancer Informatics, 2025, p. 1, doi. 10.1177/11769351251336923

By:

Abedin, Quratul;
Bibi, Kulsoom;
von Kriegsheim, Alex;
Hashim, Zehra;
Ilyas, Amber

Publication type:

Article

Regulating Protein Immobilization During Cell‐Free Protein Synthesis in Hyaluronan Microgels.

Published in:

Advanced Biology, 2025, v. 9, n. 5, p. 1, doi. 10.1002/adbi.202400668

By:

Kaufmann, Anika;
Ivanova, Kateryna;
Thiele, Julian

Publication type:

Article

Identification of a Highly Conserved Region Critical for the Functionality of the Cp190 Protein in Drosophila melanogaster.

Published in:

Doklady Biochemistry & Biophysics, 2025, v. 521, n. 1, p. 178, doi. 10.1134/S1607672924601434

By:

Melnikova, L. S.;
Balagurov, K. I.;
Georgiev, P. G.;
Golovnin, A. K.

Publication type:

Article

Transcriptome and Proteome Analysis Identify Decorin as a Principal Antifibrotic Component Trapping TGF‐β1 Within Adipose‐Derived Stem Cell Secretome.

Published in:

Stem Cells International, 2025, v. 2025, p. 1, doi. 10.1155/sci/1416567

By:

Kang, Lin;
Li, Zhujun;
Li, Fangyuan;
Li, Ziming;
Wang, Liquan;
Li, Tianhao;
Xiang, Jieyu;
Tseng, Songlu;
Yu, Nanze;
Huang, Jiuzuo;
Long, Xiao;
Suga, Hirotaka

Publication type:

Article

Controlling Cellular Behavior by Surface Design of Titanium-based Biomaterials.

Published in:

In Vivo, 2025, v. 39, n. 3, p. 1786, doi. 10.21873/invivo.13980

By:

ANDREEVA, TONYA;
AKBAS, OSMAN;
JAHN, ANNE;
GREULING, ANDREAS;
WINKEL, ANDREAS;
STIESCH, MEIKE;
KRASTEV, RUMEN

Publication type:

Article

In silico design of novel pyridazine derivatives as balanced multifunctional agents against Alzheimer's disease.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-98182-x

By:

Aloui, Mourad;
El fadili, Mohamed;
Mujwar, Somdutt;
Er-rajy, Mohammed;
Abuelizz, Hatem A.;
Er-rahmani, Sara;
Zarougui, Sara;
Menana, Elhalaoui

Publication type:

Article

Native mass spectrometry for proximity-inducing compounds: a new opportunity for studying chemical-induced protein modulation.

Published in:

Expert Opinion on Drug Discovery, 2025, v. 20, n. 5, p. 643, doi. 10.1080/17460441.2025.2486146

By:

Fabbrizi, Emanuele;
Fiorentino, Francesco;
Casano, Fabrizio;
Mai, Antonello;
Rotili, Dante

Publication type:

Article

Effect of Silver Nanoclusters on the Copper Resistance of Achromobacter insolitus LCu2.

Published in:

Microbiology (00262617), 2025, v. 94, n. 2, p. 299, doi. 10.1134/S002626172460993X

By:

Burygin, G. L.;
Astankova, A. S.;
Chumakov, D. S.;
Kryuchkova, E. V.

Publication type:

Article

DockEM: an enhanced method for atomic-scale protein–ligand docking refinement leveraging low-to-medium resolution cryo-EM density maps.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf091

By:

Zou, Jing;
Zhang, Wenyi;
Hu, Jun;
Zhou, Xiaogen;
Zhang, Biao

Publication type:

Article

Antiaging Action of Retinol: From Molecular to Clinical.

Published in:

Skin Pharmacology & Physiology, 2009, v. 22, n. 4, p. 200

By:

Stamatas, Bellemère;
Bertin, Bruère;
Oddos, Issachar

Publication type:

Article

Mapping the Free Energy Landscape of PKA Inhibition and Activation: A Double-Conformational Selection Model for the Tandem cAMP-Binding Domains of PKA RIα.

Published in:

PLoS Biology, 2015, v. 13, n. 12, p. 1, doi. 10.1371/journal.pbio.1002305

By:

Akimoto, Madoka;
McNicholl, Eric Tyler;
Ramkissoon, Avinash;
Moleschi, Kody;
Taylor, Susan S.;
Melacini, Giuseppe

Publication type:

Article

Tandem Domains with Tuned Interactions Are a Powerful Biological Design Principle.

Published in:

PLoS Biology, 2015, v. 13, n. 12, p. 1, doi. 10.1371/journal.pbio.1002306

By:

Nussinov, Ruth;
Tsai, Chung-Jung

Publication type:

Article

Retraction: The RNA-Binding Protein KSRP Promotes Decay of β-Catenin mRNA and Is Inactivated by PI3K-AKT Signaling.

Published in:

2015

By:

Gherzi, Roberto;
Trabucchi, Michele;
Ponassi, Marco;
Ruggiero, Tina;
Corte, Giorgio;
Moroni, Christoph;
Chen, Ching-Yi;
Khabar, Khalid S;
Andersen, Jens S;
Briata, Paola

Publication type:

Correction Notice

Destabilizing DNA during Rejoining Enhances Fidelity of Repair.

Published in:

PLoS Biology, 2015, v. 13, n. 8, p. 1, doi. 10.1371/journal.pbio.1002214

By:

Robinson, Richard

Publication type:

Article

Fission Yeast Pxd1 Promotes Proper DNA Repair by Activating Rad16<sup>XPF</sup> and Inhibiting Dna2.

Published in:

PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001946

By:

Zhang, Jia-Min;
Liu, Xiao-Man;
Ding, Yue-He;
Xiong, Liang-Yao;
Ren, Jing-Yi;
Zhou, Zhi-Xiong;
Wang, Hai-Tao;
Zhang, Mei-Jun;
Yu, Yang;
Dong, Meng-Qiu;
Du, Li-Lin

Publication type:

Article

Ligands for Pheromone-Sensing Neurons Are Not Conformationally Activated Odorant Binding Proteins.

Published in:

PLoS Biology, 2013, v. 11, n. 4, p. 1, doi. 10.1371/journal.pbio.1001546

By:

Gomez-Diaz, Carolina;
Reina, Jaime H.;
Cambillau, Christian;
Benton, Richard

Publication type:

Article

A Force-Activated Trip Switch Triggers Rapid Dissociation of a Colicin from Its Immunity Protein.

Published in:

PLoS Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1371/journal.pbio.1001489

By:

Farrance, Oliver E.;
Hann, Eleanore;
Kaminska, Renata;
Housden, Nicholas G.;
Derrington, Sasha R.;
Kleanthous, Colin;
Radford, Sheena E.;
Brockwell, David J.

Publication type:

Article

Loss of Microtubule-to-Actin Linkage Disrupts Cortical Development.

Published in:

PLoS Biology, 2011, v. 9, n. 10, p. 1, doi. 10.1371/journal.pbio.1001175

By:

Robinson, Richard

Publication type:

Article

The Bacterial Fimbrial Tip Acts as a Mechanical Force Sensor.

Published in:: PLoS Biology, 2011, v. 9, n. 5, p. 1, doi. 10.1371/journal.pbio.1000617
Publication type:: Article

The Function and Three-Dimensional Structure of a Thromboxane A<sub>2</sub>/Cysteinyl Leukotriene-Binding Protein from the Saliva of a Mosquito Vector of the Malaria Parasite.

Published in:

PLoS Biology, 2010, v. 8, n. 11, p. 1, doi. 10.1371/journal.pbio.1000547

By:

Alvarenga, Patricia H.;
Francischetti, Ivo M. B.;
Calvo, Eric;
Sá-Nunes, Anderson;
Ribeiro, José M. C.;
Andersen, John F.

Publication type:

Article

A Bacterial Ras-Like Small GTP-Binding Protein and Its Cognate GAP Establish a Dynamic Spatial Polarity Axis to Control Directed Motility.

Published in:

PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000430

By:

Yong Zhang;
Franco, Michel;
Ducret, Adrien;
Mignot, Tâm

Publication type:

Article

Location Matters: How Spatial Positioning of Regulatory Proteins Produces Divergent Outcomes.

Published in:

PLoS Biology, 2010, v. 8, n. 3, p. 1, doi. 10.1371/journal.pbio.1000333

By:

Robinson, Richard

Publication type:

Article

Crystal Structure of the FeS ClusterContaining Nucleotide Excision Repair Helicase XPD.

Published in:

PLoS Biology, 2008, v. 6, n. 6, p. e149, doi. 10.1371/journal.pbio.0060149

By:

Wolski, Stefanie C.;
Kuper, Jochen;
Hänzelmann, Petra;
Truglio, James J.;
Croteau, Deborah L.;
Van Houten, Bennett;
Kisker, Caroline

Publication type:

Article

The Ticket to Transport.

Published in:

PLoS Biology, 2008, v. 6, n. 6, p. e144, doi. 10.1371/journal.pbio.0060144

By:

Hoff, Mary

Publication type:

Article

Host PrP Glycosylation: A Major Factor Determining the Outcome of Prion Infection.

Published in:

PLoS Biology, 2008, v. 6, n. 4, p. e100, doi. 10.1371/journal.pbio.0060100

By:

Tuzi, Nadia L.;
Cancellotti, Enrico;
Baybutt, Herbert;
Blackford, Lorraine;
Bradford, Barry;
Plinston, Chris;
Coghill, Anne;
Hart, Patricia;
Piccardo, Pedro;
Barron, Rona M.;
Manson, Jean C.

Publication type:

Article

A Competition between Stimulators and Antagonists of Upf Complex Recruitment Governs Human Nonsense-Mediated mRNA Decay.

Published in:

PLoS Biology, 2008, v. 6, n. 4, p. e111, doi. 10.1371/journal.pbio.0060111

By:

Singh, Guramrit;
Rebbapragada, Indrani;
Lykke-Andersen, Jens

Publication type:

Article

Structural and Chemical Profiling of the Human Cytosolic Sulfotransferases.

Published in:

PLoS Biology, 2007, v. 5, n. 5, p. e97, doi. 10.1371/journal.pbio.0050097

By:

Allali-Hassani, Abdellah;
Pan, Patricia W.;
Dombrovski, Ludmila;
Najmanovich, Rafael;
Tempel, Wolfram;
Dong, Aiping;
Loppnau, Peter;
Martin, Fernando;
Thonton, Janet;
Edwards, Aled M.;
Bochkarev, Alexey;
Plotnikov, Alexander N.;
Vedadi, Masoud;
Arrowsmith, Cheryl H.

Publication type:

Article

Characterizing a Key Player in Micro, but Not Small, RNA Interference.

Published in:

PLoS Biology, 2006, v. 4, n. 7, p. e238, doi. 10.1371/journal.pbio.0040238

By:

Robinson, Richard

Publication type:

Article

Shape of a Common Protein Module Suggests Role as Molecular Switch.

Published in:

PLoS Biology, 2006, v. 4, n. 7, p. e221, doi. 10.1371/journal.pbio.0040221

By:

Inman, Mason

Publication type:

Article

Polycombing Drosophila for Dynamic Developmental Footprints.

Published in:

PLoS Biology, 2006, v. 4, n. 6, p. e177, doi. 10.1371/journal.pbio.0040177

By:

Hill, Emma

Publication type:

Article

Selenoproteins - Tracing the Role of a Trace Element in Protein Function.

Published in:

PLoS Biology, 2005, v. 3, n. 12, p. e421, doi. 10.1371/journal.pbio.0030421

By:

Stadtman, Thressa C.

Publication type:

Article

Population Fitness and the Regulation of Escherichia coli Genes by Bacterial Viruses.

Published in:

PLoS Biology, 2005, v. 3, n. 6, p. 1, doi. 10.1371/journal.pbio.0030229

By:

Chen, Ying;
Golding, Ido;
Sawai, Satoshi;
Guo, Ling;
Cox, Edward C

Publication type:

Article

Behavioral dynamics of bacteriophage gene regulatory networks.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 5, p. 1, doi. 10.1142/S0219720022500214

By:

Melkus, Gatis;
Cerans, Karlis;
Freivalds, Karlis;
Lace, Lelde;
Zajakina, Darta;
Viksna, Juris

Publication type:

Article

PANDA: Predicting the change in proteins binding affinity upon mutations by finding a signal in primary structures.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 4, p. 1, doi. 10.1142/S0219720021500153

By:

Abbasi, Wajid Arshad;
Abbas, Syed Ali;
Andleeb, Saiqa

Publication type:

Article

ProBAPred: Inferring protein–protein binding affinity by incorporating protein sequence and structural features.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 4, p. N.PAG, doi. 10.1142/S0219720018500117

By:

Lu, Bangli;
Li, Chen;
Chen, Qingfeng;
Song, Jiangning

Publication type:

Article

Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 1, p. -1, doi. 10.1142/S0219720017400121

By:

Vishnevsky, Oleg V.;
Bocharnikov, Andrey V.;
Kolchanov, Nikolay A.

Publication type:

Article

STRUCTURE FLUCTUATIONS AND CONFORMATIONAL CHANGES IN PROTEIN BINDING.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 2, p. 1241002-1, doi. 10.1142/S0219720012410028

By:

RUVINSKY, ANATOLY M.;
KIRYS, TATSIANA;
TUZIKOV, ALEXANDER V.;
VAKSER, ILYA A.

Publication type:

Article

CSCORE:: A SIMPLE YET EFFECTIVE SCORING FUNCTION FOR PROTEIN-LIGAND BINDING AFFINITY PREDICTION USING MODIFIED CMAC LEARNING ARCHITECTURE.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 1, doi. 10.1142/S021972001100577X

By:

OUYANG, XUCHANG;
HANDOKO, STEPHANUS DANIEL;
KWOH, CHEE KEONG

Publication type:

Article

COMPARING MULTIPLE ChIP-SEQUENCING EXPERIMENTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 269, doi. 10.1142/S0219720011005483

By:

OZER, HATICE GULCIN;
HUANG, YI-WEN;
WU, JIEJUN;
PARVIN, JEFFREY D.;
HUANG, TIM HUI-MING;
HUANG, KUN

Publication type:

Article

RECENT ADVANCES ON STRUCTURAL BIOINFORMATICS, CELL MOTION SIMULATION, FUNCTIONAL MODULE IDENTIFICATION, COPY NUMBER VARIATION, AND PROTEASE SUBSTRATE PREDICTION AND SOME CRITICAL COMMENTS ON HMMER2.

Published in:: Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. v, doi. 10.1142/S0219720011005380
Publication type:: Article

GLOBAL METAL-ION BINDING PROTEIN FINGERPRINT:: A METHOD TO IDENTIFY MOTIF-LESS METAL-ION BINDING PROTEINS.

Published in:

Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 4, p. 717, doi. 10.1142/S0219720010004884

By:

MOHAN, ABHILASH;
ANISHETTY, SHARMILA;
GAUTAM, PENNATHUR

Publication type:

Article

PREDICTION OF DNA-BINDING RESIDUES FROM SEQUENCE FEATURES.

Published in:

Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 6, p. 1141, doi. 10.1142/S0219720006002387

By:

LIANGJIANG WANG;
BROWN, SUSAN J.

Publication type:

Article

RESIDUE CONSERVATION INFORMATION FOR GENERATING NEAR-NATIVE STRUCTURES IN PROTEIN–PROTEIN DOCKING.

Published in:

Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 4, p. 793, doi. 10.1142/S0219720006002223

By:

DUAN, YUHUA;
REDDY, BOOJALA V. B.;
KAZNESSIS, YIANNIS N.

Publication type:

Article

TRANSLATION REGULATION OF INTRON-CONTAINING GENES IN CHLOROPLASTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 4, p. 783, doi. 10.1142/S0219720006002235

By:

SELIVERSTOV, ALEXANDER;
LYUBETSKY, VASSILY

Publication type:

Article

BINDING MATRIX:: A NOVEL APPROACH FOR BINDING SITE RECOGNITION.

Published in:

Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 2, p. 289, doi. 10.1142/S0219720004000569

By:

Kim, Jan T.;
Gewehr, Jan E.;
Martinetz, Thomas

Publication type:

Article

cWINNOWER ALGORITHM FOR FINDING FUZZY DNA MOTIFS.

Published in:

Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 1, p. 47, doi. 10.1142/S0219720004000466

By:

LIANG, S.;
SAMANTA, M. P.;
BIEGEL, B. A.

Publication type:

Article

In Vitro Studies on Protein Binding of Polyhydroxybutyrate Isolated from Rhodopseudomonas palustris KRPR02.

Published in:

Macromolecular Symposia, 2022, v. 402, n. 1, p. 1, doi. 10.1002/masy.202100368

By:

Koyyati, Rama;
Kudle, Karunakar Rao;
Merugu, Ramchander;
Manthur Padigya, Pratp Rudra

Publication type:

Article

Nanostructured Polymeric Functional Micelles for Drug Delivery Applications.

Published in:

Macromolecular Symposia, 2013, v. 334, n. 1, p. 17, doi. 10.1002/masy.201300099

By:

Tripodo, G.;
Mandracchia, D.;
Dorati, R.;
Latrofa, A.;
Genta, I.;
Conti, B.

Publication type:

Article

Functionalized α‐Cyanostilbene Derivatives for Detection of Hypoxia or Proteostasis Imbalance in Live Cells.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 69, p. 1, doi. 10.1002/chem.202402630

By:

Zhao, Jiamin;
Zaheer, Maryam;
You, Jiawei;
Owyong, Tze Cin;
Giel, Marie‐Claire;
Praveen, Praveen;
Li, Wenyi;
Hou, Jianquan;
Hogan, Conor F.;
Zhao, Engui;
Ding, Siyang;
Hong, Yuning

Publication type:

Article

Cover Feature: Tetrel Bond Affects the Self‐Assembly of Acetylcholine and its Analogues and is an Ancillary Interaction in Protein Binding (Chem. Eur. J. 59/2024).

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 59, p. 1, doi. 10.1002/chem.202485902

By:

Daolio, Andrea;
Calabrese, Miriam;
Pizzi, Andrea;
Lo Iacono, Cristina;
Demitri, Nicola;
Beccaria, Roberta;
Gomila, Rosa M.;
Frontera, Antonio;
Resnati, Giuseppe

Publication type:

Article