Works about PROKARYOTIC genomes

Results: 477

Correction: Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

Restriction-Modification systems interplay causes avoidance of GATC site in prokaryotic genomes.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S0219720016410031

By:

Ershova, Anna;
Rusinov, Ivan;
Vasiliev, Mikhail;
Spirin, Sergey;
Karyagina, Anna

Publication type:

Article

Evolution of protein transport to the chloroplast envelope membranes.

Published in:

Photosynthesis Research, 2018, v. 138, n. 3, p. 315, doi. 10.1007/s11120-018-0540-x

By:

Day, Philip M.;
Theg, Steven M.

Publication type:

Article

Streptomyces xiangtanensis sp. nov., isolated from a manganese-contaminated soil.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 3, p. 297, doi. 10.1007/s10482-016-0797-z

By:

Mo, Ping;
Yu, Yi-Zun;
Zhao, Jia-Rong;
Gao, Jian

Publication type:

Article

Organic loading rate and food-to-microorganism ratio shape prokaryotic diversity in a demo-scale up-flow anaerobic sludge blanket reactor treating domestic wastewater.

Published in:

Antonie van Leeuwenhoek, 2013, v. 104, n. 6, p. 993, doi. 10.1007/s10482-013-0018-y

By:

Cardinali-Rezende, Juliana;
Araújo, Juliana C.;
Almeida, Paulo G. S.;
Chernicharo, Carlos A. L.;
Sanz, José L.;
Chartone-Souza, Edmar;
Nascimento, Andréa M. A.

Publication type:

Article

A global analysis of adaptive evolution of operons in cyanobacteria.

Published in:

Antonie van Leeuwenhoek, 2013, v. 103, n. 2, p. 331, doi. 10.1007/s10482-012-9813-0

By:

Memon, Danish;
Singh, Abhay;
Pakrasi, Himadri;
Wangikar, Pramod

Publication type:

Article

Constructed Wetlands Revisited: Microbial Diversity in the -omics Era.

Published in:

Microbial Ecology, 2017, v. 73, n. 3, p. 722, doi. 10.1007/s00248-016-0881-y

By:

Sánchez, Olga

Publication type:

Article

Substantial Variability of Multiple Microbial Communities Collected at Similar Acidic Mine Water Outlets.

Published in:

Microbial Ecology, 2016, v. 72, n. 1, p. 163, doi. 10.1007/s00248-016-0760-6

By:

Falteisek, Lukáš;
Duchoslav, Vojtěch;
Čepička, Ivan

Publication type:

Article

Role of Prokaryotic Biomasses and Activities in Carbon and Phosphorus Cycles at a Coastal, Thermohaline Front and in Offshore Waters (Gulf of Manfredonia, Southern Adriatic Sea).

Published in:

Microbial Ecology, 2014, v. 67, n. 3, p. 501, doi. 10.1007/s00248-013-0350-9

By:

Monticelli, L.;
Caruso, G.;
Decembrini, F.;
Caroppo, C.;
Fiesoletti, F.

Publication type:

Article

Release and Consumption of d-Amino Acids During Growth of Marine Prokaryotes.

Published in:

Microbial Ecology, 2014, v. 67, n. 1, p. 1, doi. 10.1007/s00248-013-0294-0

By:

Azúa, Iñigo;
Goiriena, Itziar;
Baña, Zuriñe;
Iriberri, Juan;
Unanue, Marian

Publication type:

Article

Simulation of two dimensional electrophoresis and tandem mass spectrometry for teaching proteomics.

Published in:

Biochemistry & Molecular Biology Education, 2012, v. 40, n. 6, p. 393, doi. 10.1002/bmb.20651

By:

Fisher, Amanda;
Sekera, Emily;
Payne, Jill;
Craig, Paul

Publication type:

Article

Horizontal Gene Transfer and Endophytes: An Implication for the Acquisition of Novel Traits.

Published in:

Plants (2223-7747), 2020, v. 9, n. 3, p. 305, doi. 10.3390/plants9030305

By:

Tiwari, Pragya;
Bae, Hanhong

Publication type:

Article

Haploid evolutionary constructor: New features and further challenges.

Published in:

In Silico Biology, 2012, v. 11, n. 3/4, p. 125, doi. 10.3233/isb-2012-0447

By:

Lashin, Sergey A.;
Matushkin, Yury G.

Publication type:

Article

Sideroblastic anemia: functional study of two novel missense mutations in ALAS2.

Published in:

Molecular Genetics & Genomic Medicine, 2016, v. 4, n. 3, p. 273, doi. 10.1002/mgg3.202

By:

Méndez, Manuel;
Moreno‐Carralero, María‐Isabel;
Morado‐Arias, Marta;
Fernández‐Jiménez, María‐Cristina;
Iglesia Iñigo, Silvia;
Morán‐Jiménez, María‐José

Publication type:

Article

Advances in biodiversity: metagenomics and the unveiling of biological dark matter.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0180-8

By:

Robbins, Robert J.;
Krishtalka, Leonard;
Wooley, John C.

Publication type:

Article

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 561, doi. 10.4056/sigs.4638348

By:

Garrity, George;
Banfield, Jill;
Eisen, Jonathan;
Lelie, Niels;
McMahon, Trina;
Rusch, Doug;
DeLong, Edward;
Moran, Mary;
Currie, Cameron;
Furhman, Jed;
Hallam, Steve;
Hugenholtz, Phil;
Moran, Nancy;
Nelson, Karen;
Roberts, Richard;
Stepanauskas, Ramunas

Publication type:

Article

Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.848410

By:

Boase, Katelyn;
González, Carolina;
Vergara, Eva;
Neira, Gonzalo;
Holmes, David;
Watkin, Elizabeth

Publication type:

Article

Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.849080

By:

Miura, Masahiro C.;
Nagata, Shohei;
Tamaki, Satoshi;
Tomita, Masaru;
Kanai, Akio

Publication type:

Article

Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes.

Published in:

Frontiers in Microbiology, 2022, p. 1, doi. 10.3389/fmicb.2021.822301

By:

Hiseni, Pranvera;
Snipen, Lars;
Wilson, Robert C.;
Furu, Kari;
Rudi, Knut

Publication type:

Article

Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.708782

By:

Haro-Moreno, Jose M.;
López-Pérez, Mario;
Rodriguez-Valera, Francisco

Publication type:

Article

Disease-specific loss of microbial cross-feeding interactions in the human gut.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42112-w

By:

Marcelino, Vanessa R.;
Welsh, Caitlin;
Diener, Christian;
Gulliver, Emily L.;
Rutten, Emily L.;
Young, Remy B.;
Giles, Edward M.;
Gibbons, Sean M.;
Greening, Chris;
Forster, Samuel C.

Publication type:

Article

Insertion sequence transposition inactivates CRISPR-Cas immunity.

Published in:

Nature Communications, 2023, n. 1, p. 1, doi. 10.1038/s41467-023-39964-7

By:

Sheng, Yong;
Wang, Hengyu;
Ou, Yixin;
Wu, Yingying;
Ding, Wei;
Tao, Meifeng;
Lin, Shuangjun;
Deng, Zixin;
Bai, Linquan;
Kang, Qianjin

Publication type:

Article

Alternative genetic code for amino acids and transfer RNA revisited.

Published in:

Biomolecular Concepts, 2013, v. 4, n. 3, p. 309, doi. 10.1515/bmc-2013-0002

By:

Hamashima, Kiyofumi;
Kanai, Akio

Publication type:

Article

Prokaryotic expression and immunogenicity in rabbit of Ebola virus VP40 matrix protein.

Published in:

Indian Journal of Animal Research, 2018, v. 52, n. 1, p. 121, doi. 10.18805/ijar.v0iOF.8477

By:

Yinbiao Wang;
Xiao Liu;
Xingdong Yang;
Ling Tao;
Pengwei Xu;
Xia Gao;
Huijun Li;
Zhongzhi Yang;
Weidong Wu

Publication type:

Article

Investigating the nature of prokaryotic genomic island locations within a genome.

Published in:

PLoS ONE, 2024, v. 19, n. 5, p. 1, doi. 10.1371/journal.pone.0301172

By:

Aldaihani, Reem;
Heath, Lenwood S.

Publication type:

Article

The effect of the genomic GC content bias of prokaryotic organisms on the secondary structures of their proteins.

Published in:

PLoS ONE, 2023, v. 18, n. 5, p. 1, doi. 10.1371/journal.pone.0285201

By:

Barceló-Antemate, Diana;
Fontove-Herrera, Fernando;
Santos, Walter;
Merino, Enrique

Publication type:

Article

Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer.

Published in:

Microbial Biotechnology, 2013, v. 6, n. 2, p. 150, doi. 10.1111/1751-7915.12006

By:

Ramos, Rommel Thiago Jucá;
Carneiro, Adriana Ribeiro;
Soares, Siomar de Castro;
Santos, Anderson Rodrigues dos;
Almeida, Sintia;
Guimarães, Luis;
Figueira, Flávia;
Barbosa, Eudes;
Tauch, Andreas;
Azevedo, Vasco;
Silva, Artur

Publication type:

Article

The application of Tet repressor in prokaryotic gene regulation and expression.

Published in:

Microbial Biotechnology, 2008, v. 1, n. 1, p. 2, doi. 10.1111/j.1751-7915.2007.00001.x

By:

Bertram, Ralph;
Hillen, Wolfgang

Publication type:

Article

Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08029-8

By:

Lueder, Matthew R.;
Cer, Regina Z.;
Patrick, Miles;
Voegtly, Logan J.;
Long, Kyle A.;
Rice, Gregory K.;
Bishop-Lilly, Kimberly A.

Publication type:

Article

Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 5, p. 1, doi. 10.15252/msb.20209880

By:

Smyshlyaev, Georgy;
Bateman, Alex;
Barabas, Orsolya

Publication type:

Article

SALT RESISTANCE MECHANISM OF HALOTOLERANT/HALOPHILIC PROKARYOTIC DNases AND HALOTOLERANCE INDUCTION FOR BOVINE DNaseI (Biochemistry).

Published in:

Biologija, 2017, v. 63, p. 78

By:

Alzbutas, Gediminas

Publication type:

Article

Mammalian Hbs1L deficiency causes congenital anomalies and developmental delay associated with Pelota depletion and 80S monosome accumulation.

Published in:

PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007917

By:

O’Connell, Amy E.;
Gerashchenko, Maxim V.;
O’Donohue, Marie-Francoise;
Rosen, Samantha M.;
Huntzinger, Eric;
Gleeson, Diane;
Galli, Antonella;
Ryder, Edward;
Cao, Siqi;
Murphy, Quinn;
Kazerounian, Shideh;
Morton, Sarah U.;
Schmitz-Abe, Klaus;
Gladyshev, Vadim N.;
Gleizes, Pierre-Emmanuel;
Séraphin, Bertrand;
Agrawal, Pankaj B.

Publication type:

Article

Translational arrest by a prokaryotic signal recognition particle is mediated by RNA interactions.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 767, doi. 10.1038/nsmb.3086

By:

Beckert, Bertrand;
Kedrov, Alexej;
Sohmen, Daniel;
Kempf, Georg;
Wild, Klemens;
Sinning, Irmgard;
Stahlberg, Henning;
Wilson, Daniel N;
Beckmann, Roland

Publication type:

Article

Conformational changes required for H<sup>+</sup>/Cl<sup>−</sup> exchange mediated by a CLC transporter.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 5, p. 456, doi. 10.1038/nsmb.2814

By:

Basilio, Daniel;
Noack, Kristin;
Picollo, Alessandra;
Accardi, Alessio

Publication type:

Article

Breaking symmetry in SMCs.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 246, doi. 10.1038/nsmb.2525

By:

Upton, Amy L;
Sherratt, David J

Publication type:

Article

An asymmetric SMC-kleisin bridge in prokaryotic condensin.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 371, doi. 10.1038/nsmb.2488

By:

Bürmann, Frank;
Shin, Ho-Chul;
Basquin, Jérôme;
Soh, Young-Min;
Giménez-Oya, Victor;
Kim, Yeon-Gil;
Oh, Byung-Ha;
Gruber, Stephan

Publication type:

Article

Twenty years of bacterial genome sequencing.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 12, p. 787, doi. 10.1038/nrmicro3565

By:

Loman, Nicholas J.;
Pallen, Mark J.

Publication type:

Article

Bacterial genetics: A CRISPR sense of self.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 6, p. 328, doi. 10.1038/nrmicro3498

By:

Attar, Naomi

Publication type:

Article

The hybrid nature of the Eukaryota and a consilient view of life on Earth.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 6, p. 449, doi. 10.1038/nrmicro3271

By:

McInerney, James O.;
O'Connell, Mary J.;
Pisani, Davide

Publication type:

Article

CRISPR-Cas systems: beyond adaptive immunity.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 5, p. 317, doi. 10.1038/nrmicro3241

By:

Westra, Edze R.;
Buckling, Angus;
Fineran, Peter C.

Publication type:

Article

Structural and mechanistic insights into prokaryotic energy-coupling factor transporters.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 2, p. 79, doi. 10.1038/nrmicro3175

By:

Slotboom, Dirk J.

Publication type:

Article

TnpPred: AWeb Service for the Robust Prediction of Prokaryotic Transposases.

Published in:

Comparative & Functional Genomics, 2012, p. 1, doi. 10.1155/2012/678761

By:

Riadi, Gonzalo;
Medina-Moenne, Cristobal;
Holmes, David S.

Publication type:

Article

How Many Factors Influence Genomic GC Content Among Prokaryotes?

Published in:

Journal of Molecular Evolution, 2023, v. 91, n. 1, p. 6, doi. 10.1007/s00239-022-10077-x

By:

Musto, Héctor

Publication type:

Article

Translation Comes First: Ancient and Convergent Selection of Codon Usage Bias Across Prokaryotic Genomes.

Published in:

Journal of Molecular Evolution, 2022, v. 90, n. 6, p. 438, doi. 10.1007/s00239-022-10074-0

By:

González-Serrano, Francisco;
Abreu-Goodger, Cei;
Delaye, Luis

Publication type:

Article

The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.

Published in:

Journal of Molecular Evolution, 2015, v. 80, n. 5/6, p. 244, doi. 10.1007/s00239-015-9679-7

By:

Koonin, Eugene

Publication type:

Article

Identification of Xenologs and Their Characteristic Low Expression Levels in the Cyanobacterium Synechococcus elongatus.

Published in:

Journal of Molecular Evolution, 2015, v. 80, n. 5/6, p. 292, doi. 10.1007/s00239-015-9684-x

By:

Álvarez-Canales, Gilberto;
Arellano-Álvarez, Guadalupe;
González-Domenech, Carmen;
Cruz, Fernando;
Moya, Andrés;
Delaye, Luis

Publication type:

Article

Extreme Conservation of the psaA/ psaB Intercistronic Spacer Reveals a Translational Motif Coincident with the Evolution of Land Plants.

Published in:

Journal of Molecular Evolution, 2012, v. 75, n. 5/6, p. 184, doi. 10.1007/s00239-012-9526-z

By:

Peredo, Elena;
Les, Donald;
King, Ursula;
Benoit, Lori

Publication type:

Article

CRISPRminer is a knowledge base for exploring CRISPR-Cas systems in microbe and phage interactions.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0184-6

By:

Zhang, Fan;
Zhao, Shijia;
Ren, Chunyan;
Zhu, Yuwei;
Zhou, Haibin;
Lai, Yongkui;
Zhou, Fengxia;
Jia, Yuqiang;
Zheng, Kangjie;
Huang, Zhiwei

Publication type:

Article

Genome editing in barley -- its application in gene function studies and modifications of useful traits.

Published in:

Biotechnologia, 2018, v. 99, n. 3, p. 234

By:

GASPARIS, SEBASTIAN;
KAŁA, MACIEJ;
PRZYBOROWSKI, MATEUSZ;
ORCZYK, WACŁAW;
NADOLSKA-ORCZYK, ANNA

Publication type:

Article

Characterization and functional analysis of the serpin-10 gene from oak silkworm, Antheraea pernyi (Lepidoptera: Saturniidae).

Published in:

European Journal of Entomology, 2017, v. 114, p. 430, doi. 10.14411/eje.2017.055

By:

KAUSAR, SAIMA;
CEN QIAN;
ABBAS, MUHAMMAD NADEEM;
BAO-JIAN ZHU;
YA LIU;
LEI WANG;
GUO-QING WEI;
YU SUN;
CHAO-LIANG LIU

Publication type:

Article