Works matching DE "PROKARYOTIC genomes"

Results: 479

Spatial entropy drives the maintenance and dissemination of transferable plasmids.

Published in:

Molecular Systems Biology, 2025, v. 21, n. 7, p. 856, doi. 10.1038/s44320-025-00110-8

By:

Xue, Wenzhi;
Hong, Juken;
Zhao, Runmeng;
Yao, Huaxiong;
Zhang, Yi;
Dai, Zhuojun;
Wang, Teng

Publication type:

Article

Twenty years of bacterial genome sequencing.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 12, p. 787, doi. 10.1038/nrmicro3565

By:

Loman, Nicholas J.;
Pallen, Mark J.

Publication type:

Article

Bacterial genetics: A CRISPR sense of self.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 6, p. 328, doi. 10.1038/nrmicro3498

By:

Attar, Naomi

Publication type:

Article

The hybrid nature of the Eukaryota and a consilient view of life on Earth.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 6, p. 449, doi. 10.1038/nrmicro3271

By:

McInerney, James O.;
O'Connell, Mary J.;
Pisani, Davide

Publication type:

Article

CRISPR-Cas systems: beyond adaptive immunity.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 5, p. 317, doi. 10.1038/nrmicro3241

By:

Westra, Edze R.;
Buckling, Angus;
Fineran, Peter C.

Publication type:

Article

Structural and mechanistic insights into prokaryotic energy-coupling factor transporters.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 2, p. 79, doi. 10.1038/nrmicro3175

By:

Slotboom, Dirk J.

Publication type:

Article

Systematic Association of Genes to Phenotypes by Genome and Literature Mining.

Published in:

PLoS Biology, 2005, v. 3, n. 4, p. 1, doi. 10.1371/journal.pbio.0030134

By:

Korbel, Jan O;
Doerks, Tobias;
Jensen, Lars J;
Perez-Iratxeta, Carolina;
Kaczanowski, Szymon;
Hooper, Sean D;
Andrade, Miguel A;
Bork, Peer

Publication type:

Article

Evolution of protein transport to the chloroplast envelope membranes.

Published in:

Photosynthesis Research, 2018, v. 138, n. 3, p. 315, doi. 10.1007/s11120-018-0540-x

By:

Day, Philip M.;
Theg, Steven M.

Publication type:

Article

Functional role of β domain in the Thermoanaerobacter tengcongensis glucoamylase.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 5, p. 2091, doi. 10.1007/s00253-013-5051-2

By:

Li, Zilong;
Wei, Pingying;
Cheng, Hairong;
He, Peng;
Wang, Qinhong;
Jiang, Ning

Publication type:

Article

A method for evaluating the host range of bacteriophages using phages fluorescently labeled with 5-ethynyl-2′-deoxyuridine (EdU).

Published in:

Applied Microbiology & Biotechnology, 2012, v. 95, n. 3, p. 777, doi. 10.1007/s00253-012-4174-1

By:

Ohno, Sayaka;
Okano, Hironori;
Tanji, Yasunori;
Ohashi, Akiyoshi;
Watanabe, Kazuya;
Takai, Ken;
Imachi, Hiroyuki

Publication type:

Article

Expression of the soybean allergenic protein P34 in Escherichia coli and its indirect ELISA detection method.

Published in:

Applied Microbiology & Biotechnology, 2012, v. 94, n. 5, p. 1337, doi. 10.1007/s00253-012-4006-3

By:

Liu, Bin;
Teng, Da;
Wang, Xiumin;
Yang, Yalin;
Wang, Jianhua

Publication type:

Article

A unified compendium of prokaryotic and viral genomes from over 300 anaerobic digestion microbiomes.

Published in:

Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-023-00545-2

By:

Centurion, Victor Borin;
Rossi, Alessandro;
Orellana, Esteban;
Ghiotto, Gabriele;
Kakuk, Balázs;
Morlino, Maria Silvia;
Basile, Arianna;
Zampieri, Guido;
Treu, Laura;
Campanaro, Stefano

Publication type:

Article

The evolutionary landscape of prokaryotic chromosome/plasmid balance.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07167-5

By:

Xue, Wenzhi;
Hong, Juken;
Wang, Teng

Publication type:

Article

Advancing biotechnology with CRISPR/Cas9: recent applications and patent landscape.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 467, doi. 10.1007/s10295-017-2000-6

By:

Ferreira, Raphael;
David, Florian;
Nielsen, Jens

Publication type:

Article

Distribution and coexistence patterns of phytoplankton in subtropical shallow lakes and the role of niche-based and spatial processes.

Published in:

Hydrobiologia, 2018, v. 814, n. 1, p. 233, doi. 10.1007/s10750-018-3539-6

By:

Ribeiro, Karine Felix;
da Rocha, Cacinele Mariana;
de Castro, Dilton;
Rodrigues, Lucia Ribeiro;
Crossetti, Luciane Oliveira

Publication type:

Article

Multiomic analysis to identify host and microbiome contributions to digestibility in beef cattle.

Published in:

2024

By:

O’Hara, Eóin;
Dubois, Megan;
Ribeiro, Gabriel O.;
Gruninger, Robert J.

Publication type:

Abstract

Community dynamics of prokaryotic and eukaryotic microbes in an estuary reservoir.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06966

By:

Zhen Sun;
Guoping Li;
Chengwei Wang;
Yuhang Jing;
Yiping Zhu;
Shumin Zhang;
Yan Liu

Publication type:

Article

Advances in biodiversity: metagenomics and the unveiling of biological dark matter.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0180-8

By:

Robbins, Robert J.;
Krishtalka, Leonard;
Wooley, John C.

Publication type:

Article

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 561, doi. 10.4056/sigs.4638348

By:

Garrity, George;
Banfield, Jill;
Eisen, Jonathan;
Lelie, Niels;
McMahon, Trina;
Rusch, Doug;
DeLong, Edward;
Moran, Mary;
Currie, Cameron;
Furhman, Jed;
Hallam, Steve;
Hugenholtz, Phil;
Moran, Nancy;
Nelson, Karen;
Roberts, Richard;
Stepanauskas, Ramunas

Publication type:

Article

GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac007

By:

Poudel, Ravin;
Rodriguez, Lidimarie Trujillo;
Reisch, Christopher R;
Rivers, Adam R

Publication type:

Article

Analyses of Old "Prokaryotic" Proteins Indicate Functional Diversification in Arabidopsis and Oryza sativa.

Published in:

Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00304

By:

Singh, Anupama;
Jethva, Minesh;
Singla-Pareek, Sneh L.;
Pareek, Ashwani;
Kushwaha, Hemant R.;
Chaluvadi, Srinivasa Rao;
Feldmann, Kenneth A.

Publication type:

Article

Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus.

Published in:

Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00406

By:

Creason, Allison L.;
Davis, Edward W.;
Putnam, Melodie L.;
Vandeputte, Olivier M.;
Chang, Jeff H.

Publication type:

Article

Acyl CoA binding proteins are required for cuticle formation and plant responses to microbes.

Published in:

Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00224

By:

Ye Xia;
Keshun Yu;
Qing-ming Gao;
Wilson, Ella V.;
Navarre, Duroy;
Kachroo, Pradeep;
Kachroo, Aardra

Publication type:

Article

RIGD: A Database for Intronless Genes in the Rosaceae.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.00868

By:

Chen, Tianzhe;
Meng, Dandan;
Liu, Xin;
Cheng, Xi;
Wang, Han;
Jin, Qing;
Xu, Xiaoyu;
Cao, Yunpeng;
Cai, Yongping

Publication type:

Article

Higher Order Organization of the mtDNA: Beyond Mitochondrial Transcription Factor A.

Published in:

Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01285

By:

Mishmar, Dan;
Levin, Rotem;
Naeem, Mansur M.;
Sondheimer, Neal

Publication type:

Article

Predicting climate-change impacts on the global glacier-fed stream microbiome.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-56426-4

By:

Bourquin, Massimo;
Peter, Hannes;
Michoud, Grégoire;
Busi, Susheel Bhanu;
Kohler, Tyler J.;
Robison, Andrew L.;
Styllas, Mike;
Ezzat, Leïla;
Geers, Aileen U.;
Huss, Matthias;
Fodelianakis, Stilianos;
Styllas, Michael;
Schön, Martina;
Tolosano, Matteo;
de Staercke, Vincent;
Battin, Tom J.

Publication type:

Article

Global diversity and ecological functions of viruses inhabiting oil reservoirs.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51101-6

By:

An, Liyun;
Liu, Xinwu;
Wang, Jianwei;
Xu, Jinbo;
Chen, Xiaoli;
Liu, Xiaonan;
Hu, Bingxin;
Nie, Yong;
Wu, Xiao-Lei

Publication type:

Article

Prediction of DNA sequences using adaptative neuro-fuzzy inference system.

Published in:

International Journal of Biomathematics, 2018, v. 11, n. 4, p. -1, doi. 10.1142/S179352451850047X

By:

Mihi, Assia;
Boucenna, Nourredine;
Benmahammmed, Kheir

Publication type:

Article

Molecular Characterization of Prokaryotic Communities Associated with Lonar Crater Basalts.

Published in:

Geomicrobiology Journal, 2014, v. 31, n. 6, p. 519, doi. 10.1080/01490451.2013.849314

By:

Antony, Chakkiath Paul;
Shimpi, Gaurav G.;
Cockell, Charles S.;
Patole, Milind S.;
Shouche, Yogesh S.

Publication type:

Article

Prokaryotically and eukaryotically expressed interleukin-24 induces breast cancer growth suppression via activation of apoptosis and inhibition of tumor angiogenesis.

Published in:

Molecular Medicine Reports, 2015, v. 11, n. 5, p. 3673, doi. 10.3892/mmr.2014.3136

By:

SHAOHUA WEI;
HUA CAO;
XIAOYAN ZHOU;
HAORONG WU;
JICHENG YANG

Publication type:

Article

Does the Human Gut Virome Contribute to Host Health or Disease?

Published in:

Viruses (1999-4915), 2023, v. 15, n. 11, p. 2271, doi. 10.3390/v15112271

By:

Pavia, Grazia;
Marascio, Nadia;
Matera, Giovanni;
Quirino, Angela

Publication type:

Article

The Characteristics and Genome Analysis of vB_AviM_AVP, the First Phage Infecting Aerococcus viridans.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 2, p. 104, doi. 10.3390/v11020104

By:

Xi, Hengyu;
Dai, Jiaxin;
Tong, Yigang;
Cheng, Mengjun;
Zhao, Feiyang;
Fan, Hang;
Li, Xinwei;
Cai, Ruopeng;
Ji, Yalu;
Sun, Changjiang;
Feng, Xin;
Lei, Liancheng;
Rahman, Sadeeq ur;
Han, Wenyu;
Gu, Jingmin

Publication type:

Article

Insights into the Human Virome Using CRISPR Spacers from Microbiomes.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 9, p. 479, doi. 10.3390/v10090479

By:

Hidalgo-Cantabrana, Claudio;
Sanozky-Dawes, Rosemary;
Barrangou, Rodolphe

Publication type:

Article

Comparison of Oral Microbe Quantities from Tongue Samples and Subgingival Pockets.

Published in:

International Journal of Dentistry, 2018, p. 1, doi. 10.1155/2018/2048390

By:

Göhler, André;
Samietz, Stefanie;
Schmidt, Carsten Oliver;
Kocher, Thomas;
Steinmetz, Ivo;
Holtfreter, Birte

Publication type:

Article

Prokaryotic expression and immunogenicity in rabbit of Ebola virus VP40 matrix protein.

Published in:

Indian Journal of Animal Research, 2018, v. 52, n. 1, p. 121, doi. 10.18805/ijar.v0iOF.8477

By:

Yinbiao Wang;
Xiao Liu;
Xingdong Yang;
Ling Tao;
Pengwei Xu;
Xia Gao;
Huijun Li;
Zhongzhi Yang;
Weidong Wu

Publication type:

Article

Recombinant expression and comparative bioactivity of tongue sole insulin‐like growth factor (IGF)‐1 and IGF‐2 in <italic>Pichia pastoris</italic>.

Published in:

Aquaculture Research, 2018, v. 49, n. 6, p. 2193, doi. 10.1111/are.13675

By:

Xu, Yongjiang;
Wang, Bin;
Liu, Xuezhou;
Shi, Bao;
Li, Bin

Publication type:

Article

EXPRESSION OF NUCLEOCAPSID PROTEIN OF CAPSICUM CHLOROSIS VIRUS IN A PROKARYOTIC SYSTEM AND ITS APPLICATION IN VIRUS DETECTION.

Published in:

Journal of Plant Pathology, 2014, v. 96, n. 2, p. 381

By:

Rao, X.;
Li, Y.;
Wu, Z.;
Liu, Y.;
Wang, W.

Publication type:

Article

Enhanced 5-methylcytosine detection in singlemolecule, real-time sequencing via Tet1 oxidation.

Published in:

BMC Biology, 2012, v. 11, n. 1, p. 1, doi. 10.1186/1741-7007-11-4

By:

Clark, Tyson A.;
Lu, Xingyu;
Luong, Khai;
Dai, Qing;
Boitano, Matthew;
Turner, Stephen W.;
He, Chuan;
Korlach, Jonas

Publication type:

Article

Linking high GC content to the repair of double strand breaks in prokaryotic genomes.

Published in:

PLoS Genetics, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pgen.1008493

By:

Weissman, Jake L.;
Fagan, William F.;
Johnson, Philip L. F.

Publication type:

Article

Mammalian Hbs1L deficiency causes congenital anomalies and developmental delay associated with Pelota depletion and 80S monosome accumulation.

Published in:

PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007917

By:

O’Connell, Amy E.;
Gerashchenko, Maxim V.;
O’Donohue, Marie-Francoise;
Rosen, Samantha M.;
Huntzinger, Eric;
Gleeson, Diane;
Galli, Antonella;
Ryder, Edward;
Cao, Siqi;
Murphy, Quinn;
Kazerounian, Shideh;
Morton, Sarah U.;
Schmitz-Abe, Klaus;
Gladyshev, Vadim N.;
Gleizes, Pierre-Emmanuel;
Séraphin, Bertrand;
Agrawal, Pankaj B.

Publication type:

Article

Rep-PCR Identifies Both Inter- and Intra-Specific Mitochondrial Genome Differences in Carthamus.

Published in:

Plant Molecular Biology Reporter, 2013, v. 31, n. 5, p. 1150, doi. 10.1007/s11105-013-0580-5

By:

Viswanathaswamy, Dinesh;
Nizampatnam, Narasimha

Publication type:

Article

Isolation and Characterization of a Lipid Transfer Protein Gene ( BplLTP1) from Betula platyphylla.

Published in:

Plant Molecular Biology Reporter, 2013, v. 31, n. 4, p. 991, doi. 10.1007/s11105-013-0571-6

By:

Guan, Minxiao;
Chai, Ruihai;
Kong, Xue;
Liu, Xuemei

Publication type:

Article

Cloning, Characterization and Functional Analysis of a Phenylalanine Ammonia-lyase Gene ( FtPAL) from Fagopyrum tataricum Gaertn.

Published in:

Plant Molecular Biology Reporter, 2012, v. 30, n. 5, p. 1172, doi. 10.1007/s11105-012-0431-9

By:

Li, Cheng;
Bai, Yue;
Chen, Hui;
Zhao, Hai;
Shao, Ji;
Wu, Qi

Publication type:

Article

Changes in prokaryotic community composition accompanying a pronounced temperature shift of a shallow marine thermal brine pool (Panarea Island, Italy).

Published in:

Extremophiles, 2015, v. 19, n. 3, p. 547, doi. 10.1007/s00792-015-0737-2

By:

Gugliandolo, Concetta;
Lentini, Valeria;
Bunk, Boyke;
Overmann, Jörg;
Italiano, Francesco;
Maugeri, Teresa

Publication type:

Article

The prokaryotic community of a historically mining-impacted tropical stream sediment is as diverse as that from a pristine stream sediment.

Published in:

Extremophiles, 2013, v. 17, n. 2, p. 301, doi. 10.1007/s00792-013-0517-9

By:

Reis, Mariana;
Barbosa, Francisco;
Chartone-Souza, Edmar;
Nascimento, Andréa

Publication type:

Article

Long-term and legacy effects of manure application on soil microbial community composition.

Published in:

Biology & Fertility of Soils, 2018, v. 54, n. 2, p. 269, doi. 10.1007/s00374-017-1257-2

By:

Zhang, Yuting;
Hao, Xiying;
Alexander, Trevor W.;
Thomas, Ben W.;
Shi, Xiaojun;
Lupwayi, Newton Z.

Publication type:

Article

Generalizations of the genomic rank distance to indels.

Published in:

Bioinformatics, 2023, v. 39, n. 3, p. 1, doi. 10.1093/bioinformatics/btad087

By:

Zanetti, João Paulo Pereira;
Oliveira, Lucas Peres;
Chindelevitch, Leonid;
Meidanis, João

Publication type:

Article

BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence.

Published in:

Bioinformatics, 2021, v. 37, n. 17, p. 2750, doi. 10.1093/bioinformatics/btab082

By:

Hepp, Benjamin;
Cunha, Violette Da;
Lorieux, Florence;
Oberto, Jacques

Publication type:

Article

panRGP: a pangenome-based method to predict genomic islands and explore their diversity.

Published in:

Bioinformatics, 2020, v. 36, p. i651, doi. 10.1093/bioinformatics/btaa792

By:

Bazin, Adelme;
Gautreau, Guillaume;
Médigue, Claudine;
Vallenet, David;
Calteau, Alexandra

Publication type:

Article

Benchmark of software tools for prokaryotic chromosomal interaction domain identification.

Published in:

Bioinformatics, 2020, v. 36, n. 17, p. 4560, doi. 10.1093/bioinformatics/btaa555

By:

Magnitov, Mikhail D;
Kuznetsova, Veronika S;
Ulianov, Sergey V;
Razin, Sergey V;
Tyakht, Alexander V

Publication type:

Article