Works matching DE "PROKARYOTIC genomes"
Results: 476
Distribution patterns and environmental correlates of Thaumarchaeota abundance in six deep subalpine lakes.
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- Aquatic Sciences, 2016, v. 78, n. 2, p. 215, doi. 10.1007/s00027-015-0418-3
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The evolutionary landscape of prokaryotic chromosome/plasmid balance.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07167-5
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Advancing biotechnology with CRISPR/Cas9: recent applications and patent landscape.
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- Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 467, doi. 10.1007/s10295-017-2000-6
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ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11348
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LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.10906
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Properties of a cryptic lysyl oxidase from haloarchaeon Haloterrigena turkmenica.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.6691
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Genome editing in barley -- its application in gene function studies and modifications of useful traits.
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- Biotechnologia, 2018, v. 99, n. 3, p. 234
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The NEREA Augmented Observatory: an integrative approach to marine coastal ecology.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03787-y
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Recovery of 1887 metagenome-assembled genomes from the South China Sea.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03050-4
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Phylogenetic and functional prokaryotic diversity in the Hoito-Gol mesothermal mineral spring (Eastern Sayan Mountains, Buryat Republic).
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- Microbiology (00262617), 2016, v. 85, n. 5, p. 592, doi. 10.1134/S0026261716050076
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Multiple lateral transfers and duplications of genes as sources of diversity of α-L-rhamnosidases in Clostridium methylpentosum DSM5476.
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- Microbiology (00262617), 2013, v. 82, n. 4, p. 415, doi. 10.1134/S0026261713040085
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The Transcriptional Network Structure of a Myeloid Cell: A Computational Approach.
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- International Journal of Genomics, 2017, p. 1, doi. 10.1155/2017/4858173
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DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes.
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- Scientific Reports, 2024, v. 12, n. 1, p. 1, doi. 10.1038/s41598-024-59487-5
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DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-59487-5
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- Article
Evolution of Repetitive Elements, Their Roles in Homeostasis and Human Disease, and Potential Therapeutic Applications.
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- Biomolecules (2218-273X), 2024, v. 14, n. 10, p. 1250, doi. 10.3390/biom14101250
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- Article
Prokaryotic Genome Expansion Is Facilitated by Phages and Plasmids but Impaired by CRISPR.
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- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02254
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Limited Cross-Complementation Between Haloferax volcanii PilB1-C1 and PilB3-C3 Paralogs.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00700
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Distributions of Extracellular Peptidases Across Prokaryotic Genomes Reflect Phylogeny and Habitat.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00413
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Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2018.03329
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Biases in Prokaryotic Community Amplicon Sequencing Affected by DNA Extraction Methods in Both Saline and Non-saline Soil.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01796
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Characterization of CRISPR-Cas Systems in Clinical <italic>Klebsiella pneumoniae</italic> Isolates Uncovers Its Potential Association With Antibiotic Susceptibility.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01595
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Functional gene networks based on the gene neighborhood in metagenomes.
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- Animal Cells & Systems, 2017, v. 21, n. 5, p. 301, doi. 10.1080/19768354.2017.1382388
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Patterns and drivers of bacterial α- and β-diversity across vertical profiles from surface to subsurface sediments.
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- Environmental Microbiology Reports, 2013, v. 5, n. 5, p. 731, doi. 10.1111/1758-2229.12075
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A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation.
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- BMC Research Notes, 2012, v. 5, n. 1, p. 80, doi. 10.1186/1756-0500-5-80
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- Article
Effects of silver nanoparticles on zebrafish ( Danio rerio) and Escherichia coli (ATCC 25922): A comparison of toxicity based on total surface area versus mass concentration of particles in a model eukaryotic and prokaryotic system.
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- Environmental Toxicology & Chemistry, 2012, v. 31, n. 8, p. 1793, doi. 10.1002/etc.1881
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Toward the comprehensive understanding of the gut ecosystem via metabolomics-based integrated omics approach.
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- Seminars in Immunopathology, 2015, v. 37, n. 1, p. 5, doi. 10.1007/s00281-014-0456-2
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EXPRESSION OF NUCLEOCAPSID PROTEIN OF CAPSICUM CHLOROSIS VIRUS IN A PROKARYOTIC SYSTEM AND ITS APPLICATION IN VIRUS DETECTION.
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- Journal of Plant Pathology, 2014, v. 96, n. 2, p. 381
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Simultaneous generation of many RNA-seq libraries in a single reaction.
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- Nature Methods, 2015, v. 12, n. 4, p. 323, doi. 10.1038/nmeth.3313
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Next-generation CRISPRs.
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- Nature Methods, 2015, v. 12, n. 1, p. 36, doi. 10.1038/nmeth.3237
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Accurate and universal delineation of prokaryotic species.
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- Nature Methods, 2013, v. 10, n. 9, p. 881, doi. 10.1038/nmeth.2575
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Quantitative estimation of activity and quality for collections of functional genetic elements.
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- Nature Methods, 2013, v. 10, n. 4, p. 347, doi. 10.1038/nmeth.2403
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ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.
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- BMC Genomics, 2018, v. 19, p. 7, doi. 10.1186/s12864-017-4327-9
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Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis.
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- BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4435-1
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Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathway.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3978-x
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Relating genomic characteristics to environmental preferences and ubiquity in different microbial taxa.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3888-y
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Novel gene sets improve set-level classification of prokaryotic gene expression data.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0786-7
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leBIBI<sup>QBPP</sup>: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0692-z
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YOC, A new strategy for pairwise alignment of collinear genomes.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0530-3
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A fast weak motif-finding algorithm based on community detection in graphs.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-227
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Linking high GC content to the repair of double strand breaks in prokaryotic genomes.
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- PLoS Genetics, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pgen.1008493
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Mammalian Hbs1L deficiency causes congenital anomalies and developmental delay associated with Pelota depletion and 80S monosome accumulation.
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- PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007917
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CRISPR/Cas9: Nature's gift to prokaryotes and an auspicious tool in genome editing.
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- Journal of Basic Microbiology, 2020, v. 60, n. 2, p. 91, doi. 10.1002/jobm.201900420
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The Master Quorum-Sensing Regulator OpaR is Activated Indirectly by H-NS in Vibrio parahaemolyticus.
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- Current Microbiology, 2016, v. 73, n. 1, p. 71, doi. 10.1007/s00284-016-1018-8
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Diversity of Prokaryotic Community at a Shallow Marine Hydrothermal Site Elucidated by Illumina Sequencing Technology.
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- Current Microbiology, 2014, v. 69, n. 4, p. 457, doi. 10.1007/s00284-014-0609-5
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Expansion of the "Sodium World" through Evolutionary Time and Taxonomic Space.
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- Biochemistry (00062979), 2020, v. 85, n. 12/13, p. 1518, doi. 10.1134/S0006297920120056
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Comparison of Methods of Detection of Exceptional Sequences in Prokaryotic Genomes.
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- Biochemistry (00062979), 2018, v. 83, n. 2, p. 129, doi. 10.1134/S0006297918020050
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Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.
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- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0856-x
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Nanoarchitecture and dynamics of the mouse enteric glycocalyx examined by freeze-etching electron tomography and intravital microscopy.
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- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-019-0735-5
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CRISPRminer is a knowledge base for exploring CRISPR-Cas systems in microbe and phage interactions.
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- Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0184-6
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Gene Coexpression as Hebbian Learning in Prokaryotic Genomes.
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- Bulletin of Mathematical Biology, 2013, v. 75, n. 12, p. 2431, doi. 10.1007/s11538-013-9900-z
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