Works matching DE "PROKARYOTE genetics"

Results: 81

ISQuest: finding insertion sequences in prokaryotic sequence fragment data.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3406, doi. 10.1093/bioinformatics/btv388

By:

Biswas, Abhishek;
Gauthier, David T.;
Ranjan, Desh;
Zubair, Mohammad

Publication type:

Article

Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life.

Published in:

Genes, 2017, v. 8, n. 10, p. 248, doi. 10.3390/genes8100248

By:

Rancurel, Corinne;
Legrand, Ludovic;
Danchin, Etienne G. J.

Publication type:

Article

Expression, Functional Characterization and X-ray Analysis of HosA, A Member of MarR Family of Transcription Regulator from Uropathogenic Escherichia coli.

Published in:

Protein Journal, 2016, v. 35, n. 4, p. 269, doi. 10.1007/s10930-016-9670-1

By:

Roy, Ajit;
Reddi, Ravikumar;
Sawhney, Bhavik;
Ghosh, Debasish;
Addlagatta, Anthony;
Ranjan, Akash

Publication type:

Article

Metabolic pathway engineering using the central signal processor P<sub>II</sub>.

Published in:

Microbial Cell Factories, 2015, v. 14, p. 1, doi. 10.1186/s12934-015-0384-4

By:

Watzer, Björn;
Engelbrecht, Alicia;
Hauf, Waldemar;
Stahl, Mark;
Maldener, Iris;
Forchhammer, Karl

Publication type:

Article

First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for l-amino acids and R-amines.

Published in:

Extremophiles, 2016, v. 20, n. 2, p. 215, doi. 10.1007/s00792-016-0816-z

By:

Boyko, Konstantin;
Nikolaeva, Alena;
Popov, Vladimir;
Stekhanova, Tatiana;
Bezsudnova, Ekaterina;
Mardanov, Andrey;
Rakitin, Andrey;
Ravin, Nikolai

Publication type:

Article

CRISPR-Cas immunity in prokaryotes.

Published in:

Nature, 2015, v. 526, n. 7571, p. 55, doi. 10.1038/nature15386

By:

Marraffini, Luciano A.

Publication type:

Article

The structure of CgnJ, a domain of unknown function protein from the crocagin gene cluster.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2019, v. 75, n. 3, p. 205, doi. 10.1107/S2053230X19000712

By:

Adam, Sebastian;
Klein, Andreas;
Koehnke, Jesko;
Surup, Frank

Publication type:

Article

Cytoplasmic sulfur trafficking in sulfur-oxidizing prokaryotes.

Published in:

IUBMB Life, 2015, v. 67, n. 4, p. 268, doi. 10.1002/iub.1371

By:

Dahl, Christiane

Publication type:

Article

Analysis of the Relationship between Genomic GC Content and Patterns of Base Usage, Codon Usage and Amino Acid Usage in Prokaryotes: Similar GC Content Adopts Similar Compositional Frequencies Regardless of the Phylogenetic Lineages.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107319

By:

Zhou, Hui-Qi;
Ning, Lu-Wen;
Zhang, Hui-Xiong;
Guo, Feng-Biao

Publication type:

Article

<i>Haloferax volcanii</i>, a Prokaryotic Species that Does Not Use the Shine Dalgarno Mechanism for Translation Initiation at 5′-UTRs.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094979

By:

Kramer, Piet;
Gäbel, Katrin;
Pfeiffer, Friedhelm;
Soppa, Jörg

Publication type:

Article

Structural Properties of Prokaryotic Promoter Regions Correlate with Functional Features.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088717

By:

Meysman, Pieter;
Collado-Vides, Julio;
Morett, Enrique;
Viola, Roberto;
Engelen, Kristof;
Laukens, Kris

Publication type:

Article

Evolutionary consequences of polyploidy in prokaryotes and the origin of mitosis and meiosis.

Published in:

Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0131-8

By:

Markov, Alexander V.;
Kaznacheev, Ilya S.

Publication type:

Article

KGCAK: a K-mer based database for genome-wide phylogeny and complexity evaluation.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0083-4

By:

Dapeng Wang;
Jiayue Xu;
Jun Yu

Publication type:

Article

Diversity of cyanobacteria in biological crusts on arid soils in the Eastern region of India and their molecular phylogeny.

Published in:

Current Science (00113891), 2016, v. 110, n. 10, p. 1999, doi. 10.18520/cs/v110/i10/1999-2004

By:

Kumar, Dhanesh;
Kaštánek, Petr;
Adhikary, Siba P.

Publication type:

Article

Prokaryotic expression and mechanism of action of α-helical antimicrobial peptide A20L using fusion tags.

Published in:

BMC Biotechnology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12896-015-0189-x

By:

Tonghui Yi;
Shiyu Sun;
Yibing Huang;
Yuxin Chen

Publication type:

Article

The Epigenomic Landscape of Prokaryotes.

Published in:

PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005854

By:

Blow, Matthew J.;
Clark, Tyson A.;
Daum, Chris G.;
Deutschbauer, Adam M.;
Fomenkov, Alexey;
Fries, Roxanne;
Froula, Jeff;
Kang, Dongwan D.;
Malmstrom, Rex R.;
Morgan, Richard D.;
Posfai, Janos;
Singh, Kanwar;
Visel, Axel;
Wetmore, Kelly;
Zhao, Zhiying;
Rubin, Edward M.;
Korlach, Jonas;
Pennacchio, Len A.;
Roberts, Richard J.

Publication type:

Article

Birth, Death, and Diversification of Mobile Promoters in Prokaryotes.

Published in:

Genetics, 2014, v. 197, n. 1, p. 291, doi. 10.1534/genetics.114.162883

By:

van Passel, Mark W. J.;
Nijveen, Harm;
Wahl, Lindi M.

Publication type:

Article

Diversity of Prokaryotes in Planktonic Communities of Saline Sol-Iletsk lakes (Orenburg Oblast, Russia).

Published in:

Microbiology (00262617), 2018, v. 87, n. 4, p. 569, doi. 10.1134/S0026261718040161

By:

Selivanova, E. A.;
Poshvina, D. V.;
Khlopko, Yu. A.;
Gogoleva, N. E.;
Plotnikov, A. O.

Publication type:

Article

ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0178483

By:

Promworn, Yuttachon;
Kaewprommal, Pavita;
Shaw, Philip J.;
Intarapanich, Apichart;
Tongsima, Sissades;
Piriyapongsa, Jittima

Publication type:

Article

PanWeb: A web interface for pan-genomic analysis.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0178154

By:

Pantoja, Yan;
Pinheiro, Kenny;
Veras, Allan;
Araújo, Fabrício;
Lopes de Sousa, Ailton;
Guimarães, Luis Carlos;
Silva, Artur;
Ramos, Rommel T. J.

Publication type:

Article

COBRApy: COnstraints-Based Reconstruction and Analysis for Python.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-74

By:

Ebrahim, Ali;
Lerman, Joshua A;
Palsson, Bernhard O;
Hyduke, Daniel R

Publication type:

Article

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation.

Published in:

PLoS Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1371/journal.pbio.1001776

By:

Mechaly, Ariel E.;
Sassoon, Nathalie;
Betton, Jean-Michel;
Alzari, Pedro M.

Publication type:

Article

Detection and Analysis of CRISPRs of Shigella.

Published in:

Current Microbiology, 2015, v. 70, n. 1, p. 85, doi. 10.1007/s00284-014-0683-8

By:

Guo, Xiangjiao;
Wang, Yingfang;
Duan, Guangcai;
Xue, Zerun;
Wang, Linlin;
Wang, Pengfei;
Qiu, Shaofu;
Xi, Yuanlin;
Yang, Haiyan

Publication type:

Article

Localization and Characterization of GTP-Binding Protein CT703 in the Chlamydia trachomatis-Infected Cells.

Published in:

Current Microbiology, 2011, v. 62, n. 2, p. 465, doi. 10.1007/s00284-010-9730-2

By:

Kun Du;
FuYan Wang;
Zhi Huo;
Jie Wang;
Wen Cheng;
Ming Li;
Ping Yu

Publication type:

Article

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00846

By:

Pachiadaki, Maria G.;
Rédou, Vanessa;
Beaudoin, David J.;
Burgaud, Gaëtan;
Edgcomb, Virginia P.;
Sylvan, Jason B.;
Yuriko Nagano

Publication type:

Article

Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2015.01494

By:

Ballaud, Flore;
Dufresne, Alexis;
Francez, André-Jean;
Colombet, Jonathan;
Sime-Ngando, Télesphore;
Quaiser, Achim

Publication type:

Article

Too Much Eukaryote LGT.

Published in:

BioEssays, 2017, v. 39, n. 12, p. n/a, doi. 10.1002/bies.201700115

By:

Martin, William F.

Publication type:

Article

Evolution of dynamin: Modular design of a membrane remodeling machine.

Published in:

2015

By:

Bramkamp, Marc

Publication type:

Opinion

An Interpretation of the Ancestral Codon from Miller's Amino Acids and Nucleotide Correlations in Modern Coding Sequences.

Published in:

Bioinformatics & Biology Insights, 2015, n. 9, p. 37, doi. 10.4137/BBI.S24021

By:

Carels, Nicolas;
Ponce de Leon, Miguel

Publication type:

Article

Methods of Combinatorial Optimization to Reveal Factors Affecting Gene Length.

Published in:

Bioinformatics & Biology Insights, 2012, n. 6, p. 317, doi. 10.4137/BBI.S10525

By:

Bolshoy, Alexander;
Tatarinova, Tatiana

Publication type:

Article

Nanomechanics of superbugs and superdrugs: new frontiers in nanomedicine.

Published in:

Biochemical Society Transactions, 2012, v. 40, n. 4, p. 603, doi. 10.1042/BST20120082

By:

McKendry, Rachel A.

Publication type:

Article

CpG oligonucleotides bind TLR9 and RRM-Containing proteins in Atlantic Salmon (Salmo salar).

Published in:

BMC Immunology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2172-14-12

By:

Iliev, Dimitar B.;
Skjæveland, Ingrid;
Jørgensen, Jorunn B.

Publication type:

Article

CRISPRDetect: A flexible algorithm to define CRISPR arrays.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2627-0

By:

Biswas, Ambarish;
Staals, Raymond H. J.;
Morales, Sergio E.;
Fineran, Peter C.;
Brown, Chris M.

Publication type:

Article

A comparative genomics study on the effect of individual amino acids on ribosome stalling.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S5

By:

Sabi, Renana;
Tuller, Tamir

Publication type:

Article

A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S5-S10

By:

Azevedo, Helton;
Lopes, Fabricio Martins;
Silla, Paulo Roberto;
Hungria, Mariangela

Publication type:

Article

Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1512-4

By:

Quan Zhang;
Yuzhen Ye

Publication type:

Article

Diversity in ABC transporters: Type I, II and III importers.

Published in:

Critical Reviews in Biochemistry & Molecular Biology, 2014, v. 49, n. 5, p. 426, doi. 10.3109/10409238.2014.953626

By:

Rice, Austin J.;
Park, Aekyung;
Pinkett, Heather W.

Publication type:

Article

Prokaryotic Expression and Anti-IBDV Activity of Chicken Interleukin-18 and Interferon-γ.

Published in:

Cytogenetic & Genome Research, 2018, v. 153, n. 1, p. 36, doi. 10.1159/000481522

By:

Song, Baifen;
Li, Xiaoting;
Ma, Jinzhu;
Yu, Liquan;
Feng, Zhenyue;
Liu, Zhenhua;
Cui, Yudong

Publication type:

Article

Overlapping genes and antisense transcription in eukaryotes.

Published in:

Russian Journal of Genetics, 2014, v. 50, n. 7, p. 653, doi. 10.1134/S1022795414070059

By:

Cherezov, R.;
Simonova, O.

Publication type:

Article

Diversity of CRISPR-Cas-mediated mechanisms of adaptive immunity in prokaryotes and their application in biotechnology.

Published in:

Biochemistry (00062979), 2016, v. 81, n. 7, p. 653, doi. 10.1134/S0006297916070026

By:

Savitskaya, E.;
Musharova, O.;
Severinov, K.

Publication type:

Article

Costs and benefits of natural transformation in Acinetobacter baylyi.

Published in:

BMC Microbiology, 2017, v. 17, p. 1, doi. 10.1186/s12866-017-0953-2

By:

Hülter, Nils;
Sørum, Vidar;
Borch-Pedersen, Kristina;
Liljegren, Mikkel M.;
Utnes, Ane L. G.;
Primicerio, Raul;
Harms, Klaus;
Johnsen, Pål J.

Publication type:

Article

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule.

Published in:

BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0315-9

By:

Chuan Ku;
Martin, William F.

Publication type:

Article

Cell size and other phenotypic traits of prokaryotic cells in pelagic areas of the Ross Sea (Antarctica).

Published in:

Hydrobiologia, 2015, v. 761, n. 1, p. 181, doi. 10.1007/s10750-015-2426-7

By:

La Ferla, Rosabruna;
Maimone, Giovanna;
Lo Giudice, Angelina;
Azzaro, Filippo;
Cosenza, Alessandro;
Azzaro, Maurizio

Publication type:

Article

Urinary extracellular vesicles for RNA extraction: optimization of a protocol devoid of prokaryote contamination.

Published in:

Journal of Extracellular Vesicles, 2016, v. 5, p. 1, doi. 10.3402/jev.v5.30281

By:

Tataruch-Weinert, Dorota;
Musante, Luca;
Kretz, Oliver;
Holthofer, Harry

Publication type:

Article

Protein Localization Analysis of Essential Genes in Prokaryotes.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06001

By:

Chong Peng;
Feng Gao

Publication type:

Article

Codon Distribution in Error-Detecting Circular Codes.

Published in:

Life (2075-1729), 2016, v. 6, n. 1, p. 14, doi. 10.3390/life6010014

By:

Fimmel, Elena;
Strüngmann, Lutz

Publication type:

Article

Pangenomic Definition of Prokaryotic Species and the Phylogenetic Structure of Prochlorococcus spp.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00428

By:

Moldovan, Mikhail A.;
Gelfand, Mikhail S.

Publication type:

Article

The DNA Methylome of the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldarius.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00137

By:

Couturier, Mohea;
Lindås, Ann-Christin

Publication type:

Article

Isolation and Screening of Antibiotics Producing Streptomyces spp from the Soil Collected around the Root of Alnus nepalensis from Godawari.

Published in:

Nepal Journal of Biotechnology, 2018, v. 6, n. 1, p. 46

By:

Baniya, Amina;
Singh, Sushma;
Singh, Minu;
Nepal, Pragya;
Adhikari, Mahesh;
Aryal, Sagar;
Adhikari, Anurag

Publication type:

Article

Phage Genetic Engineering Using CRISPR–Cas Systems.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 6, p. 335, doi. 10.3390/v10060335

By:

Hatoum-Aslan, Asma

Publication type:

Article