Works matching DE "PENTATRICOPEPTIDE repeat genes"

Results: 199

PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana.

Published in:

Photosynthesis Research, 2015, v. 126, n. 2/3, p. 311, doi. 10.1007/s11120-015-0171-4

By:

Zhang, Hong-Dao;
Cui, Yong-Lan;
Huang, Chao;
Yin, Qian-Qian;
Qin, Xue-Mei;
Xu, Te;
He, Xiao-Fang;
Zhang, Yi;
Li, Zi-Ran;
Yang, Zhong-Nan

Publication type:

Article

Two pentatricopeptide repeat domain proteins are required for the synthesis of respiratory complex I.

Published in:

Current Genetics, 2015, v. 61, n. 1, p. 19, doi. 10.1007/s00294-014-0441-2

By:

Solotoff, V.;
Moseler, R.;
Schulte, U.

Publication type:

Article

Cofactor-independent RNA editing by a synthetic S-type PPR protein.

Published in:

Synthetic Biology (23977000), 2022, v. 7, n. 1, p. 1, doi. 10.1093/synbio/ysab034

By:

Bernath-Levin, Kalia;
Schmidberger, Jason;
Honkanen, Suvi;
Gutmann, Bernard;
Sun, Yueming Kelly;
Pullakhandam, Anuradha;
Francs-Small, Catherine Colas des;
Bond, Charles S;
Small, Ian

Publication type:

Article

Mitochondrial RNA editing PPR proteins cantolerate protein tags at E as well as at DYW domain termini.

Published in:

Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00127

By:

Brehme, Nadja;
Zehrmann, Anja;
Verbitskiy, Daniil;
Härtel, Barbara;
Takenaka, Mizuki

Publication type:

Article

Editorial: Genomics and Effectomics of Filamentous Plant Pathogens.

Published in:

2021

By:

Ye, Wenwu;
Wang, Qinhu;
Tripathy, Sucheta;
Zhang, Meixiang;
Vetukuri, Ramesh R.

Publication type:

Editorial

The FpPPR1 Gene Encodes a Pentatricopeptide Repeat Protein That Is Essential for Asexual Development, Sporulation, and Pathogenesis in Fusarium pseudograminearum.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.535622

By:

Wang, Limin;
Xie, Shunpei;
Zhang, Yinshan;
Kang, Ruijiao;
Zhang, Mengjuan;
Wang, Min;
Li, Haiyang;
Chen, Linlin;
Yuan, Hongxia;
Ding, Shengli;
Liang, Shen;
Li, Honglian

Publication type:

Article

Heterozygous alleles restore male fertility to cytoplasmic male-sterile radish (Raphanus sativus L.): a case of overdominance.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 7, p. 2041, doi. 10.1093/jxb/ert065

By:

Wang, Zhi Wei;
Wang, Chuan;
Gao, Lei;
Mei, Shi Yong;
Zhou, Yuan;
Xiang, Chang Ping;
Wang, Ting

Publication type:

Article

PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development.

Published in:

Journal of Experimental Botany, 2012, v. 63, n. 16, p. 5843, doi. 10.1093/jxb/ers232

By:

Sosso, Davide;
Canut, Matthieu;
Gendrot, Ghislaine;
Dedieu, Annick;
Chambrier, Pierre;
Barkan, Alice;
Consonni, Gabriella;
M. Rogowsky, Peter

Publication type:

Article

Transcriptional analysis of the Arabidopsis ovule by massively parallel signature sequencing.

Published in:

Journal of Experimental Botany, 2012, v. 63, n. 10, p. 3829

By:

Sánchez-León, Nidia;
Arteaga-Vázquez, Mario;
Alvarez-Mejía, César;
Mendiola-Soto, Javier;
Durán-Figueroa, Noé;
Rodríguez-Leal, Daniel;
Rodríguez-Arévalo, Isaac;
García-Campayo, Vicenta;
García-Aguilar, Marcelina;
Olmedo-Monfil, Vianey;
Arteaga-Sánchez, Mario;
Martínez de la Vega, Octavio;
Nobuta, Kan;
Vemaraju, Kalyan;
Meyers, Blake C.;
Vielle-Calzada, Jean-Philippe

Publication type:

Article

Elevated expression of PTCD3 correlates with tumor progression and predicts poor prognosis in patients with prostate cancer.

Published in:

Molecular Medicine Reports, 2018, v. 18, n. 4, p. 3914, doi. 10.3892/mmr.2018.9402

By:

Huang, Yiqiao;
Jiang, Ganggang;
Liang, Xue;
Lan, Ziquan;
Su, Zhengming;
Wu, Hualing;
Weng, Jinsheng;
Jiang, Xianhan

Publication type:

Article

Multiple evolutionary origins of high mountain bellflowers with solitary flowers and calyx scales render a core Caucasian clade of the Scapiflorae group (Campanulaceae).

Published in:

Systematics & Biodiversity, 2019, v. 17, n. 7, p. 690, doi. 10.1080/14772000.2019.1679273

By:

Silakadze, Nana;
Kilian, Norbert;
Korotkova, Nadja;
Mosulishvili, Marine;
Borsch, Thomas

Publication type:

Article

Genome-wide investigation and functional analysis of RNA editing sites in wheat.

Published in:

PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0265270

By:

Rasool, Fatima;
Ishtiaq, Iqra;
Uzair, Muhammad;
Naz, Ali Ahmed;
Léon, Jens;
Khan, Muhammad Ramzan

Publication type:

Article

Phylogenetic Genomewide Comparisons of the Pentatricopeptide Repeat Gene Family in indica and japonica Rice.

Published in:

Biochemical Genetics, 2012, v. 50, n. 11/12, p. 978, doi. 10.1007/s10528-012-9537-x

By:

Li, Shaobo;
Sun, Qingping;
Hu, Minghua;
Li, Shaoqing;
Zhu, Youlin;
Zhu, Yingguo

Publication type:

Article

Identification of QTL for kernel weight and size and analysis of the pentatricopeptide repeat (PPR) gene family in cultivated peanut (Arachis hypogaea L.).

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09568-y

By:

Fang, Yuanjin;
Liu, Hua;
Qin, Li;
Qi, Feiyan;
Sun, Ziqi;
Wu, Jihua;
Dong, Wenzhao;
Huang, Bingyan;
Zhang, Xinyou

Publication type:

Article

Expression, Purification, and Secondary Structure Prediction of Pentatricopeptide Repeat Protein RF1A from Rice.

Published in:

Plant Molecular Biology Reporter, 2011, v. 29, n. 3, p. 739, doi. 10.1007/s11105-010-0260-7

By:

Kun, Wang;
Feng, Gao;
Renshan, Zhu;
Shaoqing, Li;
Yingguo, Zhu

Publication type:

Article

Characterization of Upstream Sequences of the LOJ Gene Leads to Identification of a Novel Enhancer Element Conferring Lateral Organ Junction-Specific Expression in Arabidopsis thaliana.

Published in:

Plant Molecular Biology Reporter, 2011, v. 29, n. 2, p. 265, doi. 10.1007/s11105-010-0229-6

By:

Saha, Dipnarayan;
Kumar, Vajinder;
Bhat, Shripad;
Srinivasan, Ramamurthy

Publication type:

Article

Pentatricopeptide motifs in the N-terminal extension domain of yeast mitochondrial RNA polymerase Rpo41p are not essential for its function.

Published in:

Biochemistry (00062979), 2016, v. 81, n. 10, p. 1101, doi. 10.1134/S0006297916100084

By:

Kruszewski, J.;
Golik, P.

Publication type:

Article

A synthetic RNA editing factor edits its target site in chloroplasts and bacteria.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02062-9

By:

Royan, Santana;
Gutmann, Bernard;
Colas des Francs-Small, Catherine;
Honkanen, Suvi;
Schmidberger, Jason;
Soet, Ashley;
Sun, Yueming Kelly;
Vincis Pereira Sanglard, Lilian;
Bond, Charles S.;
Small, Ian

Publication type:

Article

Comparative transcriptomics analysis of tolerant and sensitive genotypes reveals genes involved in the response to cold stress in bitter gourd (Momordica charantia L.).

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-58754-9

By:

Ning, Yu;
Liu, Zhiyang;
Liu, Jing;
Qi, Renjie;
Xia, Pengfei;
Yuan, Xihan;
Xu, Hai;
Chen, Longzheng

Publication type:

Article

A unique C‐terminal domain contributes to the molecular function of Restorer‐of‐fertility proteins in plant mitochondria.

Published in:

New Phytologist, 2023, v. 240, n. 2, p. 830, doi. 10.1111/nph.19166

By:

Huynh, Sang Dang;
Melonek, Joanna;
Colas des Francs‐Small, Catherine;
Bond, Charles S.;
Small, Ian

Publication type:

Article

Towards a plant model for enigmatic U‐to‐C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis.

Published in:

New Phytologist, 2020, v. 225, n. 5, p. 1974, doi. 10.1111/nph.16297

By:

Gerke, Philipp;
Szövényi, Péter;
Neubauer, Anna;
Lenz, Henning;
Gutmann, Bernard;
McDowell, Rose;
Small, Ian;
Schallenberg‐Rüdinger, Mareike;
Knoop, Volker

Publication type:

Article

Rice PPS1 encodes a DYW motif‐containing pentatricopeptide repeat protein required for five consecutive RNA‐editing sites of nad3 in mitochondria.

Published in:

New Phytologist, 2018, v. 220, n. 3, p. 878, doi. 10.1111/nph.15347

By:

Xiao, Haijun;
Zhang, Qiannan;
Qin, Xiaojian;
Xu, Yanghong;
Ni, Chenzi;
Huang, Jishuai;
Zhu, Linlin;
Zhong, Feiya;
Liu, Wei;
Yao, Guoxin;
Zhu, Yingguo;
Hu, Jun

Publication type:

Article

The mitochondrial pentatricopeptide repeat protein PPR19 is involved in the stabilization of NADH dehydrogenase 1 transcripts and is crucial for mitochondrial function and Arabidopsis thaliana development.

Published in:

New Phytologist, 2017, v. 215, n. 1, p. 202, doi. 10.1111/nph.14528

By:

Lee, Kwanuk;
Han, Ji Hoon;
Park, Youn‐Il;
Colas des Francs‐Small, Catherine;
Small, Ian;
Kang, Hunseung

Publication type:

Article

E+ subgroup PPR protein defective kernel 36 is required for multiple mitochondrial transcripts editing and seed development in maize and Arabidopsis.

Published in:

New Phytologist, 2017, v. 214, n. 4, p. 1563, doi. 10.1111/nph.14507

By:

Wang, Gang;
Zhong, Mingyu;
Shuai, Bilian;
Song, Jiandong;
Zhang, Jie;
Han, Liang;
Ling, Huiling;
Tang, Yuanping;
Wang, Guifeng;
Song, Rentao

Publication type:

Article

The pentatricopeptide repeat protein EMP9 is required for mitochondrial ccmB and rps4 transcript editing, mitochondrial complex biogenesis and seed development in maize.

Published in:

New Phytologist, 2017, v. 214, n. 2, p. 782, doi. 10.1111/nph.14424

By:

Yang, Yan‐Zhuo;
Ding, Shuo;
Wang, Hong‐Chun;
Sun, Feng;
Huang, Wen‐Long;
Song, Shu;
Xu, Chunhui;
Tan, Bao‐Cai

Publication type:

Article

The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/ E mRNA.

Published in:

Plant Journal, 2012, v. 72, n. 4, p. 547, doi. 10.1111/j.1365-313X.2012.05081.x

By:

Zoschke, Reimo;
Kroeger, Tiffany;
Belcher, Susan;
Schöttler, Mark Aurel;
Barkan, Alice;
Schmitz-Linneweber, Christian

Publication type:

Article

Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria.

Published in:

Plant Journal, 2012, v. 72, n. 3, p. 450, doi. 10.1111/j.1365-313X.2012.05091.x

By:

Toda, Takushi;
Fujii, Sota;
Noguchi, Ko;
Kazama, Tomohiko;
Toriyama, Kinya

Publication type:

Article

SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism.

Published in:

Plant Journal, 2012, v. 71, n. 5, p. 836, doi. 10.1111/j.1365-313X.2012.05036.x

By:

Zhu, Qiang;
Dugardeyn, Jasper;
Zhang, Chunyi;
Takenaka, Mizuki;
Kühn, Kristina;
Craddock, Christian;
Smalle, Jan;
Karampelias, Michael;
Denecke, Jurgen;
Peters, Janny;
Gerats, Tom;
Brennicke, Axel;
Eastmond, Peter;
Meyer, Etienne H.;
Van Der Straeten, Dominique

Publication type:

Article

Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis.

Published in:

Plant Journal, 2012, v. 70, n. 3, p. 432, doi. 10.1111/j.1365-313X.2011.04883.x

By:

Yuan, Hui;
Liu, Dong

Publication type:

Article

A PPR-DYW protein is required for splicing of a group II intron of cox1 pre-mRNA in Physcomitrella patens.

Published in:

Plant Journal, 2012, v. 70, n. 2, p. 271, doi. 10.1111/j.1365-313X.2011.04869.x

By:

Ichinose, Mizuho;
Tasaki, Eiji;
Sugita, Chieko;
Sugita, Mamoru

Publication type:

Article

PROTON GRADIENT REGULATION 3 recognizes multiple targets with limited similarity and mediates translation and RNA stabilization in plastids.

Published in:

Plant Journal, 2011, v. 67, n. 2, p. 318, doi. 10.1111/j.1365-313X.2011.04593.x

By:

Cai, Wenhe;
Okuda, Kenji;
Peng, Lianwei;
Shikanai, Toshiharu

Publication type:

Article

Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica.

Published in:

Plant Journal, 2011, v. 67, n. 2, p. 370, doi. 10.1111/j.1365-313X.2011.04600.x

By:

Rüdinger, Mareike;
Szövényi, Péter;
Rensing, Stefan A.;
Knoop, Volker

Publication type:

Article

AtPPR2, an Arabidopsis pentatricopeptide repeat protein, binds to plastid 23S rRNA and plays an important role in the first mitotic division during gametogenesis and in cell proliferation during embryogenesis.

Published in:

Plant Journal, 2011, v. 67, n. 1, p. 13, doi. 10.1111/j.1365-313X.2011.04569.x

By:

Lu, Yuqing;
Li, Cong;
Wang, Hai;
Chen, Hao;
Berg, Howard;
Xia, Yiji

Publication type:

Article

A RESTORER OF FERTILITY-like PPR gene is required for 5′-end processing of the nad4 mRNA in mitochondria of Arabidopsis thaliana.

Published in:

Plant Journal, 2011, v. 65, n. 5, p. 737, doi. 10.1111/j.1365-313X.2010.04460.x

By:

Hölzle, Angela;
Jonietz, Christian;
Törjek, Ottó;
Altmann, Thomas;
Binder, Stefan;
Forner, Joachim

Publication type:

Article

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

Published in:

Plant Journal, 2011, v. 65, n. 4, p. 532, doi. 10.1111/j.1365-313X.2010.04441.x

By:

Chateigner-Boutin, Anne-Laure;
des Francs-Small, Catherine Colas;
Delannoy, Etienne;
Kahlau, Sabine;
Tanz, Sandra K.;
de Longevialle, Andéol Falcon;
Fujii, Sota;
Small, Ian

Publication type:

Article

Interaction of the pentatricopeptide-repeat protein DELAYED GREENING 1 with sigma factor SIG6 in the regulation of chloroplast gene expression in Arabidopsis cotyledons.

Published in:

Plant Journal, 2010, v. 64, n. 1, p. 14, doi. 10.1111/j.1365-313X.2010.04304.x

By:

Chi, Wei;
Mao, Juan;
Li, Qiannan;
Ji, Daili;
Zou, Meijuan;
Lu, Congming;
Zhang, Lixin

Publication type:

Article

The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria.

Published in:

Plant Journal, 2010, v. 63, n. 3, p. 499, doi. 10.1111/j.1365-313X.2010.04258.x

By:

Sung, Tzu-Ying;
Tseng, Ching-Chih;
Hsieh, Ming-Hsiun

Publication type:

Article

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts.

Published in:

Plant Journal, 2010, v. 61, n. 2, p. 339, doi. 10.1111/j.1365-313X.2009.04059.x

By:

Okuda, Kenji;
Hammani, Kamel;
Tanz, Sandra K.;
Lianwei Peng;
Fukao, Yoichiro;
Myouga, Fumiyoshi;
Motohashi, Reiko;
Shinozaki, Kazuo;
Small, Ian;
Shikanai, Toshiharu

Publication type:

Article

Identification of a novel pentatricopeptide repeat subfamily with a C-terminal domain of bacterial origin acquired via ancient horizontal gene transfer.

Published in:

BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-525

By:

Manna, Sam;
Barth, Christian

Publication type:

Article

Two independent activities define Ccm1p as a moonlighting protein in Saccharomyces cerevisiae.

Published in:

Bioscience Reports, 2012, v. 32, n. 6, p. 549, doi. 10.1042/BSR20120066

By:

MORENO, J. Ignacio;
PATLOLLA, Babu;
BELTON, Kerry R.;
JENKINS, Brenita C.;
RADCHENKOVA, Polina V.;
PIVA, Marta A.

Publication type:

Article

Fine mapping of Rf5 region for a sorghum fertility restorer gene and microsynteny analysis across grass species.

Published in:

Breeding Science, 2022, v. 72, n. 2, p. 141, doi. 10.1270/jsbbs.21057

By:

Atsushi Kiyosawa;
Jun-ichi Yonemaru;
Hiroshi Mizuno;
Hiroyuki Kanamori;
Jianzhong Wu;
Hiroyuki Kawahigashi;
Kazumi Goto

Publication type:

Article

A Zinc Finger Motif-Containing Protein Is Essential for Chloroplast RNA Editing.

Published in:

PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005028

By:

Sun, Tao;
Shi, Xiaowen;
Friso, Giulia;
Van Wijk, Klaas;
Bentolila, Stephane;
Hanson, Maureen R.

Publication type:

Article

Mutation of the pentatricopeptide repeat-SMR protein SVR7 impairs accumulation and translation of chloroplast ATP synthase subunits in Arabidopsis thaliana.

Published in:

Journal of Plant Research, 2013, v. 126, n. 3, p. 403, doi. 10.1007/s10265-012-0527-1

By:

Zoschke, Reimo;
Qu, Yujiao;
Zubo, Yan;
Börner, Thomas;
Schmitz-Linneweber, Christian

Publication type:

Article

Dynamic response of RNA editing to temperature in grape by RNA deep sequencing.

Published in:

Functional & Integrative Genomics, 2020, v. 20, n. 3, p. 421, doi. 10.1007/s10142-019-00727-7

By:

Zhang, Aidi;
Jiang, Xiaohan;
Zhang, Fuping;
Wang, Tengfei;
Zhang, Xiujun

Publication type:

Article

Mitochondrial Pentatricopeptide Repeat Protein, EMB2794, Plays a Pivotal Role in NADH Dehydrogenase Subunit nad2 mRNA Maturation in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2020, v. 61, n. 6, p. 1080, doi. 10.1093/pcp/pcaa028

By:

Marchetti, Fernanda;
Cainzos, Maximiliano;
Shevtsov, Sofía;
Córdoba, Juan Pablo;
Sultan, Laure Dora;
Brennicke, Axel;
Takenaka, Mizuki;
Pagnussat, Gabriela;
Ostersetzer-Biran, Oren;
Zabaleta, Eduardo

Publication type:

Article

PALE-GREEN LEAF12 Encodes a Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA Processing in Rice.

Published in:

Plant & Cell Physiology, 2019, v. 60, n. 3, p. 587, doi. 10.1093/pcp/pcy229

By:

Chen, Long;
Huang, Lichao;
Dai, Liping;
Gao, Yihong;
Zou, Weiwei;
Lu, Xueli;
Wang, Changjian;
Zhang, Guangheng;
Ren, Deyong;
Hu, Jiang;
Shen, Lan;
Dong, Guojun;
Gao, Zhenyu;
Chen, Guang;
Xue, Dawei;
Guo, Longbiao;
Xing, Yongzhong;
Qian, Qian;
Zhu, Li;
Zeng, Dali

Publication type:

Article

Erratum.

Published in:: 2018
Publication type:: Correction Notice

The DYW Domains of Pentatricopeptide Repeat RNA Editing Factors Contribute to Discriminate Target and Non-Target Editing Sites.

Published in:: Plant & Cell Physiology, 2018, v. 59, n. 8, p. 1652, doi. 10.1093/pcp/pcy086
Publication type:: Article

The Pentatricopeptide Repeat Protein MEF31 is Required for Editing at Site 581 of the Mitochondrial tatC Transcript and Indirectly Influences Editing at Site 586 of the Same Transcript.

Published in:

Plant & Cell Physiology, 2018, v. 59, n. 2, p. 355, doi. 10.1093/pcp/pcx190

By:

Arenas-M, Anita;
González-Durán, Enrique;
Gómez, Isabel;
Burger, Matthias;
Brennicke, Axel;
Takenaka, Mizuki;
Jordana, Xavier

Publication type:

Article

A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens.

Published in:

Plant & Cell Physiology, 2017, v. 58, n. 3, p. 496, doi. 10.1093/pcp/pcw229

By:

Schallenberg-Rüdinger, Mareike;
Oldenkott, Bastian;
Hiss, Manuel;
Le Trinh, Phuong;
Knoop, Volker;
Rensing, Stefan A.

Publication type:

Article