Works matching DE "NUCLEOTIDE sequencing"

Results: 5000

Allele frequency in thyroid cancer: mechanisms, challenges, and applications in cancer therapy.

Published in:

Thyroid Research, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13044-025-00237-8

By:

Huang, Jiayu;
Wang, Jiazhi;
Wang, Guangzhi;
Zhao, Yongfu

Publication type:

Article

Artificial intelligence–driven microsatellite instability profiling reveals distinctive genetic features in patients with lung cancer.

Published in:

Cancer (0008543X), 2025, v. 131, n. 9, p. 1, doi. 10.1002/cncr.35882

By:

Thomas, Quentin Dominique;
Vendrell, Julie Adèle;
Khellaf, Lakhdar;
Cavaillon, Sarah;
Quantin, Xavier;
Solassol, Jérôme;
Cabello‐Aguilar, Simon

Publication type:

Article

An unusual transfusion-dependent hemoglobin H disease caused by a novel complex inverted duplication involving the α-globin regulatory elements and α-thalassemia—-SEA deletion.

Published in:

Annals of Hematology, 2025, v. 104, n. 4, p. 2529, doi. 10.1007/s00277-025-06223-2

By:

Jiang, Fan;
Wu, Jieying;
Yang, Manqiu;
Chen, Xiaojun;
Li, Ru;
Yu, Qiuxia;
Zuo, Liandong;
Zhou, Jianying;
Zhang, Yongling;
Zhen, Li;
Tang, Xuewei;
Zhang, Ren;
Chen, Shiping;
Wang, Chenyu;
Liao, Can;
Li, Dongzhi

Publication type:

Article

How to combine multiple tools for the genetic diagnosis work-up of pediatric B-cell acute lymphoblastic leukemia.

Published in:

Annals of Hematology, 2025, v. 104, n. 4, p. 2387, doi. 10.1007/s00277-024-06151-7

By:

Hidalgo-Gómez, Gloria;
Tazón-Vega, Bárbara;
Palacio, Carlos;
Saumell, Silvia;
Martínez-Morgado, Noemi;
Navarro, Víctor;
Murillo, Laura;
Velasco, Pablo;
Murciano, Thais;
Díaz de Heredia, Cristina;
Bosch, Francesc;
Armengol, Gemma;
Ortega, Margarita

Publication type:

Article

SYMPOSIUM 2 - The present and future of minimal residual disease (MRD) assessment.

Published in:: Clinical Chemistry & Laboratory Medicine, 2025, v. 63, n. 1, p. s27, doi. 10.1515/cclm-2025-8014
Publication type:: Article

Reinfection of SARS-CoV-2 Variants in Immunocompromised Patients with Prolonged or Relapsed Viral Shedding.

Published in:

Infection & Chemotherapy, 2025, v. 57, n. 1, p. 81, doi. 10.3947/ic.2024.0098

By:

Ji Yeun Kim;
Euijin Chang;
Hyeon Mu Jang;
Jun Ho Cha;
Ju Yeon Son;
Choi Young Jang;
Jeong-Sun Yang;
Joo-Yeon Lee;
Sung-Han Kim

Publication type:

Article

Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00704-7

By:

Herbert, Josephine;
Thompson, Stanley;
Beckett, Angela H.;
Robson, Samuel C.

Publication type:

Article

Metagenomic and Molecular Detection of Novel Fecal Viruses in Free-Ranging Agile Wallabies.

Published in:

EcoHealth, 2023, v. 20, n. 4, p. 427, doi. 10.1007/s10393-023-01659-2

By:

Okoh, God'spower Richard;
Ariel, Ellen;
Whitmore, David;
Horwood, Paul F.

Publication type:

Article

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini.

Published in:

EcoHealth, 2021, v. 18, n. 4, p. 421, doi. 10.1007/s10393-021-01567-3

By:

Shapiro, Julie Teresa;
Mollerup, Sarah;
Jensen, Randi Holm;
Olofsson, Jill Katharina;
Nguyen, Nam-phuong D.;
Hansen, Thomas Arn;
Vinner, Lasse;
Monadjem, Ara;
McCleery, Robert A.;
Hansen, Anders J.

Publication type:

Article

Isolation and Genomic Characterization of Echovirus 11 from faeces of a Non-Human Primate in Nigeria.

Published in:

EcoHealth, 2020, v. 17, n. 4, p. 461, doi. 10.1007/s10393-021-01515-1

By:

Faleye, T. O. C.;
George, U. E.;
Klapsa, D.;
Majumdar, M.;
Oragwa, A. O.;
Adewumi, M. O.;
Martin, J.;
Adeniji, J. A.

Publication type:

Article

GENEALOGY GEMS: GENETIC GENEALOGY.

Published in:

Kentucky Libraries, 2015, v. 79, n. 3, p. 8

By:

PENNAVARIA, KATHERINE;
MESZAROS, ROSEMARY

Publication type:

Article

Investigation of hub genes and their nonsynonymous single nucleotide polymorphism analysis in Plasmodium falciparum for designing therapeutic methodologies using next-generation sequencing approach.

Published in:

Indian Journal of Pharmacology, 2019, v. 51, n. 6, p. 389, doi. 10.4103/ijp.IJP_535_19

By:

Singh, Sanjay;
Reddy, Sudhakara

Publication type:

Article

A Roadmap for Fern Genome Sequencing.

Published in:

American Fern Journal, 2019, v. 109, n. 3, p. 212, doi. 10.1640/0002-8444-109.3.212

By:

Kuo, Li-Yaung;
Li, Fay-Wei

Publication type:

Article

Ferns: The Final Frond-tier in Plant Model Systems.

Published in:

American Fern Journal, 2019, v. 109, n. 3, p. 192, doi. 10.1640/0002-8444-109.3.192

By:

Petlewski, Alaina R.;
Li, Fay-Wei

Publication type:

Article

Saintpaulia Goetzeana Blooms for Canadian Grower.

Published in:

African Violet Magazine, 2012, v. 65, n. 4, p. 48

By:

James, Iain

Publication type:

Article

Hyperexpansion of RNA Bacteriophage Diversity.

Published in:

PLoS Biology, 2016, v. 14, n. 3, p. 1, doi. 10.1371/journal.pbio.1002409

By:

Krishnamurthy, Siddharth R.;
Janowski, Andrew B.;
Zhao, Guoyan;
Barouch, Dan;
Wang, David

Publication type:

Article

Social Experimentation with Interdependent and Expanding Technologies.

Published in:

Review of Economic Studies, 2016, v. 83, n. 4, p. 1579, doi. 10.1093/restud/rdw008

By:

GARFAGNINI, UMBERTO;
STRULOVICI, BRUNO

Publication type:

Article

SAKit: An all-in-one analysis pipeline for identifying novel proteins resulting from variant events at both large and small scales.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 5, p. 1, doi. 10.1142/S0219720024500227

By:

Li, Yan;
Wang, Boran;
Wu, Zengding;
Ji, Shiliang;
Xu, Shi;
Fei, Caiyi

Publication type:

Article

Analyzing the performance of short-read classification tools on metagenomic samples toward proper diagnosis of diseases.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 5, p. 1, doi. 10.1142/S0219720024500124

By:

Irankhah, Leili;
Khorsand, Babak;
Naghibzadeh, Mahmoud;
Savadi, Abdorreza

Publication type:

Article

A novel method addressing NGS-based mappability bias for sensitive detection of DNA alterations.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 3, p. 1, doi. 10.1142/S0219720024500094

By:

Sinha, Rituparna;
Pal, Rajat Kumar;
De, Rajat Kumar

Publication type:

Article

CNV-FB: A Feature bagging strategy-based approach to detect copy number variants from NGS data.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1142/S0219720023500269

By:

Li, Chengyou;
Fan, Shiqiang;
Zhao, Haiyong;
Liu, Xiaotong

Publication type:

Article

EdClust: A heuristic sequence clustering method with higher sensitivity.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1142/S0219720021500360

By:

Cao, Ming;
Peng, Qinke;
Wei, Ze-Gang;
Liu, Fei;
Hou, Yi-Fan

Publication type:

Article

ProgSIO-MSA: Progressive-based single iterative optimization framework for multiple sequence alignment using an effective scoring system.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 2, p. N.PAG, doi. 10.1142/S0219720020500055

By:

Bankapur, Sanjay;
Patil, Nagamma

Publication type:

Article

AUSPP: A universal short-read pre-processing package.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 6, p. N.PAG, doi. 10.1142/S0219720019500379

By:

Gao, Lei;
Wu, Cong;
Liu, Lin

Publication type:

Article

An enrichment method for mapping ambiguous reads to the reference genome for NGS analysis.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 6, p. N.PAG, doi. 10.1142/S0219720019400122

By:

Liu, Yuan;
Ma, Yongchao;
Salsman, Evan;
Manthey, Frank A.;
Elias, Elias M.;
Li, Xuehui;
Yan, Changhui

Publication type:

Article

Fast and memory efficient approach for mapping NGS reads to a reference genome.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 2, p. N.PAG, doi. 10.1142/S0219720019500082

By:

Kumar, Sanjeev;
Agarwal, Suneeta;
Ranvijay

Publication type:

Article

A 2-approximation algorithm for the contig-based genomic scaffold filling problem.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 6, p. N.PAG, doi. 10.1142/S0219720018500221

By:

Jiang, Haitao;
Qingge, Letu;
Zhu, Daming;
Zhu, Binhai

Publication type:

Article

WBFQC: A new approach for compressing next-generation sequencing data splitting into homogeneous streams.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 5, p. N.PAG, doi. 10.1142/S021972001850018X

By:

Kumar, Sanjeev;
Agarwal, Suneeta;
Ranvijay

Publication type:

Article

Neanderthal and Denisovan ancestry in Papuans: A functional study.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 2, p. -1, doi. 10.1142/S0219720018400115

By:

Akkuratov, Evgeny E.;
Gelfand, Mikhail S.;
Khrameeva, Ekaterina E.

Publication type:

Article

Bacterial promoter prediction: Selection of dynamic and static physical properties of DNA for reliable sequence classification.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 1, p. -1, doi. 10.1142/S0219720018400036

By:

Ryasik, Artem;
Orlov, Mikhail;
Zykova, Evgenia;
Ermak, Timofei;
Sorokin, Anatoly

Publication type:

Article

Metagenome sequence clustering with hash-based canopies.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 6, p. -1, doi. 10.1142/S0219720017400066

By:

Rahman, Mohammad Arifur;
LaPierre, Nathan;
Rangwala, Huzefa;
Barbara, Daniel

Publication type:

Article

An efficient method for significant motifs discovery from multiple DNA sequences.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 4, p. -1, doi. 10.1142/S0219720017500147

By:

Al-Ssulami, Abdulrakeeb M.;
Azmi, Aqil M.;
Mathkour, Hassan

Publication type:

Article

Large-scale parallel genome assembler over cloud computing environment.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017400030

By:

Das, Arghya Kusum;
Koppa, Praveen Kumar;
Goswami, Sayan;
Platania, Richard;
Park, Seung-Jong

Publication type:

Article

Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 4, p. -1, doi. 10.1142/S0219720016500177

By:

Cao, Chang-Chang;
Sun, Xiao

Publication type:

Article

Memory efficient assembly of human genome.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 2, p. -1, doi. 10.1142/S0219720015500080

By:

Hormozdiari, Farhad;
Eskin, Eleazar

Publication type:

Article

AKSmooth: Enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 6, p. -1, doi. 10.1142/S0219720014420050

By:

Chen, Junfang;
Lutsik, Pavlo;
Akulenko, Ruslan;
Walter, Jörn;
Helms, Volkhard

Publication type:

Article

Measurement of word frequencies in genomic DNA sequences based on partial alignment and fuzzy set.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 4, p. 1, doi. 10.1142/S021972001450019X

By:

Fumiya Shida;
Satoshi Mizuta

Publication type:

Article

Quantitative evaluation of properties of residual DNA in Cryptomeria japonica wood.

Published in:

Journal of Wood Science, 2015, v. 61, n. 1, p. 1, doi. 10.1007/s10086-014-1447-6

By:

Watanabe, Ugai;
Abe, Hisashi;
Yoshida, Kazumasa;
Sugiyama, Junji

Publication type:

Article

Slowing DNA Transport Using Graphene-DNA Interactions.

Published in:

Advanced Functional Materials, 2015, v. 25, n. 6, p. 936, doi. 10.1002/adfm.201403719

By:

Banerjee, Shouvik;
Wilson, James;
Shim, Jiwook;
Shankla, Manish;
Corbin, Elise A.;
Aksimentiev, Aleksei;
Bashir, Rashid

Publication type:

Article

Unusual features in the photosynthetic machinery of Halorhodospira halochloris DSM 1059 revealed by complete genome sequencing.

Published in:

Photosynthesis Research, 2019, v. 140, n. 3, p. 311, doi. 10.1007/s11120-019-00613-0

By:

Tsukatani, Yusuke;
Hirose, Yuu;
Harada, Jiro;
Yonekawa, Chinatsu;
Tamiaki, Hitoshi

Publication type:

Article

A CsYcf54 variant conferring light green coloration in cucumber.

Published in:

Euphytica, 2016, v. 208, n. 3, p. 509, doi. 10.1007/s10681-015-1592-z

By:

Lun, Yaoyao;
Wang, Xin;
Zhang, Chunzhi;
Yang, Li;
Gao, Dongli;
Chen, Huiming;
Huang, Sanwen

Publication type:

Article

Precision QTL mapping of downy mildew resistance in hop ( Humulus lupulus L.).

Published in:

Euphytica, 2015, v. 202, n. 3, p. 487, doi. 10.1007/s10681-015-1356-9

By:

Henning, J.;
Gent, D.;
Twomey, M.;
Townsend, M.;
Pitra, N.;
Matthews, P.

Publication type:

Article

Fine mapping and candidate gene analysis of a new mutant gene for panicle apical abortion in rice.

Published in:

Euphytica, 2014, v. 197, n. 3, p. 387, doi. 10.1007/s10681-014-1074-8

By:

Akter, Md.;
Piao, Rihua;
Kim, Backki;
Lee, Yunjoo;
Koh, Eunbyeol;
Koh, Hee-Jong

Publication type:

Article

Metabolic pathway analysis of walnut endophytic bacterium Bacillus subtilis HB1310 related to lipid production from fermentation of cotton stalk hydrolysate based on genome sequencing.

Published in:

Biotechnology Letters, 2021, v. 43, n. 9, p. 1883, doi. 10.1007/s10529-021-03160-8

By:

Zhang, Qin;
Liu, Panpan;
Li, Yanbin;
Jiang, Hui

Publication type:

Article

Production of 1,3-propanediol and lactic acid from crude glycerol by a microbial consortium from intertidal sludge.

Published in:

Biotechnology Letters, 2021, v. 43, n. 3, p. 711, doi. 10.1007/s10529-020-03063-0

By:

Jiang, Li-Li;
Liu, Feng-Yi;
Yang, Wei;
Li, Chang-Li;
Zhu, Bao-Wei;
Zhu, Xiu-Hui

Publication type:

Article

Genome sequencing and phylogenetic analysis of K1G4: a new Komagataeibacter strain producing bacterial cellulose from different carbon sources.

Published in:

Biotechnology Letters, 2020, v. 42, n. 5, p. 807, doi. 10.1007/s10529-020-02811-6

By:

La China, Salvatore;
Bezzecchi, Andrea;
Moya, Felipe;
Petroni, Giulio;
Di Gregorio, Simona;
Gullo, Maria

Publication type:

Article

High-throughput amplicon sequencing demonstrates extensive diversity of xylanase genes in the sediment of soda lake Dabusu.

Published in:

Biotechnology Letters, 2019, v. 41, n. 3, p. 409, doi. 10.1007/s10529-019-02646-w

By:

Wang, Guozeng;
Ren, Yaxin;
Ng, Tzi Bun;
Streit, Wolfgang R.;
Ye, Xiuyun

Publication type:

Article

Improved nucleic acid extraction protocols for Ganoderma boninense, G. miniatocinctum and G. tornatum.

Published in:

Biotechnology Letters, 2018, v. 40, n. 11/12, p. 1541, doi. 10.1007/s10529-018-2603-7

By:

Nagappan, Jayanthi;
Chin, Chiew Foan;
Angel, Lee Pei Lee;
Cooper, Richard M.;
May, Sean T.;
Low, Eng-Ti Leslie

Publication type:

Article

The response of transgenic Brassica species to salt stress: a review.

Published in:

Biotechnology Letters, 2018, v. 40, n. 8, p. 1159, doi. 10.1007/s10529-018-2570-z

By:

Shah, Nadil;
Anwar, Sumera;
Xu, Jingjing;
Hou, Zhaoke;
Salah, Akram;
Khan, Shahbaz;
Gong, Jianfang;
Shang, Zhengwei;
Qian, Li;
Zhang, Chunyu

Publication type:

Article

Sequence and kinetic analyses of streptokinase from two group G streptococci with high fibrin-dependent plasminogen activities and the identification of novel altered amino acids as potential hot spots.

Published in:

Biotechnology Letters, 2017, v. 39, n. 6, p. 889, doi. 10.1007/s10529-017-2310-9

By:

Keramati, Malihe;
Aslani, Mohammad;
Khatami, Shohreh;
Roohvand, Farzin

Publication type:

Article