Works matching DE "NUCLEOIDS"

Results: 345

TFAM forces mtDNA to make a U-turn.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 11, p. 1179, doi. 10.1038/nsmb.2167

By:

Hallberg, B Martin;
Larsson, Nils-Göran

Publication type:

Article

H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 5, p. 441, doi. 10.1038/nsmb1233

By:

Bouffartigues, Emeline;
Buckle, Malcolm;
Badaut, Cyril;
Travers, Andrew;
Rimsky, Sylvie

Publication type:

Article

Bacterial physiology: Solving the MatP compaction puzzle.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 1, p. 6, doi. 10.1038/nrmicro2932

By:

Kåhrström, Christina Tobin

Publication type:

Article

Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 6, p. 403, doi. 10.1038/nrmicro2578

By:

Fuerst, John A.;
Sagulenko, Evgeny

Publication type:

Article

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 3, p. 185, doi. 10.1038/nrmicro2261

By:

Dillon, Shane C.;
Dorman, Charles J.

Publication type:

Article

H-NS: a universal regulator for a dynamic genome.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 5, p. 391, doi. 10.1038/nrmicro883

By:

Dorman, Charles J.

Publication type:

Article

Assays for mitotic chromosome condensation in live yeast and mammalian cells.

Published in:

Chromosome Research, 2009, v. 17, n. 2, p. 145, doi. 10.1007/s10577-008-9010-1

By:

Gabriel Neurohr;
Daniel Gerlich

Publication type:

Article

Mathematical model for positioning the FtsZ contractile ring in Escherichia coli.

Published in:

Journal of Mathematical Biology, 2014, v. 68, n. 4, p. 911, doi. 10.1007/s00285-013-0652-z

By:

Zhang, Zhigang;
Morgan, Jeffrey;
Lindahl, Paul

Publication type:

Article

NuST: analysis of the interplay between nucleoid organization and gene expression.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1643, doi. 10.1093/bioinformatics/bts201

By:

Scolari, Vittore F.;
Zarei, Mina;
Osella, Matteo;
Cosentino Lagomarsino, Marco

Publication type:

Article

Arabidopsis Seed Mitochondria Are Bioenergetically Active Immediately upon Imbibition and Specialize via Biogenesis in Preparation for Autotrophic Growth.

Published in:

Plant Cell, 2017, v. 29, n. 1, p. 109, doi. 10.1105/tpc.16.00700

By:

Paszkiewicz, Gaël;
Gualberto, José M.;
Benamar, Abdelilah;
Macherel, David;
Logan, David C.

Publication type:

Article

Core of Chloroplast Nucleoids Contains Architectural SWIB Domain Proteins.

Published in:

Plant Cell, 2012, v. 24, n. 7, p. 3060, doi. 10.1105/tpc.112.099721

By:

Melonek, Joanna;
Matros, Andrea;
Trösch, Mirl;
Mock, Hans-Peter;
Krupinska, Karin

Publication type:

Article

Oleic Acid–Dependent Modulation of NITRIC OXIDE ASSOCIATED1 Protein Levels Regulates Nitric Oxide–Mediated Defense Signaling in Arabidopsis.

Published in:

Plant Cell, 2012, v. 24, n. 4, p. 1654, doi. 10.1105/tpc.112.096768

By:

Mandal, Mihir Kumar;
Chandra-Shekara, A.C.;
Jeong, Rae-Dong;
Yu, Keshun;
Zhu, Shifeng;
Chanda, Bidisha;
Navarre, Duroy;
Kachroo, Aardra;
Kachroo, Pradeep

Publication type:

Article

In silico analysis of division times of Escherichia coli populations as a function of the partitioning scheme of non-functional proteins.

Published in:

In Silico Biology, 2012, v. 12, n. 1/2, p. 9, doi. 10.3233/ISB-140462

By:

Gupta, Abhishekh;
Lloyd-Price, Jason;
Ribeiro, Andre S.

Publication type:

Article

ENDOBACTERIA IN THE DIATOM PINNULARIA (BACILLARIOPHYCEAE). I. “SCATTERED ct-NUCLEOIDS” EXPLAINED: DAPI–DNA COMPLEXES STEM FROM EXOPLASTIDIAL BACTERIA BORING INTO THE CHLOROPLASTS1,2.

Published in:

Journal of Phycology, 2003, v. 39, n. 1, p. 122, doi. 10.1046/j.1529-8817.2003.02084.x

By:

Schmid, Anna-Maria M.

Publication type:

Article

The Nordström Question.

Published in:

Life (2075-1729), 2023, v. 13, n. 7, p. 1442, doi. 10.3390/life13071442

By:

Donachie, William D.

Publication type:

Article

Imaging of the Entry Pathway of a Cell-Penetrating Peptide–DNA Complex From the Extracellular Space to Chloroplast Nucleoids Across Multiple Membranes in Arabidopsis Leaves.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.759871

By:

Oikawa, Kazusato;
Tateishi, Ayaka;
Odahara, Masaki;
Kodama, Yutaka;
Numata, Keiji

Publication type:

Article

Real-Time Messenger RNA Dynamics in Bacillus subtilis.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.760857

By:

Sattler, Laura;
Graumann, Peter L.

Publication type:

Article

Oryza sativa ObgC1 Acts as a Key Regulator of DNA Replication and Ribosome Biogenesis in Chloroplast Nucleoids.

Published in:

Rice (19398425), 2021, v. 14, n. 1, p. 1, doi. 10.1186/s12284-021-00498-5

By:

Chen, Ji;
Wang, Li;
Jin, Xiaowan;
Wan, Jian;
Zhang, Lang;
Je, Byoung Il;
Zhao, Ke;
Kong, Fanlei;
Huang, Jin;
Tian, Mengliang

Publication type:

Article

Evaluation of the imputation performance of the program IMPUTE in an admixed sample from Mexico City using several model designs.

Published in:

BMC Medical Genomics, 2012, v. 5, n. 1, p. 12, doi. 10.1186/1755-8794-5-12

By:

Krithika, S;
Valladares-Salgado, Adn;
Peralta, Jesus;
Escobedo-de La Pea, Jorge;
Kumate-Rodriguez, Jesus;
Cruz, Miguel;
Parra, Esteban J

Publication type:

Article

Distribution of mitochondrial DNA nucleoids inside the linear tubules vs. bulk parts of mitochondrial network as visualized by 4Pi microscopy.

Published in:

Journal of Bioenergetics & Biomembranes, 2015, v. 47, n. 3, p. 255, doi. 10.1007/s10863-015-9610-3

By:

Dlasková, Andrea;
Engstová, Hana;
Plecitá - Hlavatá, Lydie;
Lessard, Mark;
Alán, Lukáš;
Reguera, David;
Jabůrek, Martin;
Ježek, Petr

Publication type:

Article

Gene socialization: gene order, GC content and gene silencing inSalmonella.

Published in:

BMC Genomics, 2009, v. 10, p. 597, doi. 10.1186/1471-2164-10-597

By:

Papanikolaou, Nikolas;
Trachana, Kalliopi;
Theodosiou, Theodosios;
Promponas, Vasilis J.;
Iliopoulos, Ioannis

Publication type:

Article

Analyzing stochastic transcription to elucidate the nucleoid's organization.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-125

By:

Riva, Alessandra;
Carpentier, Anne-Sophie;
Barloy-Hubler, Frédérique;
Chéron, Angélique;
Hénaut, Alain

Publication type:

Article

Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data.

Published in:

BMC Genomics, 2005, v. 6, p. 1, doi. 10.1186/1471-2164-6-84

By:

Carpentier, Anne-Sophie;
Torrésani, Bruno;
Grossmann, Alex;
Hénaut, Alain

Publication type:

Article

Virulence Regulator EspR of Mycobacterium tuberculosis Is a Nucleoid-Associated Protein.

Published in:

PLoS Pathogens, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.ppat.1002621

By:

Blasco, Benjamin;
Chen, Jeffrey M.;
Hartkoorn, Ruben;
Sala, Claudia;
Uplekar, Swapna;
Rougemont, Jacques;
Pojer, Florence;
Cole, Stewart T.

Publication type:

Article

TFAM overexpression reduces pathological cardiac remodeling.

Published in:

Molecular & Cellular Biochemistry, 2019, v. 454, n. 1/2, p. 139, doi. 10.1007/s11010-018-3459-9

By:

Kunkel, George H.;
Kunkel, Christopher J.;
Ozuna, Hazel;
Miralda, Irina;
Tyagi, Suresh C.

Publication type:

Article

Protect and regulate: Recent findings on plant POT1-like proteins.

Published in:

Biologia Plantarum, 2009, v. 53, n. 1, p. 1

By:

G. RotkovÃ¡

Publication type:

Article

Mitochondrial DNA stress primes the antiviral innate immune response.

Published in:

Nature, 2015, v. 520, n. 7548, p. 553, doi. 10.1038/nature14156

By:

West, A. Phillip;
Khoury-Hanold, William;
Staron, Matthew;
Tal, Michal C.;
Pineda, Cristiana M.;
Lang, Sabine M.;
Bestwick, Megan;
Duguay, Brett A.;
Raimundo, Nuno;
MacDuff, Donna A.;
Kaech, Susan M.;
Smiley, James R.;
Means, Robert E.;
Iwasaki, Akiko;
Shadel, Gerald S.

Publication type:

Article

Mitochondrial nucleoids maintain genetic autonomy but allow for functional complementation.

Published in:

Journal of Cell Biology, 2008, v. 181, n. 7, p. 1117, doi. 10.1083/jcb.200712101

By:

Gilkerson, Robert W.;
Hernandez, Evelyn;
Davidson, Mercy M.;
Schon, Eric A.

Publication type:

Article

Mitochondrial DNA stays home.

Published in:

Journal of Cell Biology, 2008, v. 181, n. 7, p. 1043, doi. 10.1083/jcb.1817iti3

By:

Leslie, Mitch

Publication type:

Article

The AAA+ protein ATAD3 has displacement loop binding properties and is involved in mitochondrial nucleoid organization.

Published in:

Journal of Cell Biology, 2007, v. 176, n. 2, p. 141, doi. 10.1083/jcb.200609158

By:

He, Jiuya;
Mao, Chih-Chieh;
Reyes, Aurelio;
Sembongi, Hiroshi;
Di Re, Miriam;
Granycome, Caroline;
Clippingdale, Andrew B.;
Fearnley, Ian M.;
Harbour, Michael;
Robinson, Alan J.;
Reichelt, Stefanie;
Spelbrink, Johannes N.;
Walker, John E.;
Holt, Ian J.

Publication type:

Article

Mmm2p, a mitochondrial outer membrane protein required for yeast mitochondrial shape and maintenance of mtDNA nucleoids.

Published in:

Journal of Cell Biology, 2004, v. 164, n. 5, p. 677, doi. 10.1083/jcb.200308012

By:

Youngman, Matthew J.;
Aiken Hobbs, Alyson E.;
Burgess, Shawn M.;
Srinivasan, Maithreyan;
Jensen, Robert E.

Publication type:

Article

Noc-ing out division.

Published in:: Journal of Cell Biology, 2004, v. 164, n. 4, p. 480
Publication type:: Article

Crystal structure of the nucleoid‐associated protein Fis (PA4853) from Pseudomonas aeruginosa.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2020, v. 76, n. 5, p. 209, doi. 10.1107/S2053230X20005427

By:

Zhou, Juan;
Gao, Zengqiang;
Zhang, Heng;
Dong, Yuhui

Publication type:

Article

Further confirmation of the presence of DNA in the pyrenoid core of the siphonous green algal genus Caulerpa (Caulerpales, Ulvophycease, Chlorophyta).

Published in:

Phycological Research, 1995, v. 43, n. 2, p. 101, doi. 10.1111/j.1440-1835.1995.tb00010.x

By:

Miyamura, Shinichi;
Hori, Terumitsu

Publication type:

Article

Semi-in vitro detection of Mg2+-dependent DNase that specifically digest mitochondrial nucleoids in the zygote of Physarum polycephalum.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-06920-2

By:

Urakawa, Naoki;
Nakamura, Satoru;
Kishimoto, Mariko;
Moriyama, Yohsuke;
Kawano, Shigeyuki;
Higashiyama, Tetsuya;
Sasaki, Narie

Publication type:

Article

A new automated tool to quantify nucleoid distribution within mitochondrial networks.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-01987-9

By:

Ilamathi, Hema Saranya;
Ouellet, Mathieu;
Sabouny, Rasha;
Desrochers-Goyette, Justine;
Lines, Matthew A.;
Pfeffer, Gerald;
Shutt, Timothy E.;
Germain, Marc

Publication type:

Article

Delaunay algorithm and principal component analysis for 3D visualization of mitochondrial DNA nucleoids by Biplane FPALM/dSTORM.

Published in:

European Biophysics Journal, 2016, v. 45, n. 5, p. 443, doi. 10.1007/s00249-016-1114-5

By:

Alán, Lukáš;
Špaček, Tomáš;
Ježek, Petr

Publication type:

Article

Probing bacterial nucleoid structure with optical tweezers.

Published in:

BioEssays, 2007, v. 29, n. 3, p. 212, doi. 10.1002/bies.20542

By:

Dorman, Charles J.

Publication type:

Article

Functional organization of mammalian mitochondrial DNA in nucleoids: History, recent developments, and future challenges.

Published in:

IUBMB Life, 2010, v. 62, n. 1, p. 19, doi. 10.1002/iub.282

By:

Spelbrink, Johannes N.

Publication type:

Article

ParAB Partition Dynamics in Firmicutes: Nucleoid Bound ParA Captures and Tethers ParB-Plasmid Complexes.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0131943

By:

Lioy, Virginia S.;
Volante, Andrea;
Soberón, Nora E.;
Lurz, Rudi;
Ayora, Silvia;
Alonso, Juan C.

Publication type:

Article

The Nucleoid Occlusion SlmA Protein Accelerates the Disassembly of the FtsZ Protein Polymers without Affecting Their GTPase Activity.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126434

By:

Cabré, Elisa J.;
Monterroso, Begoña;
Alfonso, Carlos;
Sánchez-Gorostiaga, Alicia;
Reija, Belén;
Jiménez, Mercedes;
Vicente, Miguel;
Zorrilla, Silvia;
Rivas, Germán

Publication type:

Article

Whole Cell Formaldehyde Cross-Linking Simplifies Purification of Mitochondrial Nucleoids and Associated Proteins Involved in Mitochondrial Gene Expression.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0116726

By:

Rajala, Nina;
Hensen, Fenna;
Wessels, Hans J. C. T.;
Ives, Daniel;
Gloerich, Jolein;
Spelbrink, Johannes N.

Publication type:

Article

Single-Molecule Study on Histone-Like Nucleoid-Structuring Protein (H-NS) Paralogue in Pseudomonas aeruginosa: MvaU Bears DNA Organization Mode Similarities to MvaT.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112246

By:

Winardhi, Ricksen S.;
Castang, Sandra;
Dove, Simon L.;
Yan, Jie

Publication type:

Article

Correction: FtsZ Placement in Nucleoid-Free Bacteria.

Published in:: PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0101849
Publication type:: Article

Isolation and Validation of an Endogenous Fluorescent Nucleoid Reporter in Salmonella Typhimurium.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093785

By:

Passaris, Ioannis;
Ghosh, Anirban;
Cenens, William;
Michiels, Chris W.;
Lammertyn, Jeroen;
Aertsen, Abram

Publication type:

Article

FtsZ Placement in Nucleoid-Free Bacteria.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0091984

By:

Pazos, Manuel;
Casanova, Mercedes;
Palacios, Pilar;
Margolin, William;
Natale, Paolo;
Vicente, Miguel

Publication type:

Article

Investigating the Interplay between Nucleoid-Associated Proteins, DNA Curvature, and CRISPR Elements Using Comparative Genomics.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090940

By:

Tong, Hao;
Mrázek, Jan

Publication type:

Article

Transmission of an Oxygen Availability Signal at the Salmonella enterica Serovar Typhimurium fis Promoter.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0084382

By:

Cameron, Andrew D. S.;
Kröger, Carsten;
Quinn, Heather J.;
Scally, Isobel K.;
Daly, Anne J.;
Kary, Stefani C.;
Dorman, Charles J.

Publication type:

Article

The Fis Protein Has a Stimulating Role in Initiation of Replication inEscherichia coli In Vivo.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0083562

By:

Flåtten, Ingvild;
Skarstad, Kirsten

Publication type:

Article

Atomic Force Microscopy Analysis of the Role of Major DNA-Binding Proteins in Organization of the Nucleoid in Escherichia coli.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072954

By:

Ohniwa, Ryosuke L.;
Muchaku, Hiroki;
Saito, Shinji;
Wada, Chieko;
Morikawa, Kazuya

Publication type:

Article