Works matching DE "NON-coding DNA"

Results: 532

The future of reproductive medicine with an expanding toolkit: completion of the human reference genome.

Published in:

2022

By:

Albertini, David F.

Publication type:

Editorial

Decreased expression of TERT and telomeric proteins as human ovaries age may cause telomere shortening.

Published in:

Journal of Assisted Reproduction & Genetics, 2021, v. 38, n. 2, p. 429, doi. 10.1007/s10815-020-01932-1

By:

Uysal, Fatma;
Kosebent, Esra Gozde;
Toru, Havva Serap;
Ozturk, Saffet

Publication type:

Article

Repetitive DNA in eukaryotic genomes.

Published in:

Chromosome Research, 2015, v. 23, n. 3, p. 415, doi. 10.1007/s10577-015-9499-z

By:

Biscotti, Maria;
Olmo, Ettore;
Heslop-Harrison, J.

Publication type:

Article

Phylogenetic relationship in Actinidia (Actinidiaceae) based on four noncoding chloroplast DNA sequences.

Published in:

Plant Systematics & Evolution, 2019, v. 305, n. 9, p. 787, doi. 10.1007/s00606-019-01607-0

By:

Tang, Ping;
Xu, Qiang;
Shen, Ruinan;
Yao, Xiaohong

Publication type:

Article

Phylogenetic utility of the trnH- psbA IGR and stem-loop diversity of the 3′ UTR in Cactaceae (Caryophyllales).

Published in:

Plant Systematics & Evolution, 2017, v. 303, n. 3, p. 299, doi. 10.1007/s00606-016-1372-9

By:

Hernández-Ledesma, Patricia;
Bárcenas, Rolando

Publication type:

Article

FATHMM-XF: accurate prediction of pathogenic point mutations via extended features.

Published in:

Bioinformatics, 2018, v. 34, n. 3, p. 511, doi. 10.1093/bioinformatics/btx536

By:

Rogers, Mark F;
Shihab, Hashem A;
Mort, Matthew;
Cooper, David N;
Gaunt, Tom R;
Campbell, Colin

Publication type:

Article

LncRNA/DNA binding analysis reveals losses and gains and lineage specificity of genomic imprinting in mammals.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1431, doi. 10.1093/bioinformatics/btw818

By:

Haihua Liu;
Xiaoxiao Shang;
Hao Zhu

Publication type:

Article

ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3327, doi. 10.1093/bioinformatics/btw393

By:

Weinmaier, Thomas;
Platzer, Alexander;
Frank, Jeroen;
Hellinger, Hans-Jörg;
Tischler, Patrick;
Rattei, Thomas

Publication type:

Article

Predicting regulatory variants with composite statistic.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2729, doi. 10.1093/bioinformatics/btw288

By:

Jiexing Wu;
Mulin Jun Li;
Liu, Jun S.;
Panwen Wang;
Feng Xu;
Zhicheng Pan;
Pak Chung Sham;
Miaoxin Li;
Zipeng Liu;
Yun Zhu;
Junwen Wang;
Zhengyuan Xia;
Kocher, Jean-Pierre A.

Publication type:

Article

Tools4miRs - one place to gather all the tools for miRNA analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2722, doi. 10.1093/bioinformatics/btw189

By:

Lukasik, Anna;
Wójcikowski, Maciej;
Zielenkiewicz, Piotr

Publication type:

Article

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2411, doi. 10.1093/bioinformatics/btw186

By:

Bin Liu;
Ren Long;
Kuo-Chen Chou

Publication type:

Article

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3758, doi. 10.1093/bioinformatics/btv466

By:

De Witte, Dieter;
Van de Velde, Jan;
Decap, Dries;
Van Bel, Michiel;
Audenaert, Pieter;
Demeester, Piet;
Dhoedt, Bart;
Vandepoele, Klaas;
Fostier, Jan

Publication type:

Article

motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3847, doi. 10.1093/bioinformatics/btv470

By:

Coetzee, Simon G.;
Coetzee, Gerhard A.;
Hazelett, Dennis J.

Publication type:

Article

A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3445, doi. 10.1093/bioinformatics/btv391

By:

Jichen Yang;
Ramsey, Stephen A.

Publication type:

Article

An integrative approach to predicting the functional effects of non-coding and coding sequence variation.

Published in:

Bioinformatics, 2015, v. 31, n. 10, p. 1536, doi. 10.1093/bioinformatics/btv009

By:

Shihab, Hashem A.;
Rogers, Mark F.;
Gough, Julian;
Mort, Matthew;
Cooper, David N.;
Day, Ian N. M.;
Gaunt, Tom R.;
Campbell, Colin

Publication type:

Article

Towards a piRNA prediction using multiple kernel fusion and support vector machine.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i364, doi. 10.1093/bioinformatics/btu441

By:

Brayet, Jocelyn;
Zehraoui, Farida;
Jeanson-Leh, Laurence;
Israeli, David;
Tahi, Fariza

Publication type:

Article

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.

Published in:

Bioinformatics, 2013, v. 29, n. 17, p. 2197, doi. 10.1093/bioinformatics/btt356

By:

Barenboim, Maxim;
Manke, Thomas

Publication type:

Article

Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i395, doi. 10.1093/bioinformatics/bts400

By:

Dimitrieva, Slavica;
Bucher, Philipp

Publication type:

Article

Determination of regulatory motifs and pathogenicity of intronic variants of GNPTAB, GNPTG, and NAGPA genes in individuals with stuttering.

Published in:

Bulletin of the National Research Centre, 2022, v. 46, n. 1, p. 1, doi. 10.1186/s42269-022-00971-1

By:

Sylvester, Charles;
Kundapur, Rajesh;
Maruthy, Santosh

Publication type:

Article

Disease genomics: Triaging risk variants in the non-coding genome.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 12, p. 779, doi. 10.1038/nrg3862

By:

Koch, Linda

Publication type:

Article

Cancer genomics: Non-coding mutations in the driver seat.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 9, p. 574, doi. 10.1038/nrg3801

By:

Koch, Linda

Publication type:

Article

Scarcity of Recurrent Regulatory Driver Mutations in Colorectal Cancer Revealed by Targeted Deep Sequencing.

Published in:

JNCI Cancer Spectrum, 2019, v. 3, n. 2, p. N.PAG, doi. 10.1093/jncics/pkz012

By:

Poulos, Rebecca C;
Perera, Dilmi;
Packham, Deborah;
Shah, Anushi;
Janitz, Caroline;
Pimanda, John E;
Hawkins, Nicholas;
Ward, Robyn L;
Hesson, Luke B;
Wong, Jason W H

Publication type:

Article

Taxonomical and genetics characterization of family Boraginaceae grown in Elba Mountain.

Published in:

Egyptian Journal of Experimental Biology (Botany), 2022, v. 18, n. 2, p. 225, doi. 10.5455/egyjebb.20220729121826

By:

Elsherbeny, Esraa A.

Publication type:

Article

New Approach to the Systematics of the Section Psammiris (Iris , Iridaceae): What Does Chloroplast DNA Sequence Tell Us?

Published in:

Plants (2223-7747), 2023, v. 12, n. 6, p. 1254, doi. 10.3390/plants12061254

By:

Boltenkov, Eugeny V.;
Artyukova, Elena V.

Publication type:

Article

Genetic Redundancy in Rye Shows in a Variety of Ways †.

Published in:

Plants (2223-7747), 2023, v. 12, n. 2, p. 282, doi. 10.3390/plants12020282

By:

Vershinin, Alexander V.;
Elisafenko, Evgeny A.;
Evtushenko, Elena V.

Publication type:

Article

Evolutionary Trends in the Mitochondrial Genome of Archaeplastida: How Does the GC Bias Affect the Transition from Water to Land?

Published in:

Plants (2223-7747), 2020, v. 9, n. 3, p. 358, doi. 10.3390/plants9030358

By:

Pedrola-Monfort, Joan;
Lázaro-Gimeno, David;
Boluda, Carlos G.;
Pedrola, Laia;
Garmendia, Alfonso;
Soler, Carla;
Soriano, Jose M.

Publication type:

Article

Swept Away: Protein Mobility in the Phloem.

Published in:

Plant Cell, 2016, v. 28, n. 9, p. 1990, doi. 10.1105/tpc.16.00722

By:

Mach, Jennifer

Publication type:

Article

Biological Function of MicroRNA193a-3p in Health and Disease.

Published in:

International Journal of Genomics, 2017, p. 1, doi. 10.1155/2017/5913195

By:

Grossi, Ilaria;
Salvi, Alessandro;
Abeni, Edoardo;
Marchina, Eleonora;
De Petro, Giuseppina

Publication type:

Article

HUMAN ERRORS.

Published in:

2018

By:

Charlwood, Jacques Derek

Publication type:

Book Review

Epigenetic modulation associated with carcinogenesis and prognosis of human gastric cancer (Review).

Published in:

Oncology Letters, 2017, v. 13, n. 5, p. 3363, doi. 10.3892/ol.2017.5912

By:

FUMINORI SONOHARA;
YOSHIKUNI INOKAWA;
MASAMICHI HAYASHI;
YASUHIRO KODERA;
SHUJI NOMOTO

Publication type:

Article

Human endogenous retrovirus regulates the initiation and progression of cancers (Review).

Published in:

Molecular & Clinical Oncology, 2022, v. 17, n. 4, p. 1, doi. 10.3892/mco.2022.2576

By:

SAHU, SRISHTI;
SINGH, BHARAT;
RAI, AMBAK KUMAR

Publication type:

Article

Chloroplast DNA variation in a hyperdiverse tropical tree community.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 8, p. 4897, doi. 10.1002/ece3.5096

By:

Caron, Henri;
Molino, Jean‐François;
Sabatier, Daniel;
Léger, Patrick;
Chaumeil, Philippe;
Scotti‐Saintagne, Caroline;
Frigério, Jean‐Marc;
Scotti, Ivan;
Franc, Alain;
Petit, Rémy J.

Publication type:

Article

Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 7, p. 4245, doi. 10.1002/ece3.5056

By:

Pogoda, Cloe S.;
Keepers, Kyle G.;
Nadiadi, Arif Y.;
Bailey, Dustin W.;
Lendemer, James C.;
Tripp, Erin A.;
Kane, Nolan C.

Publication type:

Article

New Set of EST-STR Markers for Discrimination of Related Papaver somniferum L. Varieties.

Published in:

Life (2075-1729), 2024, v. 14, n. 1, p. 72, doi. 10.3390/life14010072

By:

Kaňuková, Šarlota;
Ondreičková, Katarína;
Mihálik, Daniel;
Kraic, Ján

Publication type:

Article

Miswired Proprioception in Amyotrophic Lateral Sclerosis in Relation to Pain Sensation (and in Delayed Onset Muscle Soreness)—Is Piezo2 Channelopathy a Principal Transcription Activator in Proprioceptive Terminals Besides Being the Potential Primary Damage?

Published in:

Life (2075-1729), 2023, v. 13, n. 3, p. 657, doi. 10.3390/life13030657

By:

Sonkodi, Balázs

Publication type:

Article

Power and Weakness of Repetition – Evaluating the Phylogenetic Signal From Repeatomes in the Family Rosaceae With Two Case Studies From Genera Prone to Polyploidy and Hybridization (Rosa and Fragaria).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.738119

By:

Herklotz, Veit;
Kovařík, Aleš;
Wissemann, Volker;
Lunerová, Jana;
Vozárová, Radka;
Buschmann, Sebastian;
Olbricht, Klaus;
Groth, Marco;
Ritz, Christiane M.

Publication type:

Article

Highly Diverse Shrub Willows (Salix L.) Share Highly Similar Plastomes.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.662715

By:

Wagner, Natascha D.;
Volf, Martin;
Hörandl, Elvira

Publication type:

Article

Targeting Cis -Regulatory Elements for Rice Grain Quality Improvement.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.705834

By:

Ding, Yu;
Zhu, Jiannan;
Zhao, Dongsheng;
Liu, Qiaoquan;
Yang, Qingqing;
Zhang, Tao

Publication type:

Article

Junk DNA and the long non-coding RNA twist in cancer genetics.

Published in:

Oncogene, 2015, v. 34, n. 39, p. 5003, doi. 10.1038/onc.2014.456

By:

Ling, H;
Vincent, K;
Pichler, M;
Fodde, R;
Berindan-Neagoe, I;
Slack, F J;
Calin, G A

Publication type:

Article

When junk DNA turns functional: transposon-derived non-coding RNAs in plants.

Published in:

Journal of Experimental Botany, 2021, v. 72, n. 11, p. 4132, doi. 10.1093/jxb/erab073

By:

Ariel, Federico D;
Manavella, Pablo A

Publication type:

Article

Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea.

Published in:

Journal of Experimental Botany, 2015, v. 66, n. 5, p. 1271, doi. 10.1093/jxb/eru478

By:

Bajaj, Deepak;
Saxena, Maneesha S.;
Kujur, Alice;
Das, Shouvik;
Badoni, Saurabh;
Tripathi, Shailesh;
Upadhyaya, Hari D.;
Gowda, C. L. L.;
Sharma, Shivali;
Singh, Sube;
Tyagi, Akhilesh K.;
Parida, Swarup K.

Publication type:

Article

Foundational Falsehoods of Creationism.

Published in:

Creation Research Society Quarterly, 2019, v. 55, n. 4, p. 258

By:

Bergman, Jerry

Publication type:

Article

Extreme Information: Biocomplexity of Interlocking Genome Languages.

Published in:

Creation Research Society Quarterly, 2015, v. 51, n. 3, p. 186

By:

Tomkins, Jeffrey P.

Publication type:

Article

Effects of Genetics on Oral Health.

Published in:

IDA Times, 2020, v. 16, n. 1, p. 20

By:

Jain, Aditi

Publication type:

Article

Editorial for the Special Issue "Satellite DNA Genomics".

Published in:

2024

By:

Garrido-Ramos, Manuel A.;
Plohl, Miroslav;
Šatović-Vukšić, Eva

Publication type:

Editorial

The Satellite DNA PcH-Sat, Isolated and Characterized in the Limpet Patella caerulea (Mollusca, Gastropoda), Suggests the Origin from a Nin-SINE Transposable Element.

Published in:

Genes, 2024, v. 15, n. 5, p. 541, doi. 10.3390/genes15050541

By:

Petraccioli, Agnese;
Maio, Nicola;
Carotenuto, Rosa;
Odierna, Gaetano;
Guarino, Fabio Maria

Publication type:

Article

PromGER: Promoter Prediction Based on Graph Embedding and Ensemble Learning for Eukaryotic Sequence.

Published in:

Genes, 2023, v. 14, n. 7, p. 1441, doi. 10.3390/genes14071441

By:

Wang, Yan;
Tai, Shiwen;
Zhang, Shuangquan;
Sheng, Nan;
Xie, Xuping

Publication type:

Article

Satellite DNAs—From Localized to Highly Dispersed Genome Components.

Published in:

Genes, 2023, v. 14, n. 3, p. 742, doi. 10.3390/genes14030742

By:

Šatović-Vukšić, Eva;
Plohl, Miroslav

Publication type:

Article

3D Genome Plasticity in Normal and Diseased Neurodevelopment.

Published in:

Genes, 2022, v. 13, n. 11, p. 1999, doi. 10.3390/genes13111999

By:

Plaza-Jennings, Amara;
Valada, Aditi;
Akbarian, Schahram

Publication type:

Article

General Designs Reveal Distinct Codes in Protein-Coding and Non-Coding Human DNA.

Published in:

Genes, 2022, v. 13, n. 11, p. 1970, doi. 10.3390/genes13111970

By:

Cohen, Dana

Publication type:

Article