Works matching DE "MULTIOMICS"

Results: 1886

Multi-omics uncover acute stress vulnerability through gut-hypothalamic communication in ducks.

Published in:

British Poultry Science, 2025, v. 66, n. 4, p. 479, doi. 10.1080/00071668.2025.2454960

By:

Gu, T.;
Guo, R.;
Chen, L.;
Zong, Y.;
Tian, Y.;
Xu, W.;
Zeng, T.;
Lu, L.

Publication type:

Article

Can the tumor neural niche be targeted to re-program cancer?

Published in:

PLoS Biology, 2025, v. 23, n. 7, p. 1, doi. 10.1371/journal.pbio.3003266

By:

Sloan, Erica K.;
Lee, Joo Sang

Publication type:

Article

Integrative multi-omics and machine learning reveal critical functions of proliferating cells in prognosis and personalized treatment of lung adenocarcinoma.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-01027-z

By:

Wang, Shun;
Hu, Dingtao;
Wang, Ruohuang;
Huang, Jie;
Wang, Baoqing

Publication type:

Article

Multi-omics dissection of tumor microenvironment-mediated drug resistance: mechanisms and therapeutic reprogramming.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1634413

By:

Chen, Fanghua;
Fu, Yuandong;
Bai, Gaigai;
Qiu, Junjun;
Hua, Keqin

Publication type:

Article

Exploring the additive antibacterial potential of Cinnamomum cassia volatile oil and imipenem against Acinetobacter baumannii : a multi-omics investigation.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1578322

By:

Lu, Youyuan;
Xu, Wanlin;
Xue, Jiahui;
Xie, Mingxia;
Liu, Haotian;
Wang, Ruilin;
Li, Gang;
Wang, Hanqing

Publication type:

Article

Single-cell technologies and spatial transcriptomics: decoding immune low - response states in endometrial cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1636483

By:

Li, Yumeng;
Qiu, Hua;
Zhao, Zhenzhen;
Qi, Fanghua;
Cai, Pingping

Publication type:

Article

Multi-omics analysis reveals glutathione metabolism-related immune suppression and constructs a prognostic model in lung adenocarcinoma.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1608407

By:

Chi, Yuxiang;
Ma, Guoyuan;
Liu, Qiang;
Xiang, Yunzhi;
Liu, Defeng;
Du, Jiajun

Publication type:

Article

A densely connected framework for cancer subtype classification.

Published in:

2025

By:

Li, Yu;
Zheng, Denggao;
Sun, Kaijie;
Qin, Chi;
Duan, Yuchen;
Zhou, Qingqing;
Yin, Yunxia;
Kan, Hongxing;
Hu, Jili

Publication type:

Conference Paper/Materials

Multi-omics Integrative Analysis for Incomplete Data Using Weighted p-Value Adjustment Approaches.

Published in:

Journal of Agricultural, Biological & Environmental Statistics (JABES), 2025, v. 30, n. 3, p. 601, doi. 10.1007/s13253-024-00603-3

By:

Zhang, Wenda;
Ma, Zichen;
Ho, Yen-Yi;
Yang, Shuyi;
Habiger, Joshua;
Huang, Hsin-Hsiung;
Huang, Yufei

Publication type:

Article

Multi-omics analysis for identifying cell-type-specific and bulk-level druggable targets in Alzheimer's disease.

Published in:

Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06739-1

By:

Liu, Shiwei;
Cho, Minyoung;
Huang, Yen-Ning;
Park, Tamina;
Chaudhuri, Soumilee;
Rosewood, Thea J.;
Bice, Paula J.;
Chung, Dongjun;
Bennett, David A.;
Ertekin-Taner, Nilüfer;
Saykin, Andrew J.;
Nho, Kwangsik

Publication type:

Article

Analyses of the mechanism and therapeutic targets of senescence related genes in ischemic stroke with multi-omics approach.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-10367-6

By:

Li, Nanding;
Jing, Shanquan;
An, Kang;
Jia, Bo;
Han, Yingjie;
Wang, Zan;
Li, Chengcai;
Li, Xiaole;
Wang, Jiwei;
Liu, Wei;
Li, Conghui

Publication type:

Article

Evaluating the impact of machine learning models on adult major depressive disorder using conventional treatment strategies: a systematic review approach.

Published in:

Discover Public Health, 2025, p. 1, doi. 10.1186/s12982-025-00816-y

By:

Yadav, Nishant;
Gulati, Anamika;
Gulati, Varun;
Yadav, Prashant

Publication type:

Article

Multi-omics reveal the neuroprotective mechanisms of Xinshubao tablet against scopolamine-induced cognitive dysfunction in mice.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1596728

By:

Yang, Zhe;
Zhang, Feng-Rong;
Ren, Lu;
Bai, Jia-Ming;
Wang, Shi-Cong;
Li, Xian-Yu;
Yang, Hong-Jun;
Xiao, Hong-He

Publication type:

Article

Multi-omics analysis of the anti-cancer effects of curcumol in endometrial carcinoma.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1565959

By:

Xie, Jumin;
Zhu, Ying;
Bai, Haozhen;
Song, Zean;
Qiu, Shukai;
Xie, Youyi;
Wan, Shuqiong

Publication type:

Article

Analysis of immune cell infiltration in the tumor microenvironment of cervical cancer and its impact on immunotherapy.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1608597

By:

Qin, Fei;
Huan, Lu;
Shi, Xia;
Hua, Yuanyuan;
Wu, Yi

Publication type:

Article

Dysbiosis and genomic plasticity in the oily scalp microbiome: a multi-omics analysis of dandruff pathogenesis.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1595030

By:

Yu, Han;
Li, Jiayi;
Wang, Yan;
Zhang, Tongze;
Mehmood, Tahir;
Habimana, Olivier

Publication type:

Article

Integrated multiomics analysis identifies PHLDA1+ fibroblasts as prognostic biomarkers and mediators of biological functions in pancreatic cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1592416

By:

Wang, Rui;
Qin, Guan-Hua;
Jiang, Yifei;
Chen, Fu-Xiang;
Wang, Zi-Han;
Ju, Lin-Ling;
Chen, Lin;
Fu, Da;
Liu, En-Yu;
Zhang, Su-Qing;
Cai, Wei-Hua

Publication type:

Article

Editorial: Multi-omics and molecular biology studies on abiotic stress in crops.

Published in:

2025

By:

Luo, Xiaobo;
Ntatsi, Georgia;
Zhou, Rong;
Sun, Mintao

Publication type:

Editorial

一种面向功能基因挖掘的动物多组学数据集.

Published in:

Journal of Agricultural Big Data, 2025, v. 8, n. 1, p. 96, doi. 10.19788/j.issn.2096-6369.100039

By:

刘洪;
窦婧文;
王越;
廖勇;
刘小磊;
李新云;
赵书红;
付玉华

Publication type:

Article

Label-free isolation of lipid-rich Saccharomyces cerevisiae mutant by high-throughput flow-mode Raman-activated cell sorting and multi-omics analysis for uncovering the mechanism of enhanced lipid accumulation.

Published in:

Biotechnology for Biofuels & Bioproducts, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13068-025-02677-8

By:

Ji, Xiaotong;
Wang, Xixian;
Zhou, Wenjun;
Chen, Lin;
Liu, Tianzhong;
Xu, Jian;
Ma, Bo

Publication type:

Article

Multi-omics analyses the effect of Bifidobacterium longum subsp. longum BL21 supplementation on overweight and obese subjects: a randomized, double-blind, placebo-controlled study.

Published in:

Nutrition & Metabolism, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12986-025-00969-2

By:

Wang, Xiaoya;
Xing, Zefeng;
Wang, Rui;
Zhang, Guoming;
Liu, Guodong;
Li, Zhen;
Li, Lixiang

Publication type:

Article

Integrative spatial omics reveals distinct tumor-promoting multicellular niches and immunosuppressive mechanisms in Black American and White American patients with TNBC.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61034-3

By:

Zhu, Qian;
Balasubramanian, Akhila;
Asirvatham, Jaya Ruth;
Chatterjee, Megha;
Piyarathna, Badrajee;
Kaur, Jaspreet;
Mohamed, Nada;
Wu, Ling;
Wang, Stacy;
Pourfarrokh, Niloufar;
Binsol, Paula Danika;
Bhargava, Mahak;
Rasaily, Uttam;
Xu, Yitian;
Zheng, Junjun;
Jebakumar, Deborah;
Rao, Arundhati;
Gutierrez, Carolina;
Omilian, Angela R.;
Morrison, Carl

Publication type:

Article

Integrated Transcriptomic, Proteomic, and Metabolomic Analyses Reveal Mechanisms Underlying Day–Night Differences in Carbohydrate Metabolism between Diploid and Tetraploid Rice.

Published in:

Rice (19398425), 2025, v. 18, n. 1, p. 1, doi. 10.1186/s12284-025-00826-z

By:

Meng, Weilong;
Liu, Yuchen;
Zhang, Changjiang;
Zhan, Xiaohong;
Wang, Yingkai;
Yu, Xinfang;
Zhang, Chunying;
Wang, Ningning;
Ma, Jian

Publication type:

Article

Integrating multi-omics and machine learning strategies to explore the "gene-protein-metabolite" network in ischemic heart failure with Qi deficiency and blood stasis syndrome.

Published in:

Chinese Medicine, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13020-025-01151-9

By:

Wei, Jingjing;
Wang, Aolong;
Yu, Peng;
Sun, Yang;
Wu, Wenjun;
Zhang, Yilin;
Yu, Rui;
Li, Bin;
Zhu, Mingjun

Publication type:

Article

A LINC00472-encoded polypeptide impedes migration and proliferation through modulation of the HDAC2/SP1 axis in non-small cell lung cancer cells.

Published in:

Cancer Cell International, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12935-025-03901-z

By:

Xu, Lei;
Kuang, Haoyong;
Peng, Haodong;
Wu, Sen;
Bai, Yu;
Jia, Xiangbo;
Yao, Wenjian

Publication type:

Article

Decision level scheme for fusing multiomics and histology slide images using deep neural network for tumor prognosis prediction.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-09869-0

By:

Zhao, Tingting;
Ren, Yongyong;
Lu, Hui;
Kong, Yan

Publication type:

Article

Synthetic data generation in genomic cancer medicine: a review of global research trends in the last ten years.

Published in:

Discover Artificial Intelligence, 2025, v. 5, n. 1, p. 1, doi. 10.1007/s44163-025-00384-9

By:

De Nicoló, Valentina;
Frasca, Maria;
Graziosi, Agnese;
Gazzaniga, Gianluca;
Torre, Davide La;
Pani, Arianna

Publication type:

Article

Unveiling the anticancer potential of flavonoids in hepatocellular carcinoma through microbiome and spatially resolved metabolomics analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03159-x

By:

You, Lina;
Huang, WuKui;
Chen, ShuYing

Publication type:

Article

Exploring the role of PANoptosis related genes in the prognosis of oral squamous cell carcinoma subtypes based on multi-omics analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03154-2

By:

Liu, Yang;
Wen, Lingdu;
Yan, Lijuan;
Cui, Zifeng

Publication type:

Article

Application of Deep Learning for Single Cell Multi-Omics: A State-of-the-Art Review.

Published in:

Archives of Computational Methods in Engineering, 2025, v. 32, n. 5, p. 2987, doi. 10.1007/s11831-025-10230-x

By:

Wani, Shahid Ahmad;
Khan, Sumeer Ahmad;
Quadri, SMK

Publication type:

Article

Acupuncture promotes muscle cells ATP metabolism in ST36 acupoint local exerting effect by activating TRPV1/CaMKII/AMPK/PGC1α signaling pathway.

Published in:

Chinese Medicine, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13020-025-01169-z

By:

Chen, Zhihan;
Yao, Kaifang;
Wang, Xinrui;
Liu, Yangyang;
Du, Simin;
Wang, Shenjun;
Fang, Yuxin;
Xu, Yuan;
Xu, Zhifang;
Lin, Xiaowei;
Guo, Yi

Publication type:

Article

Multi-Omics-Based Characterization of DNA Methylation Episignatures for Papillary Thyroid Cancer in a Chinese Population.

Published in:

Thyroid, 2025, v. 35, n. 7, p. 789, doi. 10.1089/thy.2024.0611

By:

Ruan, Xianhui;
Yang, Feng;
Li, Mengling;
Dong, Qiman;
Hao, Weijing;
Zhang, Wei;
Yun, Xinwei;
Li, Dapeng;
Zhao, Jingzhu;
Qin, Xuan;
Rong, Zihan;
Guo, Taiyan;
Wang, Lei;
Pan, Yi;
Gao, Ming;
Zhang, Minjie;
Zheng, Xiangqian

Publication type:

Article

Metabolic engineering of Glarea lozoyensis for high-level production of pneumocandin B<sub>0</sub>.

Published in:

Synthetic & Systems Biotechnology, 2025, v. 10, n. 2, p. 381, doi. 10.1016/j.synbio.2024.12.008

By:

Xinyi Zhang;
Shu Cheng;
Jing Yang;
Li Lu;
Zixin Deng;
Guangkai Bian;
Tiangang Liu

Publication type:

Article

A Newton-based variant of Exclusive Lasso for improved sparse solutions.

Published in:

Computational Statistics, 2025, v. 40, n. 7, p. 3505, doi. 10.1007/s00180-025-01630-5

By:

Ravi, Dayasri;
Groll, Andreas

Publication type:

Article

Revisiting Traditional Medicinal Plants: Integrating Multiomics, In Vitro Culture, and Elicitation to Unlock Bioactive Potential.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2029, doi. 10.3390/plants14132029

By:

Karalija, Erna;
Macanović, Armin;
Ibragić, Saida

Publication type:

Article

Investigating the Mechanisms Underlying Citral-Induced Oxidative Stress and Its Contribution to Antifungal Efficacy on Magnaporthe oryzae Through a Multi-Omics Approach.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2001, doi. 10.3390/plants14132001

By:

Huang, Yonghui;
Wang, Ruoruo;
Tan, Yumei;
Liu, Yongxiang;
Ren, Xiyi;
Guo, Congtao;
Li, Rongyu;
Li, Ming

Publication type:

Article

Exploration of Multi-Source Lignocellulose-Degrading Microbial Resources and Bioaugmentation Strategies: Implications for Rumen Efficiency.

Published in:

Animals (2076-2615), 2025, v. 15, n. 13, p. 1920, doi. 10.3390/ani15131920

By:

Lv, Xiaokang;
Qiao, Zhanhong;
Chen, Chao;
Hua, Jinling;
Zhou, Chuanshe

Publication type:

Article

Unveiling the Regulatory Mechanism of Tibetan Pigs Adipogenesis Mediated by WNT16: From Differential Phenotypes to the Application of Multi-Omics Approaches.

Published in:

Animals (2076-2615), 2025, v. 15, n. 13, p. 1904, doi. 10.3390/ani15131904

By:

Huang, Qiuyan;
Zhang, Kunli;
Meng, Fanming;
Lin, Sen;
Hong, Chun;
Li, Xinming;
Li, Baohong;
Wu, Jie;
Xin, Haiyun;
Hu, Chuanhuo;
Zhu, Xiangxing;
Tang, Dongsheng;
Pei, Yangli;
Wang, Sutian

Publication type:

Article

MORE interpretable multi-omic regulatory networks to characterise phenotypes Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf270

By:

Aguerralde-Martin, Maider;
Clemente-Císcar, Mónica;
Conesa, Ana;
Tarazona, Sonia

Publication type:

Article

SCPline: An interactive framework for the single-cell proteomics data preprocessing Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf256

By:

Guo, Shangwei;
Zhou, Shengming;
Wang, Guohua;
Wang, Fang

Publication type:

Article

I-SVVS: integrative stochastic variational variable selection to explore joint patterns of multi-omics microbiome data Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf132

By:

Dang, Tung;
Fuji, Yushiro;
Kumaishi, Kie;
Usui, Erika;
Kobori, Shungo;
Sato, Takumi;
Narukawa, Megumi;
Toda, Yusuke;
Sakurai, Kengo;
Yamasaki, Yuji;
Tsujimoto, Hisashi;
Hirai, Masami Yokota;
Ichihashi, Yasunori;
Iwata, Hiroyoshi

Publication type:

Article

The Evolving Landscape of GEP-NENs in the Era of Precision Oncology: Molecular Insights into Tumor Heterogeneity.

Published in:

Cancers, 2025, v. 17, n. 13, p. 2080, doi. 10.3390/cancers17132080

By:

Mukherjee, Sunanda Biswas;
Shanker, Rachyl M.;
Madigan, James P.;
Sadowski, Samira M.

Publication type:

Article

TFBSFootprinter: a multiomics tool for prediction of transcription factor binding sites in vertebrate species.

Published in:

Transcription (2154-1264), 2025, v. 16, n. 2/3, p. 204, doi. 10.1080/21541264.2025.2521764

By:

Barker, Harlan R.;
Parkkila, Seppo;
Tolvanen, MarttiE.E.

Publication type:

Article

Integrated Multi-Omics Analysis Reveals the Regulatory Mechanism of Peanut Skin Procyanidins on Lipid Metabolism in High-Fat-Diet-Induced Obese Mice.

Published in:

Nutrients, 2025, v. 18, n. 13, p. 2228, doi. 10.3390/nu17132228

By:

Shen, Jinxin;
Zhou, Yi;
Yang, Daijun;
Liu, Ruonan;
Zhu, Xiaoling;
Liu, Rui

Publication type:

Article

Machine Learning and Experimental Validation Reveal MYH11 as a Novel Prognostic Biomarker and Therapeutic Target in Bladder Cancer.

Published in:

Journal of Inflammation Research, 2025, v. 18, p. 8357, doi. 10.2147/JIR.S519719

By:

Tan, Zhiyong;
Chen, Xiaorong;
Fu, Shi;
Huang, Yinglong;
Li, Haihao;
Gong, Chen;
Lv, Dihao;
Yang, Chadanfeng;
Wang, Jiansong;
Ding, Mingxia;
Wang, Haifeng

Publication type:

Article

GPX1 and RCN1 as New Endoplasmic Reticulum Stress-Related Biomarkers in Multiple Sclerosis Brain Tissue and Their Involvement in the APP-CD74 Pathway: An Integrated Study Combining Machine Learning and Multi-Omics.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6286, doi. 10.3390/ijms26136286

By:

Qiao, Zhixin;
Wang, Yanping;
Ma, Xiaoru;
Zhang, Xiyu;
Wu, Junfeng;
Li, Anqi;
Wang, Chao;
Xiu, Xin;
Zhang, Sifan;
Lang, Xiujuan;
Liu, Xijun;
Sun, Bo;
Li, Hulun;
Liu, Yumei

Publication type:

Article

Multi-Omics Integration: Predicting Progression and Optimizing Clinical Treatment of Hepatocellular Carcinoma Through Malignant-Cell-Related Genes.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6135, doi. 10.3390/ijms26136135

By:

Wang, Qianwen;
Cheng, Lingli;
Yan, Honglin;
Yuan, Jingping

Publication type:

Article

Molecular Signatures of Dendritic Cell Activation upon TNF Stimulation: A Multi-Omics Study in Rheumatoid Arthritis.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6071, doi. 10.3390/ijms26136071

By:

Alshevskaya, Alina;
Suleimanov, Shakir;
Sheveleva, Elizaveta;
Perik-Zavodskii, Roman;
Perik-Zavodskaia, Olga;
Alrhmoun, Saleh;
Lopatnikova, Julia;
Zhukova, Julia;
Shkaruba, Nadezhda;
Sivitskaya, Natalia;
Sizikov, Alexey;
Golikova, Elena;
Sennikov, Sergey

Publication type:

Article

Ovarian Cancer: Multi-Omics Data Integration.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 5961, doi. 10.3390/ijms26135961

By:

Kliuchnikova, Anna;
Gordeeva, Arina;
Abdurakhimov, Aziz;
Materova, Tatiana;
Tarbeeva, Svetlana;
Sarygina, Elizaveta;
Kozlova, Anna;
Kiseleva, Olga;
Ponomarenko, Elena;
Ilgisonis, Ekaterina

Publication type:

Article

Integrative analysis of multi-omics data and gut microbiota composition reveals prognostic subtypes and predicts immunotherapy response in colorectal cancer using machine learning.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-08915-1

By:

Wang, Jun;
Cong, Yuan;
Tang, Bo;
Liu, Juan;
Pu, Ke

Publication type:

Article