Works matching DE "MULTIOMICS"

Results: 1686

Role of the "inflammation-immunity-metabolism" network in non-small cell lung cancer: a multi-omics analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02692-z

By:

Zhang, Jingqi;
Lin, Liping;
Li, Wenyuan;
Guo, Jing

Publication type:

Article

Arginine methylation patterns in LUAD: defining prognostic subtypes and relevance to immunotherapy.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02549-5

By:

Shen, Qianyun;
Yang, Yijie;
Guan, Maoying;
Li, Hegen

Publication type:

Article

Harnessing omics data for drug discovery and development in ovarian aging.

Published in:

Human Reproduction Update, 2025, v. 31, n. 3, p. 240, doi. 10.1093/humupd/dmaf002

By:

Zhang, Fengyu;
Zhu, Ming;
Chen, Yi;
Wang, Guiquan;
Yang, Haiyan;
Lu, Xinmei;
Li, Yan;
Chang, Hsun-Ming;
Wu, Yang;
Ma, Yunlong;
Yuan, Shuai;
Zhu, Wencheng;
Dong, Xi;
Zhao, Yue;
Yu, Yang;
Wang, Jia;
Mu, Liangshan

Publication type:

Article

Novel marker genes and small molecule drugs for radiotherapy resistance in cervical cancer identified based on single-cell multi-omics analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02532-0

By:

Liu, Yang;
Pan, Xin;
Zhang, Xu;
Tan, Bo;
Ran, Rui;
Liu, Li;
Yang, Lin;
Wang, Zhiliang

Publication type:

Article

Genetic influence of the brain imaging phenotypes, brain and cerebrospinal fluid metabolites and brain genes on migraine subtypes: a Mendelian randomization and multi-omics study.

Published in:

Journal of Headache & Pain, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s10194-025-02063-7

By:

Zhang, Ping-An;
Wang, Jie-Lin;
Dong, Mei-Hua;
Huang, Xiang-Chun;
Li, Nai-Jian;
Qin, Run-Dong;
Li, Jing

Publication type:

Article

Deciphering the interaction between the expression of LRP2 served as a mitochondrial metabolism-related gene and prognosis in colon cancer integrating multi-omics analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02568-2

By:

Zhang, Jie;
Liu, Ziyun;
Ma, Xiaoqing;
Shi, Zhenyu;
Zhao, Jing;
Xie, Yongjie;
Shang, Xiaobin;
Zhang, Xia

Publication type:

Article

miss-SNF: a multimodal patient similarity network integration approach to handle completely missing data sources Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf150

By:

Gliozzo, Jessica;
Gomez, Mauricio A Soto;
Bonometti, Arturo;
Patak, Alex;
Casiraghi, Elena;
Valentini, Giorgio

Publication type:

Article

MNMO: discover driver genes from a multi-omics data based-multi-layer network Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf134

By:

Deng, Zheng;
Wu, Jingli;
Chen, Xiaorong;
Li, Gaoshi;
Liu, Jiafei;
Hu, Zhipeng;
Li, Rongyuan;
Deng, Wansu

Publication type:

Article

Gencube: centralized retrieval and integration of multi-omics resources from leading databases Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf128

By:

Son, Keun Hong;
Cho, Je-Yoel

Publication type:

Article

Deciphering the role of acetylation-related gene NAT10 in colon cancer progression and immune evasion: implications for overcoming drug resistance.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02617-w

By:

Zhou, Xuancheng;
Sang, Xun;
Jiang, Lai;
Zhang, Shengke;
Jiang, Chenglu;
Gu, Yuheng;
Fu, Yipin;
Yang, Guanhu;
Zhang, Jieyin;
Chi, Hao;
Wang, Binbin;
Zhong, Xiaolin

Publication type:

Article

Advancing precision oncology with AI-powered genomic analysis.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1591696

By:

Srivastava, Ruby

Publication type:

Article

皮肤微生态与微生态护肤品.

Published in:

China Surfactant Detergent & Cosmetics (2097-2806), 2025, v. 55, n. 3, p. 390, doi. 10.3969/j.issn.2097-2806.2025.03.015

By:

赵化冰;
李颖甜;
王熙函;
黄正梅;
路福平

Publication type:

Article

From Multi-omics To Personalized Training: The Rise of Enduromics and Resistomics.

Published in:

Sports Medicine - Open, 2025, v. 11, n. 1, p. 1, doi. 10.1186/s40798-025-00855-4

By:

Khoramipour, Kayvan;
Maroto-Izquierdo, Sergio;
Lista, Simone;
Santos-Lozano, Alejandro;
Suzuki, Katsuhiko

Publication type:

Article

Deciphering Anticancer Mechanisms of Calycosin in Lung Adenocarcinoma Through Multi-Omics: Targeting SMAD3-Mediated NOTCH Signaling in the Tumor Microenvironment.

Published in:

Cancers, 2025, v. 17, n. 9, p. 1455, doi. 10.3390/cancers17091455

By:

Zhang, Bi-Tian;
Song, Xiaoyu;
Cho, Chi-Shing;
Wong, Chun-Kwok;
Wang, Dongjie

Publication type:

Article

Unraveling MASLD: The Role of Gut Microbiota, Dietary Modulation, and AI-Driven Lifestyle Interventions.

Published in:

Nutrients, 2025, v. 17, n. 9, p. 1580, doi. 10.3390/nu17091580

By:

Jiménez-González, Carolina;
Alonso-Peña, Marta;
Argos Vélez, Paula;
Crespo, Javier;
Iruzubieta, Paula

Publication type:

Article

Fermentation of Alginate and Its Oligosaccharides by the Human Gut Microbiota: Structure–Property Relationships and New Findings Focusing on Bacteroides xylanisolvens.

Published in:

Nutrients, 2025, v. 17, n. 9, p. 1424, doi. 10.3390/nu17091424

By:

Li, Jiayi;
Lv, Youjing;
Shao, Meng;
Lv, Depeng;
Fu, Zhiliang;
Guo, Peng;
Li, Quancai;
Shang, Qingsen

Publication type:

Article

Sports Nutrition: Current and Novel Insights.

Published in:

2025

By:

Nieman, David C.

Publication type:

Editorial

The Involvement of Glycerophospholipids in Susceptibility of Maize to Gibberella Root Rot Revealed by Comparative Metabolomics and Mass Spectrometry Imaging Joint Analysis.

Published in:

Plants (2223-7747), 2025, v. 14, n. 9, p. 1376, doi. 10.3390/plants14091376

By:

Wang, Qing;
Zhao, Zi'an;
Li, Xin;
Gao, Xiquan

Publication type:

Article

Single-cell multiomic analysis unveils the immune landscape dynamics of graves' ophthalmopathy.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08115-7

By:

Ke, Shurui;
Liu, Zhong;
Zhou, Ming;
Xiao, Bing;
Hu, Qiuling;
Lin, Jinshan;
Ye, Huijing;
Luo, Lixia;
Lin, Xianchai

Publication type:

Article

Multi-omics identify ribosome related causal genes methylation, splicing, and expression in prostate cancer.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02584-2

By:

Wei, Chengcheng;
He, Jingke;
Li, Yunfan;
Luo, Yu;
Song, Liangdong;
Han, Kun;
Zhang, Jindong;
Su, Shuai;
Wang, Delin

Publication type:

Article

Integration of multi-omics and single-cell transcriptome reveals mitochondrial outer membrane protein-2 (MTX-2) as a prognostic biomarker and characterizes ubiquinone metabolism in lung adenocarcinoma.

Published in:

Journal of Cancer, 2025, v. 16, n. 7, p. 2401, doi. 10.7150/jca.106902

By:

Kumar, Sachin;
Chung-Che Wu;
Wulandari, Fitria Sari;
Chung-Chieh Chiao;
Ching-Chung Ko;
Hung-Yun Lin;
Ngadio, Juan Lorell;
Rebecca, Cathleen;
Do Thi Minh Xuan;
Solomon, Dahlak Daniel;
Michael, Michael;
Kristiani, Lidya;
Jian-Ying Chuang;
Ming-Cheng Tsai;
Chih-Yang Wang

Publication type:

Article

Multi-omic analysis reveals a CAF-stemness-governed classification in HCC liver transplant recipients beyond the Milan criteria.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59745-8

By:

Ling, Sunbin;
Yu, Jiongjie;
Zhan, Qifan;
Gao, Mingwei;
Liu, Peng;
Wu, Yongfeng;
Zhang, Lincheng;
Shan, Qiaonan;
Liu, Huan;
Wang, Jiapei;
Cai, Shuqi;
Zhou, Wei;
Que, Qingyang;
Wang, Shuo;
Hong, Jiachen;
Xiang, Jianan;
Xu, Shengjun;
Liu, Jimin;
Peng, Xiaojun;
Wang, Nan

Publication type:

Article

Exploring WNT pathway dysregulation in serrated colorectal cancer for improved diagnostic and therapeutic strategies.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1586867

By:

Zhu, Fengzhi;
Yan, Helen Hoi Ning;
Tong, Yin;
Zhao, Yueliang

Publication type:

Article

Integrative multi-omics analysis of the microbiome and metabolome in bronchoalveolar lavage fluid from patients with early-stage lung cancer.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1513270

By:

Xie, Jiajun;
Zhu, Nengyang;
Xu, Weiguo

Publication type:

Article

A transcriptomic and proteomic analysis and comparison of human brain tissue from patients with and without epilepsy.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00986-4

By:

Zhu, Taiyang;
Zhou, Yan;
Zhang, Lei;
Kong, Lingwen;
Tang, Hai;
Xiao, Qihua;
Sun, Xiaoyu;
Shen, Fanyu;
Zhou, Hui;
Ni, Wanyan;
Liu, Sha;
Gao, Huimin;
Jin, Guoliang;
Jia, Xiao;
Hua, Fang

Publication type:

Article

Mapping pesticide-induced metabolic alterations in human gut bacteria.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59747-6

By:

Chen, Li;
Yan, Hong;
Di, Shanshan;
Guo, Chao;
Zhang, Huan;
Zhang, Shiqi;
Gold, Andrew;
Wang, Yu;
Hu, Ming;
Wu, Dayong;
Johnson, Caroline H.;
Wang, Xinquan;
Zhu, Jiangjiang

Publication type:

Article

Altered aminoacid and lipid metabolism in a rat orofacial inflammation model determined by omics approach: potential role in trigeminal sensitisation.

Published in:

Journal of Headache & Pain, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s10194-025-02024-0

By:

Takács-Lovász, Krisztina;
Aczél, Timea;
Mohos, Violetta;
Harmath, Máté;
Pirkuliyeva, Jennet;
Karvaly, Gellért;
Farkas, Róbert;
Ciborowski, Michal;
Godzien, Joanna;
Bölcskei, Kata;
Kun, József;
Helyes, Zsuzsanna

Publication type:

Article

New therapeutic targets and mechanisms of papillary thyroid carcinoma identified by multi-omics analysis.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02550-y

By:

Xu, Jianxiong;
Gao, Chen

Publication type:

Article

Effective integration of multi-omics with prior knowledge to identify biomarkers via explainable graph neural networks.

Published in:

NPJ Systems Biology & Applications, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41540-025-00519-9

By:

Tripathy, Rohit K.;
Frohock, Zachary;
Wang, Hong;
Cary, Gregory A.;
Keegan, Stephen;
Carter, Gregory W.;
Li, Yi

Publication type:

Article

Integrated multi-omics analysis and functional validation uncovers RPL26 roles in regulating growth traits of Asian water buffaloes (Bubalus bubalis).

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11618-6

By:

Shen, Yangyang;
An, Zhenjiang;
Gao, Linna;
Gu, Mingfa;
Xia, Shuwen;
Ding, Qiang;
Li, Yinxia;
Cao, Shaoxian;
Li, Jianbin;
Huang, Jinming;
Zhong, Jifeng;
Chen, Kunlin;
Wang, Xiao;
Wang, Huili

Publication type:

Article

PAQR5 drives the malignant progression and shapes the immunosuppressive microenvironment of hepatocellular carcinoma by activating the NF-κB signaling.

Published in:

Biomarker Research, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40364-025-00785-z

By:

Yang, Ruida;
Wang, Huanhuan;
Wu, Cong;
Shi, Yu;
Li, Hanqi;
Bao, Xinyue;
Yang, Yuqian;
Han, Shaoshan;
Yang, Xue;
Tao, Jie;
Sun, Hao;
Wu, Shaobo;
Sun, Liankang

Publication type:

Article

Multi‐omics analyses reveal distinct molecular characteristics and transformation mechanisms of stage I–III micropapillary lung adenocarcinoma.

Published in:

Journal of Pathology, 2025, v. 266, n. 2, p. 204, doi. 10.1002/path.6416

By:

Qu, Yang;
Feng, Xiaoli;
Chen, Hanlin;
Tan, Fengwei;
Shao, Anqi;
Pang, Jiaohui;
Xue, Qi;
Zheng, Bo;
Zheng, Wei;
Ou, Qiuxiang;
Gao, Shugeng;
Shao, Kang

Publication type:

Article

多组学技术在植物代谢通路解析中的联合应用.

Published in:

Biotechnology Bulletin, 2025, v. 41, n. 4, p. 76, doi. 10.13560/j.cnki.biotech.bull.1985.2024-0814

By:

唐游;
赵俊伟;
孙兰茜;
李翔

Publication type:

Article

Genomic Exploration of Nonalcoholic Fatty Liver Disease: Insights From Gene Expression and Variation in Morbidly Obese Individuals.

Published in:

Journal of Obesity, 2025, v. 2025, p. 1, doi. 10.1155/jobe/9245699

By:

Rafaa, Tamadher Abbas;
Khudhair, Safa Abbas;
Mohammed, Zahraa Yassen;
Suleiman, Ahmed AbdulJabbar;
Choubey, Mayank

Publication type:

Article

Multi-omics analysis reveals immunosuppression in oesophageal squamous cell carcinoma induced by creatine accumulation and HK3 deficiency.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01465-1

By:

Gao, Yingzhen;
He, Siyu;
Meng, Xiaoyan;
Zheng, Kun;
Cui, Heyang;
Cheng, Yikun;
Shen, Xinyuan;
Zhai, Yuanfang;
Zou, Binbin;
Wang, Fang;
Li, Hongyi;
Kong, Pengzhou;
Wang, Yanqiang;
Feng, Xuefei;
Yang, Bin;
Sun, Ruifang;
Meng, Yongsheng;
Xu, Enwei;
Guo, Yanlin;
Ding, Ning

Publication type:

Article

Multiomics profiling and parenteral nutrition weaning in pediatric patients with intestinal failure: A longitudinal cohort study.

Published in:

JPEN Journal of Parenteral & Enteral Nutrition, 2025, v. 49, n. 4, p. 451, doi. 10.1002/jpen.2742

By:

Tappauf, Niklas;
Lamers, Yvonne;
Sham, Ho Pan;
Piper, Hannah G.

Publication type:

Article

Comprehensive transcriptomic and metabolomic analysis revealed drought tolerance regulatory pathways in upland cotton.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1571944

By:

Sun, Fenglei;
Wang, Junhao;
Geng, Shiwei;
Liang, Yajun;
Gong, Zhaolong;
Yang, Ni;
Qian, Shuaishuai;
Zhang, Nala;
Li, Xueyuan;
Wang, Junduo;
Zheng, Juyun

Publication type:

Article

Blood-based biomarkers in pancreatic ductal adenocarcinoma: developments over the last decade and what holds for the future- a review.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1555963

By:

Juthani, Ronit;
Manne, Ashish

Publication type:

Article

Early prediction of preeclampsia from clinical, multi-omics and laboratory data using random forest model.

Published in:

BMC Pregnancy & Childbirth, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12884-025-07582-4

By:

Zhao, Qiang;
Li, Jia;
Diao, Zhuo;
Zhang, Xiao;
Feng, Suihua;
Hou, Guixue;
Xu, Wenqiu;
Zhao, Zhiguang;
Qiu, Zhixu;
Yang, Wenzhi;
Zhou, Si;
Tian, Peirun;
Zhang, Qun;
Chen, Weiping;
Li, Huahua;
Xiao, Gefei;
Qin, Jie;
Hu, Liqing;
Li, Zhongzhe;
Lin, Liang

Publication type:

Article

SYMPOSIUM 8 - Current and Future Landscape of Tumor Markers in Clinical Use: Applications, Challenges, and Perspectives.

Published in:: Clinical Chemistry & Laboratory Medicine, 2025, v. 63, n. 1, p. s64, doi. 10.1515/cclm-2025-8026
Publication type:: Article

An outlier approach: advancing diagnosis of neurological diseases through integrating proteomics into multi-omics guided exome reanalysis.

Published in:

NPJ Genomic Medicine, 2025, v. 10, n. 1, p. 1, doi. 10.1038/s41525-025-00493-5

By:

Chui, Martin Man-Chun;
Kwong, Anna Ka-Yee;
Leung, Hiu Yu Cherie;
Pang, Chingyiu;
Scheller, Ines F.;
Wong, Sheila Suet-Na;
Fung, Cheuk-Wing;
Yépez, Vicente A.;
Gagneur, Julien;
Mak, Christopher Chun-Yu;
Chung, Brian Hon-Yin

Publication type:

Article

Nonlinear embedding and integration of omics data: a fast and tuning-free approach.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf184

By:

Liu, Shengjie;
Yu, Tianwei

Publication type:

Article

Mutual-assistance learning for trustworthy biomarker discovery and disease prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf178

By:

Zhang, Jin;
Yang, Yan;
Shang, Muheng;
Guo, Lei;
Zhang, Daoqiang;
Du, Lei;
Initiative, for the Alzheimer's Disease Neuroimaging

Publication type:

Article

Federated transfer learning with differential privacy for multi-omics survival analysis.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf166

By:

Wen, Gang;
Li, Limin

Publication type:

Article

FactVAE: a factorized variational autoencoder for single-cell multi-omics data integration analysis.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf157

By:

Wang, Linjie;
Zhang, Huixia;
Yi, Bo;
Xie, Weidong;
Yu, Kun;
Li, Wei;
Li, Keqin;
Zhao, Dazhe

Publication type:

Article

A comprehensive review of cancer survival prediction using multi-omics integration and clinical variables.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf150

By:

Tran, Dao;
Nguyen, Ha;
Pham, Van-Dung;
Nguyen, Phuong;
Luu, Hung Nguyen;
Phan, Liem Minh;
DeStefano, Christin Blair;
Yeung, Sai-Ching Jim;
Nguyen, Tin

Publication type:

Article

PCLSurv: a prototypical contrastive learning-based multi-omics data integration model for cancer survival prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf124

By:

Li, Zhimin;
Chen, Wenlan;
Zhong, Hai;
Liang, Cheng

Publication type:

Article

Benchmarking ensemble machine learning algorithms for multi-class, multi-omics data integration in clinical outcome prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf116

By:

Spooner, Annette;
Moridani, Mohammad Karimi;
Toplis, Barbra;
Behary, Jason;
Safarchi, Azadeh;
Maher, Salim;
Vafaee, Fatemeh;
Zekry, Amany;
Sowmya, Arcot

Publication type:

Article

MOSim: bulk and single-cell multilayer regulatory network simulator.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf110

By:

Monzó, Carolina;
Aguerralde-Martin, Maider;
Martínez-Mira, Carlos;
Arzalluz-Luque, Ángeles;
Conesa, Ana;
Tarazona, Sonia

Publication type:

Article

Graph neural networks for single-cell omics data: a review of approaches and applications.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf109

By:

Li, Sijie;
Hua, Heyang;
Chen, Shengquan

Publication type:

Article