Works matching DE "MICROORGANISM phylogeny"

Results: 167

Myrothecium verrucaria causing needle blight disease on Blue pine ( Pinus wallichiana): molecular characterization and host range.

Published in:

European Journal of Plant Pathology, 2018, v. 150, n. 2, p. 427, doi. 10.1007/s10658-017-1291-9

By:

Dar, Gh. Hassan;
Beig, M. A.;
Shah, Mehraj-Ul-Din;
Ahanger, F. A.;
Nabi, Asha

Publication type:

Article

Identification of Bacterial Strains Isolated from the Mediterranean Sea Exhibiting Different Abilities of Biofilm Formation.

Published in:

Microbial Ecology, 2014, v. 68, n. 1, p. 94, doi. 10.1007/s00248-013-0342-9

By:

Brian-Jaisson, Florence;
Ortalo-Magné, Annick;
Guentas-Dombrowsky, Linda;
Armougom, Fabrice;
Blache, Yves;
Molmeret, Maëlle

Publication type:

Article

Disentangling Mechanisms Involved in the Adaptation of Photosynthetic Microorganisms to the Extreme Sulphureous Water from Los Baños de Vilo (S Spain).

Published in:

Microbial Ecology, 2013, v. 66, n. 4, p. 742, doi. 10.1007/s00248-013-0268-2

By:

Fernández-Arjona, María;
Bañares-España, Elena;
García-Sánchez, María;
Hernández-López, Miguel;
López-Rodas, Victoria;
Costas, Eduardo;
Flores-Moya, Antonio

Publication type:

Article

SEK: sparsity exploiting k-mer-based estimation of bacterial community composition.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2423, doi. 10.1093/bioinformatics/btu320

By:

Chatterjee, Saikat;
Koslicki, David;
Dong, Siyuan;
Innocenti, Nicolas;
Cheng, Lu;
Lan, Yueheng;
Vehkaperä, Mikko;
Skoglund, Mikael;
Rasmussen, Lars K.;
Aurell, Erik;
Corander, Jukka

Publication type:

Article

Population structures of the water-borne plant pathogen Phytopythium helicoides reveal its possible origins and transmission modes in Japan.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209667

By:

Afandi, Auliana;
Murayama, Emi;
Yin-Ling, null;
Hieno, Ayaka;
Suga, Haruhisa;
Kageyama, Koji

Publication type:

Article

Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0191362

By:

Noll, Lance W.;
Worley, Jay N.;
Yang, Xun;
Shridhar, Pragathi B.;
Ludwig, Justin B.;
Shi, Xiaorong;
Bai, Jianfa;
Caragea, Doina;
Meng, Jianghong;
Nagaraja, T. G.

Publication type:

Article

Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0190986

By:

Zhan, Xiao-Yong;
Zhu, Qing-Yi

Publication type:

Article

Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0191891

By:

Aibekova, Lazzat;
Foley, Brian;
Hortelano, Gonzalo;
Raees, Muhammad;
Abdraimov, Sabit;
Toichuev, Rakhmanbek;
Ali, Syed

Publication type:

Article

Molecular markers in studies on fish parasites (Platyhelminthes): Review.

Published in:

Acta Scientiarum: Biological Sciences, 2016, v. 38, n. 4, p. 495, doi. 10.4025/actascibiolsci.v38i4.29499

By:

da Graça, Rodrigo Junio;
Carrenho Fabrin, Thomaz Mansini;
Gasques, Luciano Seraphim;
Alves Pinto Prioli, Sônia Maria;
Prioli, Alberto José;
Takemoto, Ricardo Massato

Publication type:

Article

Seasonal and spatial variations in microbial activity at various phylogenetic resolutions at a groundwater - surface water interface.

Published in:

Canadian Journal of Microbiology, 2014, v. 60, n. 5, p. 277, doi. 10.1139/cjm-2014-0048

By:

Yu, Ran;
Smets, Barth F.;
Gan, Ping;
MacKay, Allison A.;
Graf, Joerg

Publication type:

Article

Development of a phylogenetic microarray for comprehensive analysis of ruminal bacterial communities.

Published in:

Journal of Applied Microbiology, 2014, v. 117, n. 4, p. 949, doi. 10.1111/jam.12598

By:

Kim, M.;
Wang, L.;
Morrison, M.;
Yu, Z.

Publication type:

Article

Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-895

By:

Olson, Adam B.;
Kent, Heather;
Sibley, Christopher D.;
Grinwis, Margot E.;
Mabon, Philip;
Ouellette, Claude;
Tyson, Shari;
Graham, Morag;
Tyler, Shaun D.;
Van Domselaar, Gary;
Surette, Michael G.;
Corbett, Cindi R.

Publication type:

Article

Phylogenetic Identification of DNase Secreting Soil Bacteria Antagonistic to Fungus Aspergillus.

Published in:

Nature Environment & Pollution Technology, 2016, v. 15, n. 1, p. 19

By:

Khan, Minhaj Ahmad;
K., Arun Kumar;
Bhople, Balkrishna Sopan;
Srivastava, Pradeep K.

Publication type:

Article

Taxonomic bias in AMP prediction of invertebrate peptides.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-97415-z

By:

Rádai, Zoltán;
Kiss, Johanna;
Nagy, Nikoletta A.

Publication type:

Article

Predicting hosts based on early SARS-CoV-2 samples and analyzing the 2020 pandemic.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-96903-6

By:

Guo, Qian;
Li, Mo;
Wang, Chunhui;
Guo, Jinyuan;
Jiang, Xiaoqing;
Tan, Jie;
Wu, Shufang;
Wang, Peihong;
Xiao, Tingting;
Zhou, Man;
Fang, Zhencheng;
Xiao, Yonghong;
Zhu, Huaiqiu

Publication type:

Article

Unraveling the ecological processes modulating the population structure of Escherichia coli in a highly polluted urban stream network.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94198-1

By:

Saraceno, Martín;
Gómez Lugo, Sebastián;
Ortiz, Nicolás;
Gómez, Bárbara M.;
Sabio y García, Carmen A.;
Frankel, Nicolás;
Graziano, Martín

Publication type:

Article

Invasion of insect cells by S piroplasma citri involves spiralin relocalization and lectin/glycoconjugate-type interactions.

Published in:

Cellular Microbiology, 2014, v. 16, n. 7, p. 1119, doi. 10.1111/cmi.12265

By:

Duret, Sybille;
Batailler, Brigitte;
Dubrana, Marie‐Pierre;
Saillard, Colette;
Renaudin, Joël;
Béven, Laure;
Arricau‐Bouvery, Nathalie

Publication type:

Article

Phylogenetic Analysis of Torque Teno Virus in Thalassemic Children in Egypt.

Published in:

Intervirology, 2017, v. 60, n. 3, p. 102, doi. 10.1159/000480507

By:

Hassuna, Noha a.;
Naguib, Eman;
abdel-Fatah, Medhat;
Mousa, Suzan M. Omar

Publication type:

Article

Detection and Phylogenetic Analysis of Torque Teno Virus in Salivary and Tumor Biopsy Samples from Head and Neck Carcinoma Patients.

Published in:

Intervirology, 2016, v. 59, n. 2, p. 123, doi. 10.1159/000452974

By:

Hettmann, andrea;
Demcsák, anett;
Bach, Ádám;
Decsi, Gábor;
Dencs, Ágnes;
Pálinkó, Dóra;
Rovó, László;
Nagy, Katalin;
Minarovits, Janos;
Takács, Mária

Publication type:

Article

A revision of Salispina, its placement in a new family, Salispinaceae (Rhipidiales), and description of a fourth species, S. hoi sp. nov.

Published in:

IMA Fungus, 2018, v. 9, n. 2, p. 259, doi. 10.5598/imafungus.2018.09.02.03

By:

Bennett, Reuel M.;
Devanadera, Mark Kevin;
Dedeles, Gina R.;
Thines, Marco

Publication type:

Article

Phylogenetic analysis of the core histone doublet and DNA topo II genes of Marseilleviridae: evidence of proto-eukaryotic provenance.

Published in:

Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0162-0

By:

Erives, Albert J.

Publication type:

Article

Partitioning the Relative Importance of Phylogeny and Environmental Conditions on Phytoplankton Fatty Acids.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130053

By:

Galloway, Aaron W. E.;
Winder, Monika

Publication type:

Article

A Taxonomic Revision of the Wallemia sebi Species Complex.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0125933

By:

Jančič, Sašo;
Nguyen, Hai D. T.;
Frisvad, Jens C.;
Zalar, Polona;
Schroers, Hans-Josef;
Seifert, Keith A.;
Gunde-Cimerman, Nina

Publication type:

Article

The Effect of Phylogenetically Different Bacteria on the Fitness of Pseudomonas fluorescens in Sand Microcosms.

Published in:

PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119838

By:

Tyc, Olaf;
Wolf, Alexandra B.;
Garbeva, Paolina

Publication type:

Article

Analysis of the Relationship between Genomic GC Content and Patterns of Base Usage, Codon Usage and Amino Acid Usage in Prokaryotes: Similar GC Content Adopts Similar Compositional Frequencies Regardless of the Phylogenetic Lineages.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107319

By:

Zhou, Hui-Qi;
Ning, Lu-Wen;
Zhang, Hui-Xiong;
Guo, Feng-Biao

Publication type:

Article

Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104427

By:

Vigneron, Adrien;
Cruaud, Perrine;
Roussel, Erwan G.;
Pignet, Patricia;
Caprais, Jean-Claude;
Callac, Nolwenn;
Ciobanu, Maria-Cristina;
Godfroy, Anne;
Cragg, Barry A.;
Parkes, John R.;
Van Nostrand, Joy D.;
He, Zhili;
Zhou, Jizhong;
Toffin, Laurent

Publication type:

Article

New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099168

By:

Nascimento, Francisco X.;
Rossi, Márcio J.;
Soares, Cláudio R. F. S.;
McConkey, Brendan J.;
Glick, Bernard R.

Publication type:

Article

Phylogenetic Patterns in the Microbial Response to Resource Availability: Amino Acid Incorporation in San Francisco Bay.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095842

By:

Mayali, Xavier;
Weber, Peter K.;
Mabery, Shalini;
Pett-Ridge, Jennifer

Publication type:

Article

New Coxsackievirus B4 Genotype Circulating in Inner Mongolia Autonomous Region, China.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090379

By:

Tian, Xiaoling;
Zhang, Yong;
Gu, Suyi;
Fan, Yaochun;
Sun, Qiang;
Zhang, Bo;
Yan, Shaohong;
Xu, Wenbo;
Ma, Xueen;
Wang, Wenrui

Publication type:

Article

What Does the Talking?: Quorum Sensing Signalling Genes Discovered in a Bacteriophage Genome.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085131

By:

Hargreaves, Katherine R.;
Kropinski, Andrew M.;
Clokie, Martha R. J.

Publication type:

Article

New Insights into the Phylogeny and Molecular Classification of Nicotinamide Mononucleotide Deamidases.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082705

By:

Sánchez-Carrón, Guiomar;
Martínez-Moñino, Ana Belén;
Sola-Carvajal, Agustín;
Takami, Hideto;
García-Carmona, Francisco;
Sánchez-Ferrer, Álvaro

Publication type:

Article

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081760

By:

Gardner, Shea N.;
Hall, Barry G.

Publication type:

Article

Rapid Differentiation between Livestock-Associated and Livestock-Independent Staphylococcus aureus CC398 Clades.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079645

By:

Stegger, Marc;
Liu, Cindy M.;
Larsen, Jesper;
Soldanova, Katerina;
Aziz, Maliha;
Contente-Cuomo, Tania;
Petersen, Andreas;
Vandendriessche, Stien;
Jiménez, Judy N.;
Mammina, Caterina;
van Belkum, Alex;
Salmenlinna, Saara;
Laurent, Frederic;
Skov, Robert L.;
Larsen, Anders R.;
Andersen, Paal S.;
Price, Lance B.

Publication type:

Article

Analysis of Mammalian rDNA Internal Transcribed Spacers.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079122

By:

Coleman, Annette W.

Publication type:

Article

A Study on the Geophylogeny of Clinical and Environmental Vibrio cholerae in Kenya.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074829

By:

Kiiru, John;
Mutreja, Ankur;
Mohamed, Ahmed Abade;
Kimani, Racheal W.;
Mwituria, Joyce;
Sanaya, Robert Onsare;
Muyodi, Jane;
Revathi, Gunturu;
Parkhill, Julian;
Thomson, Nicholas;
Dougan, Gordon;
Kariuki, Samuel

Publication type:

Article

Comparative Genomics Reveal That Host-Innate Immune Responses Influence the Clinical Prevalence of Legionella pneumophila Serogroups.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0067298

By:

Khan, Mohammad Adil;
Knox, Natalie;
Prashar, Akriti;
Alexander, David;
Abdel-Nour, Mena;
Duncan, Carla;
Tang, Patrick;
Amatullah, Hajera;
Dos Santos, Claudia C.;
Tijet, Nathalie;
Low, Donald E.;
Pourcel, Christine;
Van Domselaar, Gary;
Terebiznik, Mauricio;
Ensminger, Alexander W.;
Guyard, Cyril

Publication type:

Article

Characterization of the Non-Polio Enterovirus Infections Associated with Acute Flaccid Paralysis in South-Western India.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061650

By:

Laxmivandana, Rongala;
Yergolkar, Prasanna;
Gopalkrishna, Varanasi;
Chitambar, Shobha D.

Publication type:

Article

Identification and genetic characterization of <italic>Sarcocystis arctica</italic> and <italic>Sarcocystis lutrae</italic> in red foxes (<italic>Vulpes vulpes</italic>) from Baltic States and Spain.

Published in:

Parasites & Vectors, 2018, v. 11, p. 1, doi. 10.1186/s13071-018-2694-y

By:

Kirillova, Viktorija;
Prakas, Petras;
Calero-Bernal, Rafael;
Gavarāne, Inese;
Fernández-García, José Luis;
Martínez-González, Manuel;
Rudaitytė-Lukošienė, Eglė;
Martínez-Estéllez, Miguel Ángel Habela;
Butkauskas, Dalius;
Kirjušina, Muza

Publication type:

Article

Inferring Bounded Evolution in Phenotypic Characters from Phylogenetic Comparative Data.

Published in:

Systematic Biology, 2016, v. 65, n. 4, p. 651, doi. 10.1093/sysbio/syw015

By:

BOUCHER, FLORIAN C.;
DÉMERY, VINCENT

Publication type:

Article

Concatabominations: Identifying Unstable Taxa in Morphological Phylogenetics using a Heuristic Extension to Safe Taxonomic Reduction.

Published in:

Systematic Biology, 2015, v. 64, n. 1, p. 137, doi. 10.1093/sysbio/syu066

By:

Siu-Ting, Karen;
Pisani, Davide;
Creevey, Christopher J.;
Wilkinson, Mark

Publication type:

Article

Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0973-4

By:

Anderson, Frank E.;
Williams, Bronwyn W.;
Horn, Kevin M.;
Erséus, Christer;
Halanych, Kenneth M.;
Santos, Scott R.;
James, Samuel W.

Publication type:

Article

Morphology, seasonality and phylogenetic relationships of Ceratomyxa husseini n. sp. from the gall-bladder of Cephalopholis hemistiktos (Rüppell) (Perciformes: Serranidae) in the Arabian Gulf off Saudi Arabia.

Published in:

Systematic Parasitology, 2015, v. 91, n. 1, p. 91, doi. 10.1007/s11230-015-9554-3

By:

Abdel-Baki, Abdel-Azeem;
Mansour, Lamjed;
Al-Qahtani, Hussain;
Al Omar, Suliman;
Al-Quraishy, Saleh

Publication type:

Article

Antimicrobial activity and Identification of fungus associated Stylissa flabelliformis sponge collected from Menjangan Island West Bali National Park, Indonesia.

Published in:

Indonesian Journal of Pharmacy / Majalah Farmasi Indonesia, 2018, v. 29, n. 2, p. 66, doi. 10.14499/indonesianjpharm29iss2pp66

By:

Setyowati, Erna Prawita;
Pratiwi, Sylvia Utami Tunjung;
Purwantiningsih;
Samirana, Putu Oka

Publication type:

Article

Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0101-2

By:

Promponas, Vasilis;
Iliopoulos, Ioannis;
Ouzounis, Christos

Publication type:

Article

Complete genome sequence of Novosphingobium pentaromativorans US6-1.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0102-1

By:

Choi, Dong;
Kwon, Yong;
Kwon, Kae;
Kim, Sang-Jin

Publication type:

Article

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7

By:

Yassin, Atteyet F.;
Lapidus, Alla;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation.

Published in:

Molecular Microbiology, 2014, v. 92, n. 2, p. 369, doi. 10.1111/mmi.12564

By:

Wurtmann, Elisabeth J.;
Ratushny, Alexander V.;
Pan, Min;
Beer, Karlyn D.;
Aitchison, John D.;
Baliga, Nitin S.

Publication type:

Article

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

Published in:

Molecular Ecology, 2017, v. 26, n. 17, p. 4497, doi. 10.1111/mec.14176

By:

Pascoe, Ben;
Méric, Guillaume;
Yahara, Koji;
Wimalarathna, Helen;
Murray, Susan;
Hitchings, Matthew D.;
Sproston, Emma L.;
Carrillo, Catherine D.;
Taboada, Eduardo N.;
Cooper, Kerry K.;
Huynh, Steven;
Cody, Alison J.;
Jolley, Keith A.;
Maiden, Martin C. J.;
McCarthy, Noel D.;
Didelot, Xavier;
Parker, Craig T.;
Sheppard, Samuel K.

Publication type:

Article

New insights into relationships between active and dormant organisms, phylogenetic diversity and ecosystem productivity.

Published in:

Molecular Ecology, 2015, v. 24, n. 23, p. 5767, doi. 10.1111/mec.13449

By:

Cram, Jacob A.

Publication type:

Article

Morphological and molecular characterisation of new and known species of Tripyla Bastian, 1865 (Triplonchida: Tripylidae) from northern Iran, with phylogenetic relationships, compendium and identification key.

Published in:

Nematology, 2017, v. 19, n. 1, p. 21, doi. 10.1163/15685411-00003030

By:

ASGHARI, Ramezan;
ESKANDARI, Ali;
MAAFI, Zahra TANHA;
ÁLVAREZ-ORTEGA, Sergio;
ZHAO, Zeng Qi

Publication type:

Article