Works matching DE "MICROORGANISM phylogeny"

Results: 166

Desertiactinospora gelatinilytica gen. nov., sp. nov., a new member of the family Streptosporangiaceae isolated from the Karakum Desert.

Published in:

Antonie van Leeuwenhoek, 2019, v. 112, n. 3, p. 409, doi. 10.1007/s10482-018-1169-7

By:

Saygin, Hayrettin;
Ay, Hilal;
Guven, Kiymet;
Cetin, Demet;
Sahin, Nevzat

Publication type:

Article

Streptomyces polaris sp. nov. and Streptomyces septentrionalis sp. nov., isolated from frozen soil.

Published in:

Antonie van Leeuwenhoek, 2019, v. 112, n. 3, p. 375, doi. 10.1007/s10482-018-1166-x

By:

Kamjam, Manita;
Nopnakorn, Potjanicha;
Zhang, Li;
Peng, Fang;
Deng, Zixin;
Hong, Kui

Publication type:

Article

Actinomycetospora callitridis sp. nov., an endophytic actinobacterium isolated from the surface-sterilised root of an Australian native pine tree.

Published in:

Antonie van Leeuwenhoek, 2019, v. 112, n. 3, p. 331, doi. 10.1007/s10482-018-1162-1

By:

Kaewkla, Onuma;
Franco, Christopher Milton Mathew

Publication type:

Article

Wenzhouxiangella marina gen. nov, sp. nov, a marine bacterium from the culture broth of Picochlorum sp. 122, and proposal of Wenzhouxiangellaceae fam. nov. in the order Chromatiales.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 6, p. 1625, doi. 10.1007/s10482-015-0458-7

By:

Wang, Guanghua;
Tang, Mingxing;
Li, Tao;
Dai, Shikun;
Wu, Huanlian;
Chen, Chenghao;
He, Hui;
Fan, Jiewei;
Xiang, Wenzhou;
Li, Xiang

Publication type:

Article

Relationship between honeybee nutrition and their microbial communities.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 4, p. 921, doi. 10.1007/s10482-015-0384-8

By:

Saraiva, Miriane;
Zemolin, Ana;
Franco, Jeferson;
Boldo, Juliano;
Stefenon, Valdir;
Triplett, Eric;
Oliveira Camargo, Flávio;
Roesch, Luiz

Publication type:

Article

Isolation and classification of a novel marine Bacteroidetes as Frondibacter aureus gen. nov., sp. nov.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 2, p. 321, doi. 10.1007/s10482-014-0330-1

By:

Yoon, Jaewoo;
Adachi, Kyoko;
Kasai, Hiroaki

Publication type:

Article

A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 2, p. 467, doi. 10.1007/s10482-014-0344-8

By:

Naushad, Sohail;
Adeolu, Mobolaji;
Wong, Shirley;
Sohail, Misbah;
Schellhorn, Herbert;
Gupta, Radhey

Publication type:

Article

A revision of Salispina, its placement in a new family, Salispinaceae (Rhipidiales), and description of a fourth species, S. hoi sp. nov.

Published in:

IMA Fungus, 2018, v. 9, n. 2, p. 259, doi. 10.5598/imafungus.2018.09.02.03

By:

Bennett, Reuel M.;
Devanadera, Mark Kevin;
Dedeles, Gina R.;
Thines, Marco

Publication type:

Article

Molecular Evidence for the Wide Distribution of Two Lineages of Terrestrial Green Algae (Chlorophyta) over Tropics to Temperate Zone.

Published in:

ISRN Ecology, 2012, p. 1, doi. 10.5402/2012/795924

By:

Hodač, Ladislav;
Hallmann, Christine;
Rosenkranz, Helen;
Faßhauer, Fabian;
FriedI, Thomas

Publication type:

Article

Seven new species of Oculatella (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification.

Published in:

European Journal of Phycology, 2014, v. 49, n. 4, p. 450, doi. 10.1080/09670262.2014.976843

By:

Osorio-Santos, Karina;
Pietrasiak, Nicole;
Bohunická, Markéta;
Miscoe, Laura H.;
Kováčik, Lubomir;
Martin, Michael P.;
Johansen, Jeffrey R.

Publication type:

Article

Phylogenetic Diversity of Microorganisms from Chemocline of the Meromictic Soda Lake Doroninskoe (Zabaikalie, Russia).

Published in:

Acta Geologica Sinica (English Edition), 2014, v. 88, p. 153, doi. 10.1111/1755-6724.12267_10

By:

MATYUGINA, Evgeniya;
BELKOVA, Natalia

Publication type:

Article

Development of a phylogenetic microarray for comprehensive analysis of ruminal bacterial communities.

Published in:

Journal of Applied Microbiology, 2014, v. 117, n. 4, p. 949, doi. 10.1111/jam.12598

By:

Kim, M.;
Wang, L.;
Morrison, M.;
Yu, Z.

Publication type:

Article

Molecular typing and occurrence of beta-lactam resistance genes of Shigella sonnei strains isolated from 1983 to 2014 in the São Paulo state of Brazil.

Published in:

Microbiology & Immunology, 2017, v. 61, n. 12, p. 547, doi. 10.1111/1348-0421.12550

By:

Seribelli, Amanda Ap.;
Frazão, Miliane R.;
Medeiros, Marta I. Cazentini;
Stehling, Eliana G.;
Falcão, Juliana P.

Publication type:

Article

Functional Basis of Microorganism Classification.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004472

By:

Zhu, Chengsheng;
Delmont, Tom O.;
Vogel, Timothy M.;
Bromberg, Yana

Publication type:

Article

Exploring Bacterial Organelle Interactomes: A Model of the Protein-Protein Interaction Network in the Pdu Microcompartment.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004067

By:

Jorda, Julien;
Liu, Yu;
Bobik, Thomas A.;
Yeates, Todd O.

Publication type:

Article

Morphology, seasonality and phylogenetic relationships of Ceratomyxa husseini n. sp. from the gall-bladder of Cephalopholis hemistiktos (Rüppell) (Perciformes: Serranidae) in the Arabian Gulf off Saudi Arabia.

Published in:

Systematic Parasitology, 2015, v. 91, n. 1, p. 91, doi. 10.1007/s11230-015-9554-3

By:

Abdel-Baki, Abdel-Azeem;
Mansour, Lamjed;
Al-Qahtani, Hussain;
Al Omar, Suliman;
Al-Quraishy, Saleh

Publication type:

Article

Comparative Phylogeny of the Genus Bordetella Using Sequence Analysis of 16S rRNA and ompA Genes.

Published in:

Journal of Medical Bacteriology, 2017, v. 6, n. 3/4, p. 1

By:

Badamchi, Ali;
Papizadeh, Moslem

Publication type:

Article

Characterization of the FMDV-serotype-O isolates collected during 1962 and 1997 discloses new topotypes, CEY-1 and WCSA-1, and six new lineages.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-51120-0

By:

Ranaweera, Lahiru Thilanka;
Wijesundara, Upendra Kumari;
Jayarathne, Hashan Sri-Madhubashana;
Knowles, Nick;
Wadsworth, Jemma;
Mioulet, Valerie;
Adikari, Jayantha;
Weebadde, Cholani;
Sooriyapathirana, Suneth S.

Publication type:

Article

Canine parvovirus (CPV) phylogeny is associated with disease severity.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47773-6

By:

Franzo, Giovanni;
Tucciarone, Claudia Maria;
Casagrande, Sira;
Caldin, Marco;
Cortey, Martí;
Furlanello, Tommaso;
Legnardi, Matteo;
Cecchinato, Mattia;
Drigo, Michele

Publication type:

Article

Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0293-8

By:

Pratama, Akbar Adjie;
Ul Haq, Irshad;
Nazir, Rashid;
De Mares, Maryam Chaib;
van Elsas, Jan Dirk

Publication type:

Article

Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0101-2

By:

Promponas, Vasilis;
Iliopoulos, Ioannis;
Ouzounis, Christos

Publication type:

Article

Complete genome sequence of Novosphingobium pentaromativorans US6-1.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0102-1

By:

Choi, Dong;
Kwon, Yong;
Kwon, Kae;
Kim, Sang-Jin

Publication type:

Article

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395<sup>T</sup> (DSM 45146<sup>T</sup>).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7

By:

Yassin, Atteyet F.;
Lapidus, Alla;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation.

Published in:

Molecular Microbiology, 2014, v. 92, n. 2, p. 369, doi. 10.1111/mmi.12564

By:

Wurtmann, Elisabeth J.;
Ratushny, Alexander V.;
Pan, Min;
Beer, Karlyn D.;
Aitchison, John D.;
Baliga, Nitin S.

Publication type:

Article

Buwchfawromyces eastonii gen. nov., sp. nov.: a new anaerobic fungus (Neocallimastigomycota) isolated from buffalo faeces.

Published in:

MycoKeys, 2015, n. 9, p. 11, doi. 10.3897/mycokeys.9.9032

By:

Callaghan, Tony Martin;
Podmirseg, Sabine Marie;
Hohlweck, Daniel;
Edwards, Joan Elizabeth;
Puniya, Anil Kumar;
Dagar, Sumit Singh;
Griffith, Gareth Wyn

Publication type:

Article

Molecular and Morphometric Characterization of Acanthamoeba spp. from DifferentWater Sources of Northwest Iran as a Neglected Focus, Co-Bordered With the Country of Iraq.

Published in:

Jundishapur Journal of Microbiology, 2016, v. 9, n. 11, p. 1, doi. 10.5812/jjm.38481

By:

Khezri, Aram;
Fallah, Esmaeel;
Mostafazadeh, Mostafa;
Spotin, Adel;
Shahbazi, Abbas;
Mahami-Oskouei, Mahmoud;
Hazratian, Taimuor

Publication type:

Article

The loose evolutionary relationships between transcription factors and other gene products across prokaryotes.

Published in:

BMC Research Notes, 2014, v. 7, n. 1, p. 866, doi. 10.1186/1756-0500-7-928

By:

del Grande, Marc;
Moreno-Hagelsieb, Gabriel

Publication type:

Article

Identification and genetic characterization of <italic>Sarcocystis arctica</italic> and <italic>Sarcocystis lutrae</italic> in red foxes (<italic>Vulpes vulpes</italic>) from Baltic States and Spain.

Published in:

Parasites & Vectors, 2018, v. 11, p. 1, doi. 10.1186/s13071-018-2694-y

By:

Kirillova, Viktorija;
Prakas, Petras;
Calero-Bernal, Rafael;
Gavarāne, Inese;
Fernández-García, José Luis;
Martínez-González, Manuel;
Rudaitytė-Lukošienė, Eglė;
Martínez-Estéllez, Miguel Ángel Habela;
Butkauskas, Dalius;
Kirjušina, Muza

Publication type:

Article

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 9, p. 1879, doi. 10.1038/ismej.2014.28

By:

Li, Yan;
He, Jinzhi;
He, Zhili;
Zhou, Yuan;
Yuan, Mengting;
Xu, Xin;
Sun, Feifei;
Liu, Chengcheng;
Li, Jiyao;
Xie, Wenbo;
Deng, Ye;
Qin, Yujia;
VanNostrand, Joy D;
Xiao, Liying;
Wu, Liyou;
Zhou, Jizhong;
Shi, Wenyuan;
Zhou, Xuedong

Publication type:

Article

Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 8, p. 1621, doi. 10.1038/ismej.2014.13

By:

Fuentes, Susana;
van Nood, Els;
Tims, Sebastian;
Heikamp-de Jong, Ineke;
ter Braak, Cajo JF;
Keller, Josbert J;
Zoetendal, Erwin G;
de Vos, Willem M

Publication type:

Article

Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 8, p. 1659, doi. 10.1038/ismej.2014.23

By:

Duran-Pinedo, Ana E;
Chen, Tsute;
Teles, Ricardo;
Starr, Jacqueline R;
Wang, Xiaoshan;
Krishnan, Keerthana;
Frias-Lopez, Jorge

Publication type:

Article

Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 1, p. 115, doi. 10.1038/ismej.2013.142

By:

Lagkouvardos, Ilias;
Weinmaier, Thomas;
Lauro, Federico M;
Cavicchioli, Ricardo;
Rattei, Thomas;
Horn, Matthias

Publication type:

Article

Waiting for the human intestinal Eukaryotome.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1253, doi. 10.1038/ismej.2013.21

By:

Andersen, Lee O'Brien;
Vedel Nielsen, Henrik;
Stensvold, Christen Rune

Publication type:

Article

Molecular evidence for an active endogenous microbiome beneath glacial ice.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1402, doi. 10.1038/ismej.2013.31

By:

Hamilton, Trinity L;
Peters, John W;
Skidmore, Mark L;
Boyd, Eric S

Publication type:

Article

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1322, doi. 10.1038/ismej.2013.32

By:

Vergin, Kevin L;
Beszteri, Bánk;
Monier, Adam;
Cameron Thrash, J;
Temperton, Ben;
Treusch, Alexander H;
Kilpert, Fabian;
Worden, Alexandra Z;
Giovannoni, Stephen J

Publication type:

Article

Phylogenetic conservatism of functional traits in microorganisms.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 830, doi. 10.1038/ismej.2012.160

By:

Martiny, Adam C;
Treseder, Kathleen;
Pusch, Gordon

Publication type:

Article

Microbiota conservation and BMI signatures in adult monozygotic twins.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 707, doi. 10.1038/ismej.2012.146

By:

Tims, Sebastian;
Derom, Catherine;
Jonkers, Daisy M;
Vlietinck, Robert;
Saris, Wim H;
Kleerebezem, Michiel;
de Vos, Willem M;
Zoetendal, Erwin G

Publication type:

Article

Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 817, doi. 10.1038/ismej.2012.150

By:

Burow, Luke C;
Woebken, Dagmar;
Marshall, Ian PG;
Lindquist, Erika A;
Bebout, Brad M;
Prufert-Bebout, Leslie;
Hoehler, Tori M;
Tringe, Susannah G;
Pett-Ridge, Jennifer;
Weber, Peter K;
Spormann, Alfred M;
Singer, Steven W

Publication type:

Article

Looking for morphological evidence of cryptic species in Asterina Nardo, 1834 (Echinodermata: Asteroidea). The redescription of Asterina pancerii (Gasco, 1870) and the description of two new species.

Published in:

Invertebrate Systematics, 2018, v. 32, n. 3, p. 505, doi. 10.1071/IS17024

By:

López-Márquez, Violeta;
Acevedo, Iván;
Manjón-Cabeza, M. Eugenia;
García-Jiménez, Ricardo;
Templado, José;
Machordom, Annie

Publication type:

Article

SEK: sparsity exploiting k-mer-based estimation of bacterial community composition.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2423, doi. 10.1093/bioinformatics/btu320

By:

Chatterjee, Saikat;
Koslicki, David;
Dong, Siyuan;
Innocenti, Nicolas;
Cheng, Lu;
Lan, Yueheng;
Vehkaperä, Mikko;
Skoglund, Mikael;
Rasmussen, Lars K.;
Aurell, Erik;
Corander, Jukka

Publication type:

Article

Shifts in a bacterial community composition of a mesotrophic peatland after wildfire.

Published in:

Microbiology (00262617), 2014, v. 83, n. 6, p. 813, doi. 10.1134/S0026261714060022

By:

Belova, S.;
Kulichevskaya, I.;
Akhmet'eva, N.;
Dedysh, S.

Publication type:

Article

Phylogenetic position of the purple sulfur bacterium Lamprobacter modestohalophilus determined based on the data on new strains of the species.

Published in:

Microbiology (00262617), 2014, v. 83, n. 6, p. 829, doi. 10.1134/S0026261714060071

By:

Gorlenko, V.;
Bryantseva, I.;
Lunina, O.;
Tourova, T.

Publication type:

Article

Candidatus 'Chloroploca asiatica' gen. nov., sp. nov., a new mesophilic filamentous anoxygenic phototrophic bacterium.

Published in:

Microbiology (00262617), 2014, v. 83, n. 6, p. 838, doi. 10.1134/S0026261714060083

By:

Gorlenko, V.;
Bryantseva, I.;
Kalashnikov, A.;
Gaisin, V.;
Sukhacheva, M.;
Gruzdev, D.;
Kuznetsov, B.

Publication type:

Article

Phylogenetic diversity of bacteria in soda lake stratified sediments.

Published in:

Microbiology (00262617), 2014, v. 83, n. 6, p. 869, doi. 10.1134/S0026261714060186

By:

Tourova, T.;
Grechnikova, M.;
Kuznetsov, B.;
Sorokin, D.

Publication type:

Article

Development of Genomic Tools for the Identification of Certain Pseudomonas up to Species Level.

Published in:

Indian Journal of Microbiology, 2013, v. 53, n. 3, p. 253, doi. 10.1007/s12088-013-0412-1

By:

Bhushan, Ashish;
Joshi, Jayadev;
Shankar, Pratap;
Kushwah, Jyoti;
Raju, Sajan;
Purohit, Hemant;
Kalia, Vipin

Publication type:

Article

Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0973-4

By:

Anderson, Frank E.;
Williams, Bronwyn W.;
Horn, Kevin M.;
Erséus, Christer;
Halanych, Kenneth M.;
Santos, Scott R.;
James, Samuel W.

Publication type:

Article

Long-term straw returning affects Nitrospira-like nitrite oxidizing bacterial community in a rapeseed-rice rotation soil.

Published in:

Journal of Basic Microbiology, 2017, v. 57, n. 4, p. 309, doi. 10.1002/jobm.201600400

By:

Luo, Xuesong;
Han, Shun;
Lai, Songsong;
Huang, Qiaoyun;
Chen, Wenli

Publication type:

Article

Phylogenetic analysis of the Listeria monocytogenes based on sequencing of 16S rRNA and hlyA genes.

Published in:

Molecular Biology Reports, 2014, v. 41, n. 12, p. 8219, doi. 10.1007/s11033-014-3724-2

By:

Soni, Dharmendra;
Dubey, Suresh

Publication type:

Article

Myrothecium verrucaria causing needle blight disease on Blue pine ( Pinus wallichiana): molecular characterization and host range.

Published in:

European Journal of Plant Pathology, 2018, v. 150, n. 2, p. 427, doi. 10.1007/s10658-017-1291-9

By:

Dar, Gh. Hassan;
Beig, M. A.;
Shah, Mehraj-Ul-Din;
Ahanger, F. A.;
Nabi, Asha

Publication type:

Article

Molecular analysis of Rhipicephalus sanguineus (Acari: Ixodidae), an incriminated vector tick for Babesia vogeli in Taiwan.

Published in:

Experimental & Applied Acarology, 2016, v. 70, n. 4, p. 469, doi. 10.1007/s10493-016-0094-6

By:

Chao, Li-Lian;
Shih, Chien-Ming

Publication type:

Article