Works about MICROBIAL genomes

Results: 1048

BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-024-11158-5

By:

Strepis, Nikolaos;
Dollee, Dennis;
Vrins, Donny;
Vanneste, Kevin;
Bogaerts, Bert;
Carrillo, Catherine;
Bharat, Amrita;
Horan, Kristy;
Sherry, Norelle L.;
Seemann, Torsten;
Howden, Benjamin P.;
Hiltemann, Saskia;
Chindelevitch, Leonid;
Stubbs, Andrew P.;
Hays, John P.

Publication type:

Article

Bacterial genera in the fluids from apical periodontitis‐related radicular cysts: An observational study.

Published in:

International Endodontic Journal, 2025, v. 58, n. 6, p. 902, doi. 10.1111/iej.14220

By:

Szaraz, David;
Bohm, Jan;
Cerulova, Sabina;
Bodokyova, Lenka;
Danek, Zdenek;
Machacek, Ctirad;
Borilova Linhartova, Petra

Publication type:

Article

Early life microbiome disbalance impacts neuroendocrine outcomes in pre-pubertal mice in a sexually dimorphic manner.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1504513

By:

Nankova, Bistra B.;
Hu, Furong;
LaGamma, Edmund F.

Publication type:

Article

Scaling laws of bacterial and archaeal plasmids.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61205-2

By:

Maddamsetti, Rohan;
Shyti, Irida;
Wilson, Maggie L.;
Son, Hye-In;
Baig, Yasa;
Zhou, Zhengqing;
Lu, Jia;
You, Lingchong

Publication type:

Article

Advances in molecular genetic systems in malaria.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 6, p. 373, doi. 10.1038/nrmicro3450

By:

de Koning-Ward, Tania F.;
Gilson, Paul R.;
Crabb, Brendan S.

Publication type:

Article

Microbial ecology: Sharing is caring.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 6, p. 328, doi. 10.1038/nrmicro3502

By:

Nunes-Alves, Claudio

Publication type:

Article

Bacterial physiology: Putting the 'BREX' on phage replication.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 3, p. 129, doi. 10.1038/nrmicro3437

By:

Nunes-Alves, Cláudio

Publication type:

Article

Bacterial genetics: Amplified origins of antibiotic resistance.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 6, p. 394, doi. 10.1038/nrmicro3275

By:

Burgess, Darren J.

Publication type:

Article

What has high-throughput sequencing ever done for us?

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 10, p. 664, doi. 10.1038/nrmicro3112

By:

Parkhill, Julian

Publication type:

Article

Bacterial genomics: A new source of antimicrobial targets.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 4, p. 239, doi. 10.1038/nrmicro2771

By:

David, Rachel

Publication type:

Article

You cannot B. cereus.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 2, p. 83, doi. 10.1038/nrmicro2506

By:

Salter, Susannah J.

Publication type:

Article

Genome annotation: man versus machine.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 11, p. 762, doi. 10.1038/nrmicro2462

By:

Petty, Nicola K.

Publication type:

Article

'Slick' operation.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 8, p. 538, doi. 10.1038/nrmicro2407

By:

Seth-Smith, Helena

Publication type:

Article

It's alive!

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 7, p. 468, doi. 10.1038/nrmicro2399

By:

Reid, Adam J.

Publication type:

Article

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana.

Published in:

PLoS Biology, 2011, v. 9, n. 8, p. 1, doi. 10.1371/journal.pbio.1001125

By:

Chan, Eva K. F.;
Rowe, Heather C.;
Corwin, Jason A.;
Joseph, Bindu;
Kliebenstein, Daniel J.

Publication type:

Article

The Undergraduate Genomics Research Initiative.

Published in:

PLoS Biology, 2007, v. 5, n. 5, p. e141, doi. 10.1371/journal.pbio.0050141

By:

Kerfeld, Cheryl A.;
Simons, Robert W.

Publication type:

Article

How Bacterial Communities Expand Functional Repertoires.

Published in:

PLoS Biology, 2006, v. 4, n. 12, p. 2193, doi. 10.1371/journal.pbio.0040430

By:

Versalovic, James;
Relman, David

Publication type:

Article

The Marine Viromes of Four Oceanic Regions.

Published in:

PLoS Biology, 2006, v. 4, n. 11, p. 2121, doi. 10.1371/journal.pbio.0040368

By:

Angly, Florent E.;
Felts, Ben;
Breitbart, Mya;
Salamon, Peter;
Edwards, Robert A.;
Carlson, Craig;
Chan, Amy M.;
Haynes, Matthew;
Kelley, Scott;
Hong Liu;
Mahaffy, Joseph M.;
Mueller, Jennifer E.;
Nulton, Jim;
Olson, Robert;
Parsons, Rachel;
Rayhawk, Steve;
Suttle, Curtis A.;
Rohwer, Forest

Publication type:

Article

The Cobweb of Life Revealed by Genome-Scale Estimates of Horizontal Gene Transfer.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030316

By:

Ge, Fan;
Wang, Li-San;
Kim, Junhyong

Publication type:

Article

Segmentally Variable Genes:A New Perspective on Adaptation.

Published in:

PLoS Biology, 2004, v. 2, n. 4, p. 1, doi. 10.1371/journal.pbio.0020081

By:

Zheng, Yu;
Roberts, Richard J;
Kasif, Simon

Publication type:

Article

Shedding new light on viral photosynthesis.

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 71, doi. 10.1007/s11120-014-0057-x

By:

Puxty, Richard;
Millard, Andrew;
Evans, David;
Scanlan, David

Publication type:

Article

Karyotypic relationships among Equus grevyi, Equus burchelli and domestic horse defined using horse chromosome arm-specific probes.

Published in:

Chromosome Research, 2007, v. 15, n. 6, p. 807, doi. 10.1007/s10577-007-1164-8

By:

P. Musilova;
S. Kubickova;
E. Zrnova;
P. Horin;
J. Vahala;
J. Rubes

Publication type:

Article

Toward metabolic engineering in the context of system biology and synthetic biology: advances and prospects.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 3, p. 1109, doi. 10.1007/s00253-014-6298-y

By:

Liu, Yanfeng;
Shin, Hyun-dong;
Li, Jianghua;
Liu, Long

Publication type:

Article

Evolutionary engineering by genome shuffling.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 9, p. 3877, doi. 10.1007/s00253-014-5616-8

By:

Biot-Pelletier, Damien;
Martin, Vincent

Publication type:

Article

Genome-wide analysis of the Zn(II)Cys zinc cluster-encoding gene family in Aspergillus flavus.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 10, p. 4289, doi. 10.1007/s00253-013-4865-2

By:

Chang, Perng-Kuang;
Ehrlich, Kenneth

Publication type:

Article

TG1 integrase-based system for site-specific gene integration into bacterial genomes.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 9, p. 4039, doi. 10.1007/s00253-012-4491-4

By:

Muroi, Tetsurou;
Kokuzawa, Takaaki;
Kihara, Yoshihiko;
Kobayashi, Ryuichi;
Hirano, Nobutaka;
Takahashi, Hideo;
Haruki, Mitsuru

Publication type:

Article

Metabolic characteristics of the species Variovorax paradoxus.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 2, p. 541, doi. 10.1007/s00253-012-4585-z

By:

Satola, Barbara;
Wübbeler, Jan;
Steinbüchel, Alexander

Publication type:

Article

Expanding the set of rhodococcal Baeyer-Villiger monooxygenases by high-throughput cloning, expression and substrate screening.

Published in:

Applied Microbiology & Biotechnology, 2012, v. 95, n. 6, p. 1479, doi. 10.1007/s00253-011-3823-0

By:

Riebel, A.;
Dudek, H.;
Gonzalo, G.;
Stepniak, P.;
Rychlewski, L.;
Fraaije, M.

Publication type:

Article

The great screen anomaly-a new frontier in product discovery through functional metagenomics.

Published in:

Applied Microbiology & Biotechnology, 2012, v. 93, n. 3, p. 1005, doi. 10.1007/s00253-011-3804-3

By:

Ekkers, David;
Cretoiu, Mariana;
Kielak, Anna;
Elsas, Jan

Publication type:

Article

Efficient cell surface display of Lip2 lipase using C-domains of glycosylphosphatidylinositol-anchored cell wall proteins of Yarrowia lipolytica.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 91, n. 3, p. 645, doi. 10.1007/s00253-011-3265-8

By:

Yuzbasheva, Evgeniya Y.;
Yuzbashev, Tigran v.;
Laptev, Ivan a.;
Konstantinova, Tatiana K.;
Sineoky, Sergey P.

Publication type:

Article

Co-transcription of the celC gene cluster in Clostridium thermocellum.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 90, n. 2, p. 625, doi. 10.1007/s00253-011-3121-x

By:

Newcomb, Michael;
Millen, Jonathan;
Chun-Yu Chen;
Wu, J. H. David

Publication type:

Article

Isolation and characterization of cold-active family VIII esterases from an arctic soil metagenome.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 90, n. 2, p. 573, doi. 10.1007/s00253-011-3132-7

By:

Eun Yu;
Min-A Kwon;
Miae Lee;
Joon Oh;
Ji-Eun Choi;
Ji Young Lee;
Bong-Keun Song;
Dae-Hyun Hahm;
Jae Kwang Song

Publication type:

Article

A bacterial laccase from marine microbial metagenome exhibiting chloride tolerance and dye decolorization ability.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 89, n. 4, p. 1103, doi. 10.1007/s00253-010-2934-3

By:

Zemin Fang;
Tongliang Li;
Quan Wang;
Xuecheng Zhang;
Hui Peng;
Wei Fang;
Yuzhi Hong;
Honghua Ge;
Yazhong Xiao

Publication type:

Article

Bacterial diversities on unaged and aging flue-cured tobacco leaves estimated by 16S rRNA sequence analysis.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 88, n. 2, p. 553, doi. 10.1007/s00253-010-2763-4

By:

Huang, Jingwen;
Yang, Jinkui;
Duan, Yanqing;
Gu, Wen;
Gong, Xiaowei;
Zhe, Wei;
Su, Can;
Zhang, Ke-Qin

Publication type:

Article

Metabolic flux distributions: genetic information, computational predictions, and experimental validation.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 86, n. 5, p. 1243, doi. 10.1007/s00253-010-2506-6

By:

Blank, Lars;
Kuepfer, Lars

Publication type:

Article

Understanding the industrial application potential of lactic acid bacteria through genomics.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 83, n. 4, p. 597, doi. 10.1007/s00253-009-2034-4

By:

Zhu, Yan;
Zhang, Yanping;
Li, Yin

Publication type:

Article

Development of chemically defined medium for Mannheimia succiniciproducens based on its genome sequence.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 79, n. 2, p. 263, doi. 10.1007/s00253-008-1425-2

By:

Hyohak Song;
Tae Yong Kim;
Bo-Kyeong Choi;
Seong Jun Choi;
Nielsen, Lars K.;
Ho Nam Chang;
Sang Yup Lee

Publication type:

Article

Mining Xanthomonas and Streptomyces genomes for new pectinase-encoding sequences and their heterologous expression in Escherichia coli.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 78, n. 6, p. 973, doi. 10.1007/s00253-008-1389-2

By:

Zhizhuang Xiao;
Boyd, Jason;
Grosse, Stephan;
Beauchemin, Manon;
Coupe, Elizabeth;
Lau, Peter

Publication type:

Article

Comparison of methods for total community DNA extraction and purification from compost.

Published in:

Applied Microbiology & Biotechnology, 2007, v. 74, n. 4, p. 918, doi. 10.1007/s00253-006-0704-z

By:

Yang, Zh. H.;
Xiao, Y.;
Zeng, G. M.;
Xu, Zh. Y.;
Liu, Y. Sh.

Publication type:

Article

An in-depth evaluation of metagenomic classifiers for soil microbiomes.

Published in:

Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00561-w

By:

Edwin, Niranjana Rose;
Fitzpatrick, Amy Heather;
Brennan, Fiona;
Abram, Florence;
O'Sullivan, Orla

Publication type:

Article

Welcome to Environmental Microbiome.

Published in:

Environmental Microbiome, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s40793-019-0340-8

By:

Watts, Joy E. M.

Publication type:

Article

Genomic diversity of phages infecting the globally widespread genus Sulfurimonas.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07079-4

By:

Li, Xiaofeng;
Cheng, Ruolin;
Zhang, Chuanxi;
Shao, Zongze

Publication type:

Article

Genome mining for drug discovery: progress at the front end.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2021, v. 48, n. 9/10, p. 1, doi. 10.1093/jimb/kuab044

By:

Baltz, Richard H

Publication type:

Article

Introduction to Special Issue on "Frontiers in Industrial Microbiology and Biotechnology 2019".

Published in:

2019

By:

Baltz, Richard H.;
Gonzalez, Ramon

Publication type:

Editorial

Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 3/4, p. 469, doi. 10.1007/s10295-018-02131-9

By:

Villebro, Rasmus;
Shaw, Simon;
Blin, Kai;
Weber, Tilmann

Publication type:

Article

Synthetic biology, genome mining, and combinatorial biosynthesis of NRPS-derived antibiotics: a perspective.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 635, doi. 10.1007/s10295-017-1999-8

By:

Baltz, Richard H.

Publication type:

Article

Output ordering and prioritisation system (OOPS): ranking biosynthetic gene clusters to enhance bioactive metabolite discovery.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 7, p. 615, doi. 10.1007/s10295-017-1993-1

By:

Peña, Alejandro;
Del Carratore, Francesco;
Cummings, Matthew;
Takano, Eriko;
Breitling, Rainer

Publication type:

Article

Improving the 'tool box' for robust industrial enzymes.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2017, v. 44, n. 4/5, p. 711, doi. 10.1007/s10295-017-1920-5

By:

Littlechild, J.

Publication type:

Article

Phylogeny-guided (meta)genome mining approach for the targeted discovery of new microbial natural products.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2017, v. 44, n. 2, p. 285, doi. 10.1007/s10295-016-1874-z

By:

Kang, Hahk-Soo

Publication type:

Article

Genome neighborhood network reveals insights into enediyne biosynthesis and facilitates prediction and prioritization for discovery.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2016, v. 43, n. 2/3, p. 261, doi. 10.1007/s10295-015-1671-0

By:

Rudolf, Jeffrey;
Yan, Xiaohui;
Shen, Ben

Publication type:

Article