Works matching DE "METHYLCYTOSINE"

Results: 478

NSUN2-mediated cytosine-5 methylation of FSP1 protects acute myeloid leukemia cells from ferroptosis.

Published in:

Molecular Cancer, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12943-025-02394-8

By:

Ye, Wenle;
Zhao, Yanchun;
Zhou, Yutong;
Huang, Jiansong;
He, Xiao;
Ma, Zhixin;
Huang, Xin;
Hu, Chao;
Li, Fenglin;
Ling, Qing;
Wang, Huafeng;
Tong, Hongyan;
Sun, Jie;
Jin, Jie

Publication type:

Article

CX3CL1 promotes M1 macrophage polarization and osteoclast differentiation via NSUN5-mediated m5C modification.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-11046-2

By:

Deng, Zhibin;
Zhong, Wei

Publication type:

Article

Dynamic Changes in Oxidative Stress and Epigenetic Modifications in the Ventral Mesencephalon and Striatum of MPTP-Treated Mice: Implications for Parkinson's Disease Pathogenesis.

Published in:

Neurotoxicity Research, 2025, v. 43, n. 4, p. 1, doi. 10.1007/s12640-025-00748-0

By:

Gallo-Soljancic, Pablo;
De Stefano, Maria Egle;
Gonzalez-Cuello, Ana-Maria;
Fernandez-Villalba, Emiliano;
Godderis, Lode;
Herrero, Maria Trinidad

Publication type:

Article

Author Correction: Base-excision repair pathway shapes 5-methylcytosine deamination signatures in pan-cancer genomes.

Published in:

2025

By:

Silveira, André Bortolini;
Houy, Alexandre;
Ganier, Olivier;
Özemek, Begüm;
Vanhuele, Sandra;
Vincent-Salomon, Anne;
Cassoux, Nathalie;
Mariani, Pascale;
Pierron, Gaelle;
Leyvraz, Serge;
Rieke, Damian;
Picca, Alberto;
Bielle, Franck;
Yaspo, Marie-Laure;
Rodrigues, Manuel;
Stern, Marc-Henri

Publication type:

Correction Notice

Advances in detection and quantification of methylcytosine and its derivatives.

Published in:

Journal of Separation Science, 2019, v. 42, n. 5, p. 1105, doi. 10.1002/jssc.201801100

By:

Asenso, James;
Wang, Liang;
Du, Yan;
Liu, Qing‐hua;
Xu, Bing‐ju;
Guo, Meng‐zhe;
Tang, Dao‐quan

Publication type:

Article

NSUN6 mediates 5‐methylcytosine modification of METTL3 and promotes colon adenocarcinoma progression.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 6, p. 1, doi. 10.1002/jbt.23749

By:

Cui, Yuanbo;
Lv, Pengju;
Zhang, Chunyan

Publication type:

Article

Identification and validation of an m5C-related lncRNA signature for predicting prognosis and immune response in clear cell renal cell carcinoma.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-01987-5

By:

Ao, Shan;
Liang, Leqi;
Peng, Lei;
Yang, Riwei;
Chen, Zugen;
Deng, Tuo

Publication type:

Article

Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07681-0

By:

Halliwell, Dominic Oliver;
Honig, Floris;
Bagby, Stefan;
Roy, Sandipan;
Murrell, Adele

Publication type:

Article

5-Hydroxymethylcytosine Loss in Conjunctival Melanoma.

Published in:

Dermatopathology, 2021, v. 8, n. 2, p. 176, doi. 10.3390/dermatopathology8020023

By:

Stahl, Alexandre;
Riggi, Nicolo;
Nardou, Katya;
Nicolas, Michael;
Kaya, Gurkan;
Moulin, Alexandre

Publication type:

Article

Pharmacologic Ascorbate and DNMT Inhibitors Increase DUOX Expression and Peroxide-Mediated Toxicity in Pancreatic Cancer.

Published in:

Antioxidants, 2023, v. 12, n. 9, p. 1683, doi. 10.3390/antiox12091683

By:

Steers, Garett J.;
O'Leary, Brianne R.;
Du, Juan;
Wagner, Brett A.;
Carroll, Rory S.;
Domann, Frederick E.;
Goswami, Prabhat C.;
Buettner, Garry R.;
Cullen, Joseph J.

Publication type:

Article

Coevolution of the CDCA7-HELLS ICF-related nucleosome remodeling complex and DNA methyltransferases.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.86721

By:

Hironori Funabiki;
Wassing, Isabel E.;
Qingyuan Jia;
Ji-Dung Luo;
Carroll, Thomas

Publication type:

Article

Candidate genes responsible for early key events of phenobarbital-promoted mouse hepatocellular tumorigenesis based on differentiation of regulating genes between wild type mice and humanized chimeric mice.

Published in:

Toxicology Research, 2017, v. 6, n. 6, p. 795, doi. 10.1039/c7tx00163k

By:

Ohara, Ayako;
Takahashi, Yasuhiko;
Kondo, Miwa;
Okuda, Yu;
Takeda, Shuji;
Kushida, Masahiko;
Kobayashi, Kentaro;
Sumida, Kayo;
Yamada, Tomoya

Publication type:

Article

Urinary Measurement of Epigenetic DNA Modifications: A Non‐Invasive Assessment of the Whole‐Body Epigenetic Status in Healthy Subjects and Colorectal Cancer Patients.

Published in:

ChemistryOpen, 2016, v. 5, n. 6, p. 550, doi. 10.1002/open.201600103

By:

Rozalski, Rafal;
Gackowski, Daniel;
Siomek‐Gorecka, Agnieszka;
Olinski, Ryszard;
Banaszkiewicz, Zbigniew

Publication type:

Article

Effects of Tet-mediated Oxidation Products of 5-Methylcytosine on DNA Transcription in vitro and in Mammalian Cells.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep07052

By:

Changjun You;
Debin Ji;
Xiaoxia Dai;
Yinsheng Wang

Publication type:

Article

Single Molecule Investigation of Ag<sup>+</sup> Interactions with Single Cytosine-, Methylcytosine- and Hydroxymethylcytosine-Cytosine Mismatches in a Nanopore.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05883

By:

Yong Wang;
Bin-Quan Luan;
Zhiyu Yang;
Xinyue Zhang;
Brandon Ritzo;
Kent Gates;
Li-Qun Gu

Publication type:

Article

Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04246

By:

Horton, John R.;
Nugent, Rebecca L.;
Li, Andrew;
Mabuchi, Megumu Yamada;
Fomenkov, Alexey;
Cohen-Karni, Devora;
Griggs, Rose M.;
Xing Zhang;
Wilson, Geoffrey G.;
Yu Zheng;
Shuang-yong Xu;
Xiaodong Cheng

Publication type:

Article

Alteration of mRNA 5-Methylcytosine Modification in Neurons After OGD/R and Potential Roles in Cell Stress Response and Apoptosis.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.633681

By:

Jian, Huan;
Zhang, Chi;
Qi, ZhangYang;
Li, Xueying;
Lou, Yongfu;
Kang, Yi;
Deng, Weimin;
Lv, Yigang;
Wang, Chaoyu;
Wang, Wei;
Shang, Shenghui;
Hou, Mengfan;
Zhou, Hengxing;
Feng, Shiqing

Publication type:

Article

Ultrafast excited‐state dynamics of gas‐phase 5‐methylcytosine tautomers.

Published in:

Journal of the Chinese Chemical Society, 2022, v. 69, n. 1, p. 107, doi. 10.1002/jccs.202100254

By:

Ho, Jr‐Wei;
Cheng, Po‐Yuan

Publication type:

Article

Accurate cross-species 5mC detection for Oxford Nanopore sequencing in plants with DeepPlant.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-58576-x

By:

Chen, He-Xu;
Liu, Zhen-Dong;
Bai, Xin;
Wu, Bo;
Song, Rong;
Yao, Hui-Cong;
Chen, Ying;
Chi, Wei;
Hua, Qian;
Cheng, Liang;
Xiao, Chuan-Le

Publication type:

Article

Nitric oxide inhibits ten-eleven translocation DNA demethylases to regulate 5mC and 5hmC across the genome.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-56928-1

By:

Palczewski, Marianne B.;
Kuschman, Hannah Petraitis;
Hoffman, Brian M.;
Kathiresan, Venkatesan;
Yang, Hao;
Glynn, Sharon A.;
Wilson, David L.;
Kool, Eric T.;
Montfort, William R.;
Chang, Jenny;
Petenkaya, Aydolun;
Chronis, Constantinos;
Cundari, Thomas R.;
Sappa, Sushma;
Islam, Kabirul;
McVicar, Daniel W.;
Fan, Yu;
Chen, Qingrong;
Meerzaman, Daoud;
Sierk, Michael

Publication type:

Article

Gene body methylation evolves during the sustained loss of parental care in the burying beetle.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50359-0

By:

Sarkies, Peter;
Westoby, Jennifer;
Kilner, Rebecca Mary;
Mashoodh, Rahia

Publication type:

Article

Rockfish: A transformer-based model for accurate 5-methylcytosine prediction from nanopore sequencing.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49847-0

By:

Stanojević, Dominik;
Li, Zhe;
Bakić, Sara;
Foo, Roger;
Šikić, Mile

Publication type:

Article

Functional characteristics of DNA N6-methyladenine modification based on long-read sequencing in pancreatic cancer.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 2, p. 150, doi. 10.1093/bfgp/elad021

By:

Zhou, Dianshuang;
Guo, Shiwei;
Wang, Yangyang;
Zhao, Jiyun;
Liu, Honghao;
Zhou, Feiyang;
Huang, Yan;
Gu, Yue;
Jin, Gang;
Zhang, Yan

Publication type:

Article

A context dependent role for DNA methylation in bivalves.

Published in:

Briefings in Functional Genomics, 2014, v. 13, n. 3, p. 217, doi. 10.1093/bfgp/elt054

By:

Gavery, Mackenzie R.;
Roberts, Steven B.

Publication type:

Article

TET proteins: on the frenetic hunt for new cytosine modifications.

Published in:

Briefings in Functional Genomics, 2013, v. 12, n. 3, p. 191, doi. 10.1093/bfgp/elt010

By:

Delatte, Benjamin;
Fuks, François

Publication type:

Article

CagA increases DNA methylation and decreases PTEN expression in human gastric cancer.

Published in:

Molecular Medicine Reports, 2019, v. 19, n. 1, p. 309

By:

Zhang, Baogui;
Zhang, Xiaobei;
Jin, Meng;
Hu, Lei;
Zang, Mingde;
Qiu, Weilong;
Wang, Shouqi;
Liu, Bingya;
Liu, Shiqi;
Guo, Dongli

Publication type:

Article

Restored expression levels of TET1 decrease the proliferation and migration of renal carcinoma cells.

Published in:

Molecular Medicine Reports, 2015, v. 12, n. 4, p. 4837, doi. 10.3892/mmr.2015.4058

By:

MIN FAN;
XIAOZHOU HE;
XIANLIN XU

Publication type:

Article

Reassessment of Viroid RNA Cytosine Methylation Status at the Single Nucleotide Level.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 4, p. 357, doi. 10.3390/v11040357

By:

Di Serio, Francesco;
Torchetti, Enza Maria;
Daròs, José-Antonio;
Navarro, Beatriz

Publication type:

Article

Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia.

Published in:

Epigenetics & Chromatin, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0252-7

By:

Wernig-Zorc, Sara;
Yadav, Mukesh Pratap;
Kopparapu, Pradeep Kumar;
Bemark, Mats;
Kristjansdottir, Hallgerdur Lind;
Andersson, Per-Ola;
Kanduri, Chandrasekhar;
Kanduri, Meena

Publication type:

Article

Decoding the role of TET family dioxygenases in lineage specification.

Published in:

Epigenetics & Chromatin, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0228-7

By:

Wu, Xinwei;
Li, Gang;
Xie, Ruiyu

Publication type:

Article

Uncoordinated expression of DNA methylation-related enzymes in human cancer.

Published in:

Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0170-0

By:

Jiao Liu;
Xiuliang Cui;
Jinhua Jiang;
Dan Cao;
Yufei He;
Hongyang Wang

Publication type:

Article

Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during pronuclear development in equine zygotes produced by ICSI.

Published in:

Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0120-x

By:

Heras, Sonia;
Smits, Katrien;
De Schauwer, Catharina;
Van Soom, Ann

Publication type:

Article

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA.

Published in:

Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0123-7

By:

Skvortsova, Ksenia;
Zotenko, Elena;
Phuc-Loi Luu;
Gould, Cathryn M.;
Nair, Shalima S.;
Clark, Susan J.;
Stirzaker, Clare

Publication type:

Article

Changes of 5-hydroxymethylcytosine distribution during myeloid and lymphoid differentiation of CD34+ cells.

Published in:

Epigenetics & Chromatin, 2016, v. 9, p. 1, doi. 10.1186/s13072-016-0070-8

By:

Tekpli, Xavier;
Urbanucci, Alfonso;
Hashim, Adnan;
Vågbø, Cathrine B.;
Lyle, Robert;
Kringen, Marianne K.;
Staff, Anne Cathrine;
Dybedal, Ingunn;
Mills, Ian G.;
Klungland, Arne;
Staerk, Judith

Publication type:

Article

Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0016-6

By:

Breiling, Achim;
Lyko, Frank

Publication type:

Article

Genome-wide assays that identify and quantify modified cytosines in human disease studies.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/1756-8935-8-5

By:

Ulahannan, Netha;
Greally, John M.

Publication type:

Article

Genome-wide assays that identify and quantify modified cytosines in human disease studies.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/1756-8935-8-5

By:

Ulahannan, Netha;
Greally, John M.

Publication type:

Article

Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing.

Published in:

Epigenetics & Chromatin, 2013, v. 6, n. 1, p. 2, doi. 10.1186/1756-8935-6-33

By:

Masser, Dustin R.;
Berg, Arthur S.;
Freeman, Willard M.

Publication type:

Article

5-hydroxymethylcytosine and its potential roles in development and cancer.

Published in:

Epigenetics & Chromatin, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-8935-6-10

By:

Pfeifer, Gerd P.;
Kadam, Swati;
Seung-Gi Jin

Publication type:

Article

Genome-wide analysis reveals TET-and TDGmediated 5-methylcytosine oxidation dynamics.

Published in:

2013

By:

Li Shen;
Hao Wu;
Diep, Dinh;
D'Alessio, Ana C.;
Fung, Alan;
Kun Zhang;
Yi Zhang

Publication type:

Conference Paper/Materials

Genome-wide analysis reveals TET-and TDGmediated 5-methylcytosine oxidation dynamics.

Published in:

2013

By:

Li Shen;
Hao Wu;
Diep, Dinh;
D'Alessio, Ana C.;
Fung, Alan;
Kun Zhang;
Yi Zhang

Publication type:

Conference Paper/Materials

Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin.

Published in:

2013

By:

Morgan, Garry T.;
Jones, Peter L.;
Bellini, Michel

Publication type:

Conference Paper/Materials

DNA modifications: Another stable base in DNA.

Published in:

Nature Chemistry, 2014, v. 6, n. 12, p. 1031, doi. 10.1038/nchem.2115

By:

Brazauskas, Pijus;
Kriaucionis, Skirmantas

Publication type:

Article

Ultrastructural features, chromium content and in situ immunodetection of 5-methyl-cytosine following Cr (VI) treatment in two strains of Scenedesmus acutus M. (Chlorophyceae) with different chromium sensitivity.

Published in:

European Journal of Phycology, 2016, v. 51, n. 3, p. 294, doi. 10.1080/09670262.2016.1157902

By:

Cozza, Davide;
Torelli, Anna;
Veltri, Alessandra;
Ferrari, Michele;
Marieschi, Matteo;
Cozza, Radiana

Publication type:

Article

Chemical and enzymatic modifications of 5-methylcytosine at the intersection of DNA damage, repair, and epigenetic reprogramming.

Published in:

PLoS ONE, 2022, v. 17, n. 8, p. 1, doi. 10.1371/journal.pone.0273509

By:

Baljinnyam, Tuvshintugs;
Sowers, Mark L.;
Hsu, Chia Wei;
Conrad, James W.;
Herring, Jason L.;
Hackfeld, Linda C.;
Sowers, Lawrence C.

Publication type:

Article

Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation.

Published in:

Age (0161-9152), 2016, v. 38, n. 3, p. 1, doi. 10.1007/s11357-016-9914-1

By:

Masser, Dustin R.;
Stanford, David R.;
Hadad, Niran;
Giles, Cory B.;
Wren, Jonathan D.;
Sonntag, William E.;
Richardson, Arlan;
Freeman, Willard M.

Publication type:

Article

Decrease in cytosine methylation at CpG island shores and increase in DNA fragmentation during zebrafish aging.

Published in:

Age (0161-9152), 2014, v. 36, n. 1, p. 103, doi. 10.1007/s11357-013-9548-5

By:

Shimoda, Nobuyoshi;
Izawa, Toshiaki;
Yoshizawa, Akio;
Yokoi, Hayoto;
Kikuchi, Yutaka;
Hashimoto, Naohiro

Publication type:

Article

Hydroxymethylation of microRNA-365-3p Regulates Nociceptive Behaviors via Kcnh2.

Published in:

Journal of Neuroscience, 2016, v. 36, n. 9, p. 2769, doi. 10.1523/JNEUROSCI.3474-15.2016

By:

Zhiqiang Pan;
Ming Zhang;
Tao Ma;
Zhou-Ya Xue;
Guo-Fang Li;
Ling-Yun Hao;
Li-Jiao Zhu;
Yan-Qiang Li;
Hai-Lei Ding;
Jun-Li Cao

Publication type:

Article

The emerging role of DNA methylation in epileptogenesis.

Published in:

Epilepsia (Series 4), 2012, v. 53, p. 11, doi. 10.1111/epi.12031

By:

Kobow, Katja;
Blümcke, Ingmar

Publication type:

Article

i5mC-DCGA: an improved hybrid network framework based on the CBAM attention mechanism for identifying promoter 5mC sites.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10154-z

By:

Jia, Jianhua;
Lei, Rufeng;
Qin, Lulu;
Wei, Xin

Publication type:

Article