Works about METAGENOMICS

Results: 5000

Testing the limits of short-reads metagenomic classifications programs in wastewater treating microbial communities.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-07734-8

By:

Di Gloria, Leandro;
Casbarra, Lorenzo;
Lotti, Tommaso;
Ramazzotti, Matteo

Publication type:

Article

Metagenomic insights into resistance trends related to microbial VB12 synthesis in eutrophic urban lakes.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-06125-3

By:

Lan, Ning;
Mao, Chengzhi;
Chen, Min;
Wang, Xuan;
Bai, Shuheng;
Ren, Juan

Publication type:

Article

Differences of the respiratory microbiota between children suffering from community acquired pneumonia with presence or absence of asthma.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-04847-y

By:

Chen, Lei;
Chen, Huan;
Lv, Tian;
Guo, Xiaolei;
Wu, Weiwei;
Zhao, Deyu;
Liu, Feng

Publication type:

Article

Application of Pan-Viral Metagenomic Sequencing on United States Air Force Academy Wastewater to Uncover Potential Causes of Acute Gastroenteritis.

Published in:

Military Medicine, 2025, v. 190, n. 7/8, p. e1570, doi. 10.1093/milmed/usae518

By:

Mechikoff, Michael A;
Collins, John P;
Golder, Philip;
Ingersoll, Cullen M;
McGarry, Riley E;
Lu, Xiang-Jun;
Gokden, Alper;
Cuff, Anastasia;
Webber, Bryant J;
Wallace, Andrew B;
Steel, J. Jordan;
Wickiser, J. Kenneth;
Balboni, Armand L

Publication type:

Article

Gut microbiome in colorectal cancer: metagenomics from bench to bedside Open Access.

Published in:

JNCI Cancer Spectrum, 2025, v. 9, n. 3, p. 1, doi. 10.1093/jncics/pkaf026

By:

Esfahani, Amir Torshizi;
Zafarjafarzadeh, Nikta;
Vakili, Fatemeh;
Bizhanpour, Anahita;
Mashaollahi, Amirhesam;
Kordestani, Bita Karimi;
Baratinamin, Mahdieh;
Mohammadpour, Somayeh

Publication type:

Article

高温和中高温大曲品质差异分析.

Published in:

China Brewing, 2025, v. 44, n. 6, p. 55, doi. 10.11882/j.issn.0254-5071.2025.06.009

By:

赵佳宇;
王玉荣;
侯强川;
倪慧;
张海波;
屈定武

Publication type:

Article

Impact of sample multiplexing on detection of bacteria and antimicrobial resistance genes in pig microbiomes using long-read sequencing.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1597804

By:

Ivanova, Mirena;
Aarestrup, Frank M.;
Otani, Saria

Publication type:

Article

Autoinducer‐2 Quorum Sensing Is an Active Universal Signaling System in Sociomicrobiology.

Published in:

Journal of Basic Microbiology, 2025, v. 65, n. 7, p. 1, doi. 10.1002/jobm.70024

By:

Liu, Dingqi;
Zhang, Wei;
Zhu, Li;
Gong, Jinghai;
Huang, Yi;
Li, Zhou;
He, Jin

Publication type:

Article

Rapid and sustained differentiation of disease-suppressive phyllosphere microbiomes in tomato following experimental microbiome selection.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00734-1

By:

Ehau-Taumaunu, Hanareia;
Bell, Terrence H.;
Sadeghi, Javad;
Hockett, Kevin L.

Publication type:

Article

Endometrial microbiome in reproductive failure: The possibility of metagenomic analysis.

Published in:

Clinical & Experimental Reproductive Medicine, 2025, v. 52, n. 2, p. 107, doi. 10.5653/cerm.2024.07171

By:

Han, Ae Ra

Publication type:

Article

Overview of Microorganisms: Bacterial Microbiome, Mycobiome, Virome Identified Using Next-Generation Sequencing, and Their Application to Ophthalmic Diseases.

Published in:

Microorganisms, 2025, v. 13, n. 6, p. 1300, doi. 10.3390/microorganisms13061300

By:

Asao, Kazunobu;
Hashida, Noriyasu

Publication type:

Article

It Is Useless to Resist: Biofilms in Metalworking Fluid Systems.

Published in:

Life (2075-1729), 2025, v. 15, n. 6, p. 890, doi. 10.3390/life15060890

By:

von Känel, Giulia;
Steinmann, Lara Ylenia;
Mauz, Britta;
Lukesch, Robert;
Küenzi, Peter

Publication type:

Article

The Systemic Impact of Helicobacter pylori Infection on the Microbiome of Whole Digestive Tract Based on Mucosal, Gastric Juice, and Fecal Specimens.

Published in:

Helicobacter, 2025, v. 30, n. 3, p. 1, doi. 10.1111/hel.70047

By:

Wang, Yuxin;
Zhou, Kai;
Zhang, Yuexi;
Li, Cailing;
Zhang, Yuxin;
Ren, Xinlu;
Mi, Changmin;
Ma, Lingling;
Duan, Yuqi;
Liu, Mengqi;
Ping, Guangjie;
Tian, Xueli;
Song, Zhiqiang

Publication type:

Article

Bacterial community composition and function in different habitats in Antarctic Fildes region revealed by high-throughput sequencing.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1524681

By:

Zhang, Yi-He;
Hu, Yong-Qiang;
Zeng, Yin-Xin;
Hu, Ting;
Han, Wei;
Du, Yu;
Hu, Zhong;
Meng, Shan-Shan

Publication type:

Article

Novel potential biomarkers for predicting childhood caries via metagenomic analysis.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1522970

By:

Zhang, Hui;
Zheng, Xiao;
Huang, Yongmao;
Zou, Yuanqiang;
Zhang, Tao;
Repo, Maria Alice;
Yin, Meixiang;
You, Yang;
Jie, Zhuye;
Xu, Wen-an

Publication type:

Article

Infected pericardial effusion caused by Prevotella intermedia : a rare diagnosis.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1612282

By:

Xu, Wan;
Han, Dan;
Chen, Tianyang;
Wang, Qian

Publication type:

Article

Tropheryma whipplei and Giardia intestinalis Co-Infection: Metagenomic Analysis During Infection and the Recovery Follow-Up.

Published in:

Infectious Disease Reports, 2025, v. 17, n. 3, p. 62, doi. 10.3390/idr17030062

By:

Anselmo, Anna;
Rizzo, Fabiana;
Gervasi, Elena;
Corrent, Luca;
Ciammaruconi, Andrea;
Fillo, Silvia;
Fortunato, Antonella;
Marella, Anna Maria;
Costantini, Silvia;
Baldassari, Luca;
Lista, Florigio;
Ciervo, Alessandra

Publication type:

Article

Discovery of a Novel Parahenipavirus , Parahenipavirus_GH, in Shrews in South Korea, 2022.

Published in:

Viruses (1999-4915), 2025, v. 17, n. 6, p. 867, doi. 10.3390/v17060867

By:

Sim, Gyuri;
Choi, Chi-Hwan;
Lee, Minji;
Lee, Hak Seon;
Kim, Seong Yoon;
Lee, Seung Hun;
Lee, Hee Il;
Chung, Yoon-Seok

Publication type:

Article

Three Distinct Circovirids Identified in a Tapeworm Recovered from a Bobcat (Lynx rufus).

Published in:

Viruses (1999-4915), 2025, v. 17, n. 6, p. 745, doi. 10.3390/v17060745

By:

Žuštra, Ayla;
Howard, April;
Schwartz, Katie;
Day, Ron;
Dietrich, Jaclyn;
Sobotyk, Caroline;
Kraberger, Simona;
Varsani, Arvind

Publication type:

Article

Bacterial evolution: An intriguing new bacterial phylum.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 8, p. 459, doi. 10.1038/nrmicro3534

By:

Attar, Naomi

Publication type:

Article

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 7, p. 439, doi. 10.1038/nrmicro3468

By:

Prosser, James I.

Publication type:

Article

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 6, p. 360, doi. 10.1038/nrmicro3451

By:

Franzosa, Eric A.;
Hsu, Tiffany;
Sirota-Madi, Alexandra;
Shafquat, Afrah;
Abu-Ali, Galeb;
Morgan, Xochitl C.;
Huttenhower, Curtis

Publication type:

Article

Rising to the challenge: accelerated pace of discovery transforms marine virology.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 3, p. 147, doi. 10.1038/nrmicro3404

By:

Brum, Jennifer R.;
Sullivan, Matthew B.

Publication type:

Article

What is a resistance gene? Ranking risk in resistomes.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 2, p. 116, doi. 10.1038/nrmicro3399

By:

Martínez, José L.;
Coque, Teresa M.;
Baquero, Fernando

Publication type:

Article

Voyage to the bottom of the 'seaquence'.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 9, p. 597, doi. 10.1038/nrmicro3341

By:

Wash, Rachael;
Soria, Carmen Diaz

Publication type:

Article

Metagenomics: Why stop here?

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 7, p. 461, doi. 10.1038/nrmicro3300

By:

Nunes-Alves, Cláudio

Publication type:

Article

Adding genomic 'foliage' to the tree of life.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 2, p. 78, doi. 10.1038/nrmicro3203

By:

Walker, Alan

Publication type:

Article

Environmental microbiology: Exploring diversity with single-cell genomics.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 9, p. 598, doi. 10.1038/nrmicro3095

By:

Hofer, Ursula

Publication type:

Article

Competition sensing: the social side of bacterial stress responses.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 4, p. 285, doi. 10.1038/nrmicro2977

By:

Cornforth, Daniel M.;
Foster, Kevin R.

Publication type:

Article

Looking inwards.

Published in:: Nature Reviews Microbiology, 2013, v. 11, n. 3, p. 143, doi. 10.1038/nrmicro2987
Publication type:: Article

The microbiome explored: recent insights and future challenges.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 3, p. 213, doi. 10.1038/nrmicro2973

By:

Blaser, Martin;
Bork, Peer;
Fraser, Claire;
Knight, Rob;
Wang, Jun

Publication type:

Article

The cultural revolution.

Published in:: Nature Reviews Microbiology, 2013, v. 11, n. 1, p. 1, doi. 10.1038/nrmicro2948
Publication type:: Article

Metagenomics with guts.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 10, p. 674, doi. 10.1038/nrmicro2879

By:

Zarowiecki, Magdalena

Publication type:

Article

A day off in Denmark.

Published in:: Nature Reviews Microbiology, 2012, v. 10, n. 10, p. 667, doi. 10.1038/nrmicro2892
Publication type:: Article

Going viral: next-generation sequencing applied to phage populations in the human gut.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 9, p. 607, doi. 10.1038/nrmicro2853

By:

Reyes, Alejandro;
Semenkovich, Nicholas P.;
Whiteson, Katrine;
Rohwer, Forest;
Gordon, Jeffrey I.

Publication type:

Article

Microbial interactions: from networks to models.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 8, p. 538, doi. 10.1038/nrmicro2832

By:

Faust, Karoline;
Raes, Jeroen

Publication type:

Article

Welcome to the plasmidome.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 6, p. 379, doi. 10.1038/nrmicro2804

By:

Walker, Alan

Publication type:

Article

Where Next for Microbiome Research?

Published in:

PLoS Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1371/journal.pbio.1002050

By:

Waldor, Matthew K.;
Tyson, Gene;
Borenstein, Elhanan;
Ochman, Howard;
Moeller, Andrew;
Finlay, B. Brett;
Kong, Heidi H.;
Gordon, Jeffrey I.;
Nelson, Karen E.;
Dabbagh, Karim;
Smith, Hamilton

Publication type:

Article

Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 135, doi. 10.1007/s11120-014-0066-9

By:

Davison, Michelle;
Hall, Eric;
Zare, Richard;
Bhaya, Devaki

Publication type:

Article

A genome analysis based on repeat sharing gene networks.

Published in:

Natural Computing, 2015, v. 14, n. 3, p. 403, doi. 10.1007/s11047-014-9437-6

By:

Castellini, Alberto;
Franco, Giuditta;
Milanese, Alessio

Publication type:

Article

Identification of Microbial Community in Otomycosis by Metagenomic Next Generation Sequencing (mNGS): Potential Implication of Treatment with Terbinafine.

Published in:

Mycopathologia, 2023, v. 188, n. 6, p. 995, doi. 10.1007/s11046-023-00791-5

By:

Xu, Shuai;
Zhang, Xin;
Yang, Qianqian;
Li, Jianfeng;
Yu, Zhaoyan

Publication type:

Article

Analysis of Black Fungal Biofilms Occurring at Domestic Water Taps (I): Compositional Analysis Using Tag-Encoded FLX Amplicon Pyrosequencing.

Published in:

Mycopathologia, 2013, v. 175, n. 5/6, p. 387, doi. 10.1007/s11046-013-9618-3

By:

Heinrichs, Guido;
Hübner, Iris;
Schmidt, Carsten;
Hoog, G.;
Haase, Gerhard

Publication type:

Article

Efficient control of dissolved and colloidal substances in raw papermaking whitewater by immobilized thermophilic esterase from a metagenomic library.

Published in:

Cellulose, 2024, v. 31, n. 7, p. 4053, doi. 10.1007/s10570-024-05881-1

By:

Xie, Qiuyue;
Zhang, Zedong

Publication type:

Article

High-throughput amplicon sequencing demonstrates extensive diversity of xylanase genes in the sediment of soda lake Dabusu.

Published in:

Biotechnology Letters, 2019, v. 41, n. 3, p. 409, doi. 10.1007/s10529-019-02646-w

By:

Wang, Guozeng;
Ren, Yaxin;
Ng, Tzi Bun;
Streit, Wolfgang R.;
Ye, Xiuyun

Publication type:

Article

Characterization of an inhibitor-resistant endo-1,4-β-mannanase from the gut microflora metagenome of Hermetia illucens.

Published in:

Biotechnology Letters, 2018, v. 40, n. 9/10, p. 1377, doi. 10.1007/s10529-018-2596-2

By:

Song, Jaeeun;
Kim, Su-Yeon;
Kim, Dae-Hyuk;
Lee, Young-Seok;
Sim, Joon-Soo;
Hahn, Bum-Soo;
Lee, Chang-Muk

Publication type:

Article

Primary exploring the value of metagenomic next‐generation sequencing in detecting pathogenic bacteria of cholangitis with biliary atresia after Kasai operation.

Published in:

Pediatric Surgery International, 2022, v. 38, n. 12, p. 1931, doi. 10.1007/s00383-022-05254-4

By:

Yu, Pu;
Li, Mengdi;
Sun, Rongjuan;
Zhan, Jianghua;
Pan, Yongkang

Publication type:

Article

Metagenomic views on taxonomic and functional profiles of the Himalayan Tsomgo cold lake and unveiling its deterzome potential.

Published in:

Current Genetics, 2022, v. 68, n. 5/6, p. 565, doi. 10.1007/s00294-022-01247-x

By:

Singh, Ashutosh Kumar;
Kumari, Megha;
Sharma, Nitish;
Rai, Amit Kumar;
Singh, Sudhir P.

Publication type:

Article

The metagenomics worldwide research.

Published in:

Current Genetics, 2017, v. 63, n. 5, p. 819, doi. 10.1007/s00294-017-0693-8

By:

Garrido-Cardenas, Jose;
Manzano-Agugliaro, Francisco

Publication type:

Article

Anaerobic digestion of chemically enhanced primary treatment (CEPT) sludge and the microbial community structure.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 20, p. 8975, doi. 10.1007/s00253-016-7730-2

By:

Ju, Feng;
Wang, Yubo;
Lau, Frankie;
Fung, W.;
Huang, Danping;
Xia, Yu;
Zhang, Tong

Publication type:

Article

Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 19, p. 8537, doi. 10.1007/s00253-016-7656-8

By:

Chimienti, Guglielmina;
Piredda, Roberta;
Pepe, Gabriella;
Werf, Inez;
Sabbatini, Luigia;
Crecchio, Carmine;
Ricciuti, Patrizia;
D'Erchia, Anna;
Manzari, Caterina;
Pesole, Graziano

Publication type:

Article