Works matching DE "METAGENOMICS"

Results: 5000

Clinical Features and Value of Tracheal Aspirate Metagenomic Next-Generation Sequencing for Severe Pneumonia in Children in Pediatric Intensive Care Unit.

Published in:

Polish Journal of Microbiology, 2025, v. 74, n. 2, p. 192, doi. 10.33073/pjm-2025-016

By:

YU, XINYAN;
LIANG, JIUCHAO;
YANG, RUI;
GAI, WEI;
ZHENG, YAFENG

Publication type:

Article

Characteristics and Clinical Significance of Gut Microbiota in Patients with Invasive Pulmonary Aspergillosis.

Published in:

Polish Journal of Microbiology, 2025, v. 74, n. 2, p. 131, doi. 10.33073/pjm-2025-011

By:

CAO, JIAQI;
HE, QIAN;
ZHANG, MING;
ZHOU, RONG;
FENG, CHUNLAI

Publication type:

Article

Unveiling viral diversity and dynamics in mosquitoes through metagenomic analysis in Guizhou Province, China.

Published in:

Infectious Diseases of Poverty, 2025, v. 14, n. 1, p. 1, doi. 10.1186/s40249-025-01321-9

By:

Linghu, Yan;
Hu, Rui-Si;
Tang, Xiao-Min;
Li, Rong-Ting;
Li, Wei-Yi;
Wu, Jia-Hong

Publication type:

Article

Comparative evaluation of trimethylated α-, β-, and γ-cyclodextrins as optimal dispersants for ready biodegradability testing of poorly water-soluble substances.

Published in:

Journal of Pesticide Science, 2024, v. 49, n. 4, p. 210, doi. 10.1584/jpestics.D24-015

By:

Yoshinari Takano;
Saki Takekoshi;
Kotaro Takano;
Yoshihide Matoba;
Makiko Mukumoto;
Keisei Sowa;
Yuki Kitazumi;
Osamu Shirai

Publication type:

Article

Comparative metagenomics indicates metabolic niche differentiation of benthic and planktonic Woeseiaceae.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00732-3

By:

Viver, Tomeu;
Knittel, Katrin;
Amann, Rudolf;
Orellana, Luis H.

Publication type:

Article

Microbiome multi-omics analysis reveals novel biomarkers and mechanisms linked with CD etiopathology.

Published in:

Biomarker Research, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40364-025-00802-1

By:

Serrano-Gómez, Gerard;
Yañez, Francisca;
Soler, Zaida;
Pons-Tarin, Marc;
Mayorga, Luis;
Herrera-deGuise, Claudia;
Borruel, Natalia;
Rodriguez-Sinovas, Antonio;
Consegal, Marta;
Manjón, Isaac;
Vega-Abellaneda, Sara;
Manichanh, Chaysavanh

Publication type:

Article

Gut Microbiota in Patients with Tuberculosis Associated with Different Drug Exposures of Antituberculosis Drugs.

Published in:

Clinical Pharmacology & Therapeutics, 2025, v. 118, n. 1, p. 252, doi. 10.1002/cpt.3687

By:

Zhu, Yue;
Liu, Qiao;
Alffenaar, Jan‐Willem;
Wang, Shanshan;
Cao, Jiayi;
Dong, Shulan;
Zhou, Xiangkang;
Li, Xiaoxue;
Li, Xuliang;
Xiong, Haiyan;
Zhu, Limei;
Hu, Yi;
Wang, Weibing

Publication type:

Article

Microbiota Composition of Buffalo Colostrum and Characterization of Potential Probiotic Bacteria With High Exopolysaccharide Production and Cholesterol Assimilation Capacity.

Published in:

Journal of Food Quality, 2025, v. 2025, p. 1, doi. 10.1155/jfq/4406517

By:

Ertürkmen, P.;
Di Cerbo, Alessandro

Publication type:

Article

Annual dynamics and metagenomics of marine vesicles: One more layer of complexity in the dissolved organic fraction.

Published in:

Limnology & Oceanography, 2025, v. 70, n. 5, p. 1315, doi. 10.1002/lno.70031

By:

Nekrouf, Nadefa Adda;
Maestre‐Carballa, Lucia;
Lluesma‐Gomez, Monica;
Martinez‐Hernandez, Francisco;
Martinez‐Garcia, Manuel

Publication type:

Article

Identification of the Endosymbiotic Bacteria in Paederus fuscipes (Coleoptera: Staphylinidae) Collected in the Student Hostels of UiTM Puncak Alam, Selangor.

Published in:

Malaysian Journal of Medicine & Health Sciences, 2025, v. 21, n. 3, p. 129, doi. 10.47836/mjmhs.21.3.16

By:

Ahmad, Azwandi;
Nazri, Farah Wardina;
Othman, Ahmad Azani

Publication type:

Article

Validation and development of eDNA metabarcoding primers for comprehensive assessment of Chinese amphibians.

Published in:

Integrative Zoology, 2025, v. 20, n. 3, p. 504, doi. 10.1111/1749-4877.12832

By:

WU, Dongyi;
LEE, Pingshin;
CHEN, Hongman;
YAN, Fang;
HUANG, Jiayue;
HE, Yanhong;
WU, Ruiyao;
YUAN, Zhiyong

Publication type:

Article

New groups of highly divergent proteins in families as old as cellular life with important biological functions in the ocean.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00697-3

By:

Sussfeld, Duncan;
Lannes, Romain;
Corel, Eduardo;
Bernard, Guillaume;
Martin, Pierre;
Bapteste, Eric;
Pelletier, Eric;
Lopez, Philippe

Publication type:

Article

Genome-resolved metagenomics from short-read sequencing data in the era of artificial intelligence.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01625-x

By:

Qayyum, Hajra;
Ishaq, Zaara;
Ali, Amjad;
Kayani, Masood Ur Rehman;
Huang, Lisu

Publication type:

Article

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.89862

By:

Veseli, Iva;
Yiqun T. Chen;
Schechter, Matthew S.;
Vanni, Chiara;
Fogarty, Emily C.;
Watson, Andrea R.;
Jabri, Bana;
Blekhman, Ran;
Willis, Amy D.;
Yu, Michael K.;
Fernàndez-Guerra, Antonio;
Füssel, Jessika;
Eren, A. Murat

Publication type:

Article

Suitability of wetland microbial consortium for enhanced and sustained power generation from distillery effluent in microbial fuel cell.

Published in:

Energy Sources Part A: Recovery, Utilization & Environmental Effects, 2025, v. 47, n. 1, p. 4095, doi. 10.1080/15567036.2020.1864515

By:

Singh, Aradhana;
Kaushik, Anubha

Publication type:

Article

Uncovering functional deterioration in the rhizosphere microbiome associated with post-green revolution wheat cultivars.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00723-4

By:

Smith, Monique E.;
Kavamura, Vanessa N.;
Hughes, David;
Mendes, Rodrigo;
Lund, George;
Clark, Ian;
Mauchline, Tim H.

Publication type:

Article

Application of Metagenomic and Targeted Next-Generation Sequencing in Diagnosis of Pulmonary Tuberculosis in Bronchoalveolar Lavage Fluid.

Published in:

Infection & Drug Resistance, 2025, v. 18, p. 2229, doi. 10.2147/IDR.S514090

By:

Yang, Zhen;
Liu, Qian;
Hu, Yi;
Geng, Shuang;
Ni, Ji-Xiang

Publication type:

Article

Identification of shared viral sequences in peat moss metagenomes reveals elements of a possible Sphagnum core virome.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00719-0

By:

Denison, Elizabeth R.;
Pound, Helena L.;
Gann, Eric R.;
Gilbert, Naomi E.;
Weston, David J.;
Pelletier, Dale A.;
Wilhelm, Steven W.

Publication type:

Article

台灣商用肉豬腸道菌相之研析: 16S rRNA 與Meta 定序之比較.

Published in:

Journal of the Chinese Society of Animal Science, 2024, v. 53, p. 377

By:

趙佩宇;
蕭雅芠;
黃得維;
陳羽萱;
游顗蓉;
鄭卉妤;
許晉維;
張啟聖

Publication type:

Article

subMG automates data submission for metagenomics studies.

Published in:

BioData Mining, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13040-025-00453-w

By:

Tubbesing, Tom;
Schlüter, Andreas;
Sczyrba, Alexander

Publication type:

Article

ARGContextProfiler: extracting and scoring the genomic contexts of antibiotic resistance genes using assembly graphs.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1604461

By:

Moumi, Nazifa Ahmed;
Ahmed, Shafayat;
Brown, Connor;
Pruden, Amy;
Zhang, Liqing

Publication type:

Article

Honey bulk DNA metagenomic analysis to identify honey biological composition and monitor honey bee pathogens.

Published in:

NPJ Science of Food, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41538-025-00464-1

By:

Paluoja, Priit;
Vaher, Mihkel;
Teder, Hindrek;
Krjutškov, Kaarel;
Salumets, Andres;
Raime, Kairi

Publication type:

Article

Metagenomic Analysis of Wild Apple (Malus sieversii) Trees from Natural Habitats of Kazakhstan.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1511, doi. 10.3390/plants14101511

By:

Mendybayeva, Aruzhan;
Makhambetov, Alibek;
Yanin, Kirill;
Taskuzhina, Aisha;
Khusnitdinova, Marina;
Gritsenko, Dilyara

Publication type:

Article

Impact of SARS-CoV-2 P.1 Variant Infection on the Nasopharyngeal Commensal Bacterial Microbiome of Individuals from the Brazilian Amazon.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 1088, doi. 10.3390/microorganisms13051088

By:

Mendes Silva Cruz, Amanda;
Cardoso, Jedson Ferreira;
Pinheiro, Kenny Costa;
Ferreira, Jessylene Almeida;
Barbagelata, Luana Soares;
Silva, Sandro Patroca;
Chagas Junior, Wanderley Dias;
Lobo, Patrícia Santos;
Teixeira, Dielle Monteiro;
André Junior, Walter;
Ordenes Silva, Inaiah;
Santos, Mirleide Cordeiro;
Soares Farias, Luana Silva;
Sousa, Maisa Silva;
Neto Tavares, Fernando

Publication type:

Article

The Impact of Probiotic Supplementation on the Development of the Infant Gut Microbiota: An Exploratory Follow-Up of a Randomised Controlled Trial.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 984, doi. 10.3390/microorganisms13050984

By:

Coates, Niall;
John, Daniel A.;
Jordan, Sue;
Storey, Melanie;
Thornton, Catherine A.;
Garaiova, Iveta;
Wang, Duolao;
Allen, Stephen J.;
Michael, Daryn R.;
Plummer, Susan F.;
Facey, Paul D.

Publication type:

Article

Comparative Analysis of Gut Microbiome Community Structures in Different Populations of Asian Elephants in China and Their Correlation with Diet.

Published in:

Genes, 2025, v. 16, n. 5, p. 483, doi. 10.3390/genes16050483

By:

Guo, Qiang;
Zhang, Wenping;
Xu, Chenyang;
Li, Xu;
Wang, Bin;
Xiong, Chaoyong;
Duan, Wenguang;
Luo, Tingting;
Wang, Weibin;
Zhou, Jielong

Publication type:

Article

Historical DNA Places an Apparently Extinct Gladiator Frog in the Phylogeny of the Boana pulchella Group (Anura: Hylidae).

Published in:

Herpetologica, 2025, v. 81, n. 2, p. 117, doi. 10.1655/Herpetologica-D-24-00036

By:

Nakamura, Daniel Y.M.;
Pinheiro, Paulo D.P.;
Lyra, Mariana L.;
Faivovich, Julián;
Grant, Taran

Publication type:

Article

Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae224

By:

Malik, Ashish A;
Martiny, Jennifer B H;
Ribeiro, Antonio;
Sheridan, Paul O;
Weihe, Claudia;
Brodie, Eoin L;
Allison, Steven D

Publication type:

Article

Metagenomic time series reveals a Western English Channel viral community dominated by members with strong seasonal signals.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae216

By:

Bolaños, Luis M;
Michelsen, Michelle;
Temperton, Ben

Publication type:

Article

Repeated horizontal acquisition of lagriamide-producing symbionts in Lagriinae beetles.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae211

By:

Uppal, Siddharth;
Waterworth, Samantha C;
Nick, Alina;
Vogel, Heiko;
Flórez, Laura V;
Kaltenpoth, Martin;
Kwan, Jason C

Publication type:

Article

Experimental evolution at ecological scales allows linking of viral genotypes to specific host strains.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae208

By:

Ramos-Barbero, María Dolores;
Aldeguer-Riquelme, Borja;
Viver, Tomeu;
Villamor, Judith;
Carrillo-Bautista, Miryam;
López-Pascual, Cristina;
Konstantinidis, Konstantinos T;
Martínez-García, Manuel;
Santos, Fernando;
Rossello-Mora, Ramon;
Antón, Josefa

Publication type:

Article

Genome-resolved metaproteogenomic and nanosolid characterization of an inactive vent chimney densely colonized by enigmatic DPANN archaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae207

By:

Takamiya, Hinako;
Kouduka, Mariko;
Kato, Shingo;
Suga, Hiroki;
Oura, Masaki;
Yokoyama, Tadashi;
Suzuki, Michio;
Mori, Masaru;
Kanai, Akio;
Suzuki, Yohey

Publication type:

Article

Leveraging genomic information to predict environmental preferences of bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae195

By:

Ramoneda, Josep;
Hoffert, Michael;
Stallard-Olivera, Elias;
Casamayor, Emilio O;
Fierer, Noah

Publication type:

Article

Recruitment of complete crAss-like phage genomes reveals their presence in chicken viromes, few human-specific phages, and lack of universal detection.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae192

By:

Ramos-Barbero, María Dolores;
Gómez-Gómez, Clara;
Vique, Gloria;
Sala-Comorera, Laura;
Rodríguez-Rubio, Lorena;
Muniesa, Maite

Publication type:

Article

Hidden syndinian and perkinsid infections in dinoflagellate hosts revealed by single-cell transcriptomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae188

By:

Cooney, Elizabeth C;
Leander, Brian S;
Keeling, Patrick J

Publication type:

Article

Gut microbiota carbon and sulfur metabolisms support Salmonella infections.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae187

By:

Leleiwi, Ikaia;
Kokkinias, Katherine;
Kim, Yongseok;
Baniasad, Maryam;
Shaffer, Michael;
Sabag-Daigle, Anice;
Daly, Rebecca A;
Flynn, Rory M;
Wysocki, Vicki H;
Ahmer, Brian M M;
Borton, Mikayla A;
Wrighton, Kelly C

Publication type:

Article

Temporal enrichment of comammox Nitrospira and Ca. Nitrosocosmicus in a coastal plastisphere.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae186

By:

Yang, Qian;
Zhong, Yin;
Feng, Shi-wei;
Wen, Ping;
Wang, Heli;
Wu, Junhong;
Yang, Sen;
Liang, Jie-Liang;
Li, Dan;
Yang, Qiong;
Tam, Nora F Y;
Peng, Ping'an

Publication type:

Article

Spatiotemporal dynamics of giant viruses within a deep freshwater lake reveal a distinct dark-water community.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae182

By:

Zhang, Liwen;
Meng, Lingjie;
Fang, Yue;
Ogata, Hiroyuki;
Okazaki, Yusuke

Publication type:

Article

Cyanorhodopsin-II represents a yellow-absorbing proton-pumping rhodopsin clade within cyanobacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae175

By:

Hasegawa-Takano, Masumi;
Hosaka, Toshiaki;
Kojima, Keiichi;
Nishimura, Yosuke;
Kurihara, Marie;
Nakajima, Yu;
Ishizuka-Katsura, Yoshiko;
Kimura-Someya, Tomomi;
Shirouzu, Mikako;
Sudo, Yuki;
Yoshizawa, Susumu

Publication type:

Article

Protist predation promotes antimicrobial resistance spread through antagonistic microbiome interactions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae169

By:

Liu, Chen;
Wang, Yijin;
Zhou, Zeyuan;
Wang, Shimei;
Wei, Zhong;
Ravanbakhsh, Mohammadhossein;
Shen, Qirong;
Xiong, Wu;
Kowalchuk, George A;
Jousset, Alexandre

Publication type:

Article

Evolutionary history and origins of Dsr-mediated sulfur oxidation.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae167

By:

Klier, Katherine M;
Martin, Cody;
Langwig, Marguerite V;
Anantharaman, Karthik

Publication type:

Article

Hidden genomic diversity drives niche partitioning in a cosmopolitan eukaryotic picophytoplankton.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae163

By:

Xu, Yangbing;
Leung, Shara K K;
Li, Taylor M W;
Yung, Charmaine C M

Publication type:

Article

Niche separation in bacterial communities and activities in porewater, loosely attached, and firmly attached fractions in permeable surface sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae159

By:

Moncada, Chyrene;
Arnosti, Carol;
Brüwer, Jan D;
de Beer, Dirk;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Niche differentiation within bacterial key-taxa in stratified surface waters of the Southern Pacific Gyre.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae155

By:

Oggerin, Monike;
Viver, Tomeu;
Brüwer, Jan;
Voß, Daniela;
García-Llorca, Marina;
Zielinski, Oliver;
Orellana, Luis H;
Fuchs, Bernhard M

Publication type:

Article

Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae153

By:

Ding, Su;
von Meijenfeldt, F A Bastiaan;
Bale, Nicole J;
Sinninghe Damsté, Jaap S;
Villanueva, Laura

Publication type:

Article

Anaerobic hydrocarbon biodegradation by alkylotrophic methanogens in deep oil reservoirs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae152

By:

Zhang, Cui-Jing;
Zhou, Zhuo;
Cha, Guihong;
Li, Ling;
Fu, Lin;
Liu, Lai-Yan;
Yang, Lu;
Wegener, Gunter;
Cheng, Lei;
Li, Meng

Publication type:

Article

Dynamics and activity of an ammonia-oxidizing archaea bloom in South San Francisco Bay.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae148

By:

Rasmussen, Anna N;
Francis, Christopher A

Publication type:

Article

Four years of climate warming reduced dark carbon fixation in coastal wetlands.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae138

By:

Liu, Bolin;
Qi, Lin;
Zheng, Yanling;
Zhang, Chao;
Zhou, Jie;
An, Zhirui;
Wang, Bin;
Lin, Zhuke;
Yao, Cheng;
Wang, Yixuan;
Yin, Guoyu;
Dong, Hongpo;
Li, Xiaofei;
Liang, Xia;
Han, Ping;
Liu, Min;
Zhang, Guosen;
Cui, Ying;
Hou, Lijun

Publication type:

Article

Globally distributed bacteriophage genomes reveal mechanisms of tripartite phage–bacteria–coral interactions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae132

By:

Wallace, Bailey A;
Varona, Natascha S;
Hesketh-Best, Poppy J;
Stiffler, Alexandra K;
Silveira, Cynthia B

Publication type:

Article

Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae124

By:

Nishikawa, Yohei;
Wagatsuma, Ryota;
Tsukada, Yuko;
Chia-ling, Lin;
Chijiiwa, Rieka;
Hosokawa, Masahito;
Takeyama, Haruko

Publication type:

Article