Works matching DE "METABOLIC models"

Results: 1109

Metabolic coordination and phase transitions in spatially distributed multi-cellular systems.

Published in:

Communications Physics, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42005-025-02133-x

By:

Narayanankutty, Krishnadev;
Pereiro-Morejon, José Antonio;
Ferrero-Fernández, Arián;
Onesto, Valentina;
Forciniti, Stefania;
del Mercato, Loretta L.;
Mulet, Roberto;
De Martino, Andrea;
Tourigny, David S.;
De Martino, Daniele

Publication type:

Article

Simulating metabolic pathways to enhance interpretations of metabolome genome-wide association studies.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01634-7

By:

Kodate, Shun;
Sato, Mitsuharu;
Hishinuma, Eiji;
Kojima, Kaname;
Motoike, Ikuko N.;
Abe, Hikaru;
Abe, Michiaki;
Abe, Momoka;
Abe, Naomi;
Abe, Noriko;
Abe, Tomomi;
Abe, Yuto;
Ahiko, Shizuko;
Aiki, Kayo;
Aizawa, Hiromi;
Akiyama, Yukari;
Anzawa, Hayato;
Aoki, Eri;
Aoki, Yuichi;
Arai, Hiroko

Publication type:

Article

Analysis of a Finite‐Difference Method Based on Nonlocal Approximations for a Nonlinear, Extended Three‐Compartmental Model of Ethanol Metabolism in the Human Body.

Published in:

Mathematical Methods in the Applied Sciences, 2025, v. 48, n. 9, p. 9975, doi. 10.1002/mma.10858

By:

Wacker, Benjamin

Publication type:

Article

Seed2LP: seed inference in metabolic networks for reverse ecology applications Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf140

By:

Nedjad, Chabname Ghassemi;
Bolteau, Mathieu;
Bourneuf, Lucas;
Paulevé, Loïc;
Frioux, Clémence

Publication type:

Article

Evaluación del daño pancreático mediante <sup>18</sup>[F]F-DOPA en un modelo experimental de diabetes tipo 1 en cerdos miniatura.

Published in:

Acta Pediatrica de Mexico, 2025, v. 46, p. S32

By:

Eugenia Pérez-Guillé, Beatriz;
González-Ortiz, Ailema;
Avendaño-Estrada, Arturo;
Eugenia Soriano-Rosales, Rosa;
Baruch Ríos-García, Leonardo;
Francisco González-Zamora, José;
Cedillo-Peláez, Carlos;
Ávila-Rodríguez, Miguel;
María Palma-Rosillo, Rosa;
Ángel Olarte-Casas, Miguel;
Contreras-Rivera, Claudia;
Elena Trujillo-Ortega, María

Publication type:

Article

Climate change impacts to foraging seascapes for a highly migratory top predator.

Published in:

Movement Ecology, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40462-025-00558-1

By:

Muhling, Barbara;
Snyder, Stephanie;
Hazen, Elliott L.;
Whitlock, Rebecca;
Park, Jong-Yeon;
Stock, Charles A.;
Block, Barbara A.

Publication type:

Article

Minimal cut sets in metabolic networks: from conceptual foundations to applications in metabolic engineering and biomedicine.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf188

By:

Klamt, Steffen;
Zanghellini, Jürgen;
Kamp, Axel von

Publication type:

Article

Flux balance network expansion predicts stage-specific human peri_implantation embryo metabolism.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 4, p. 1, doi. 10.1142/S021972002250010X

By:

Dadashi, Andisheh;
Martinez, Derek

Publication type:

Article

Prediction and validation of avascular tumor growth pattern in different metabolic conditions using in silico and in vitro models.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 5, p. 1, doi. 10.1142/S0219720021500244

By:

Heidari, Mahshid;
Kabiri, Mahboubeh

Publication type:

Article

Pantograph: A template-based method for genome-scale metabolic model reconstruction.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 2, p. -1, doi. 10.1142/S0219720015500067

By:

Loira, Nicolas;
Zhukova, Anna;
Sherman, David James

Publication type:

Article

Knowledge-based generalization of metabolic networks: A practical study.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 2, p. -1, doi. 10.1142/S0219720014410017

By:

Zhukova, Anna;
Sherman, David J.

Publication type:

Article

From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation.

Published in:

Photosynthesis Research, 2020, v. 145, n. 1, p. 5, doi. 10.1007/s11120-019-00681-2

By:

Herrmann, Helena A.;
Schwartz, Jean-Marc;
Johnson, Giles N.

Publication type:

Article

Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides.

Published in:

Photosynthesis Research, 2015, v. 123, n. 2, p. 167, doi. 10.1007/s11120-014-0061-1

By:

Imam, Saheed;
Fitzgerald, Colin;
Cook, Emily;
Donohue, Timothy;
Noguera, Daniel

Publication type:

Article

Systematically gap-filling the genome-scale metabolic model of CHO cells.

Published in:

Biotechnology Letters, 2021, v. 43, n. 1, p. 73, doi. 10.1007/s10529-020-03021-w

By:

Fouladiha, Hamideh;
Marashi, Sayed-Amir;
Li, Shangzhong;
Li, Zerong;
Masson, Helen O.;
Vaziri, Behrouz;
Lewis, Nathan E.

Publication type:

Article

A thermodynamic-based approach to model the entry into metabolic depression by mammals and birds.

Published in:

Journal of Comparative Physiology B: Biochemical, Systemic & Environmental Physiology, 2022, v. 192, n. 5, p. 593, doi. 10.1007/s00360-022-01442-9

By:

Nogueira de Sá, P. G.;
Chaui-Berlinck, José Guilherme

Publication type:

Article

Levels of metabolic markers in drug-naive prediabetic and type 2 diabetic patients.

Published in:

Acta Diabetologica, 2017, v. 54, n. 2, p. 163, doi. 10.1007/s00592-016-0926-1

By:

Akour, Amal;
Kasabri, Violet;
Boulatova, Nailya;
Bustanji, Yasser;
Naffa, Randa;
Hyasat, Dana;
Khawaja, Nahla;
Bustanji, Haidar;
Zayed, Ayman;
Momani, Munther

Publication type:

Article

Comparison of Metabolic Changes after 6 Months of High-Carbohydrate Diet or High-Fat Diet with Low Dose Streptozotocin Injection in Rats.

Published in:

Bulletin of Experimental Biology & Medicine, 2024, v. 177, n. 3, p. 395, doi. 10.1007/s10517-024-06196-8

By:

Ivanov, E. V.;
Akhmetshina, M. R.;
Gizatulina, A. R.;
Erdiakov, A. K.;
Meinarovich, P. A.;
Gavrilova, S. A.

Publication type:

Article

Regulation of Vascular Smooth Muscle Contractions in the Model of Metabolic Syndrome.

Published in:

Bulletin of Experimental Biology & Medicine, 2020, v. 170, n. 2, p. 196, doi. 10.1007/s10517-020-05031-0

By:

Birulina, Yu. G.;
Ivanov, V. V.;
Buyko, E. E.;
Efremkina, E. P.;
Smagliy, L. V.;
Kovalev, I. V.;
Nosarev, A. V.;
Gusakova, S. V.

Publication type:

Article

Investigation on the metabolic characteristics of isobavachin in Psoralea corylifolia L. (Bu‐gu‐zhi) and its potential inhibition against human cytochrome P450s and UDP‐glucuronosyltransferases.

Published in:

Journal of Pharmacy & Pharmacology, 2020, v. 72, n. 12, p. 1865, doi. 10.1111/jphp.13337

By:

Xing, Han;
Yang, Jing;
Ren, Kaidi;
Qin, Zifei;
Wang, Peile;
Zhang, Xiaojian;
Yao, Zhihong;
Gonzalez, Frank J.;
Yao, Xinsheng

Publication type:

Article

Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate.

Published in:

Biotechnology for Biofuels & Bioproducts, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13068-021-02099-2

By:

Upton, Daniel J.;
Kaushal, Mehak;
Whitehead, Caragh;
Faas, Laura;
Gomez, Leonardo D.;
McQueen-Mason, Simon J.;
Srivastava, Shireesh;
Wood, A. Jamie

Publication type:

Article

Structural constraints limit the regime of optimal flux in autocatalytic reaction networks.

Published in:

Communications Physics, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42005-024-01704-8

By:

Despons, Armand;
De Decker, Yannick;
Lacoste, David

Publication type:

Article

Glucocorticoid Receptor Antagonism Improves Glucose Metabolism in a Mouse Model of Polycystic Ovary Syndrome.

Published in:

Journal of the Endocrine Society, 2024, v. 8, n. 1, p. 1, doi. 10.1210/jendso/bvad162

By:

Li, Sheng;
Ying, Zhixiong;
Gentenaar, Max;
Rensen, Patrick C N;
Kooijman, Sander;
Visser, Jenny A;
Meijer, Onno C;
Kroon, Jan

Publication type:

Article

Integrated Sustainability Score Implementation as an Objective Function in Sustainable Metabolic Engineering.

Published in:

Fermentation (Basel), 2023, v. 9, n. 6, p. 548, doi. 10.3390/fermentation9060548

By:

Muiznieks, Reinis;
Dace, Elina;
Stalidzans, Egils

Publication type:

Article

Modeling and Simulation of Batch Sugarcane Alcoholic Fermentation Using the Metabolic Model.

Published in:

Fermentation (Basel), 2022, v. 8, n. 6, p. 82, doi. 10.3390/fermentation8020082

By:

Acorsi, Renam Luis;
De Giovanni, Matheus Yuri Gritzenco;
Olivo, José Eduardo;
Andrade, Cid Marcos Gonçalves

Publication type:

Article

Modeling and Simulation of Batch Sugarcane Alcoholic Fermentation Using the Metabolic Model.

Published in:

Fermentation (Basel), 2022, v. 8, n. 2, p. 82, doi. 10.3390/fermentation8020082

By:

Acorsi, Renam Luis;
De Giovanni, Matheus Yuri Gritzenco;
Olivo, José Eduardo;
Andrade, Cid Marcos Gonçalves

Publication type:

Article

Insights on the Advancements of In Silico Metabolic Studies of Succinic Acid Producing Microorganisms: A Review with Emphasis on Actinobacillus succinogenes.

Published in:

Fermentation (Basel), 2021, v. 7, n. 4, p. 1, doi. 10.3390/fermentation7040220

By:

Dessie, Wubliker;
Zongcheng Wang;
Xiaofang Luo;
Meifeng Wang;
Zuodong Qin

Publication type:

Article

An energetics perspective on geroscience: mitochondrial protonmotive force and aging.

Published in:

GeroScience, 2021, v. 43, n. 4, p. 1591, doi. 10.1007/s11357-021-00365-7

By:

Berry, Brandon J.;
Kaeberlein, Matt

Publication type:

Article

Uricemia in juvenile pigs model: effect of nephrectomy and potassium oxonate.

Published in:

Journal of Animal & Feed Sciences, 2019, v. 28, n. 3, p. 254, doi. 10.22358/jafs/110436/2019

By:

Mosiichuk, N.;
Grujic, D.;
Woliński, J.;
Podpryatov, S. E.;
Podpriatov, S. S.;
Szczurek, P.;
Yatsenko, T.;
Shmihel, H.;
Drahanchuk, O.;
Pierzynowski, S. G.;
Pierzynowska, K. Goncharova

Publication type:

Article

Developing single‐substrate steady‐state model for biohydrogen production in continuous anaerobic activated sludge–rotating biological contactor system: Novel insights on the process.

Published in:

International Journal of Energy Research, 2022, v. 46, n. 2, p. 2041, doi. 10.1002/er.7265

By:

Mohammadi, Mahin;
Mohammadi, Parviz

Publication type:

Article

VITAMIN D EFFECTS ON LIPID PROFILE AND URIC ACID LEVELS IN THE EXPERIMENTAL MODEL OF METABOLIC DISORDERS IN FRUCTOSE FED WISTAR RATS.

Published in:

Farmacia, 2019, v. 67, n. 6, p. 1071, doi. 10.31925/farmacia.2019.6.20

By:

PASHOVA-STOYANOVA, LILIA;
TOLEKOVA, ANNA;
GANEVA, MARIA;
TSOKEVA, ZHIVKA;
HADZHIBOZHEVA, PETYA;
GEORGIEV, TSVETELIN;
NANCHEVA, KRASIMIRA

Publication type:

Article

合成大麻素ADB-BUTINACA在人体尿液及体内外代谢模型中的代谢比较.

Published in:

Journal of Chinese Mass Spectrometry Society, 2023, v. 44, n. 3, p. 424, doi. 10.7538/zpxb.2022.0087

By:

古锟山;
王继芬;
张瑛;
覃仕扬;
张文芳;
吴昊;
占志胜

Publication type:

Article

4′-氯地西泮和二氯西泮的大鼠肝微粒体体外代谢研究.

Published in:

Journal of Chinese Mass Spectrometry Society, 2022, v. 43, n. 1, p. 34, doi. 10.7538/zpxb.2020.0134

By:

李乐;
赵君博;
严慧;
邓虹霄;
范先煜;
刘万卉;
向平

Publication type:

Article

Chemical Characterization, Antilipidemic Effect and Anti-Obesity Activity of Ludwigia octovalvis in a Murine Model of Metabolic Syndrome.

Published in:

Plants (2223-7747), 2023, v. 12, n. 13, p. 2578, doi. 10.3390/plants12132578

By:

Morales-Ferra, Dulce Lourdes;
Zavala-Sánchez, Miguel Ángel;
Jiménez-Ferrer, Enrique;
Trejo-Moreno, Celeste;
González-Cortazar, Manasés;
Gamboa-Gómez, Claudia I.;
Guerrero-Romero, Fernando;
Zamilpa, Alejandro

Publication type:

Article

Effect of Tecoma stans (L.) Juss. ex Kunth in a Murine Model of Metabolic Syndrome.

Published in:

Plants (2223-7747), 2022, v. 11, n. 14, p. N.PAG, doi. 10.3390/plants11141794

By:

Morales-Ferra, Dulce Lourdes;
Zavala-Sánchez, Miguel Ángel;
Jiménez-Ferrer, Enrique;
González-Cortazar, Manasés;
Zamilpa, Alejandro

Publication type:

Article

A Systemic View of Carbohydrate Metabolism in Rice to Facilitate Productivity.

Published in:

Plants (2223-7747), 2021, v. 10, n. 8, p. 1690, doi. 10.3390/plants10081690

By:

Hong, Woo-Jong;
Jiang, Xu;
Choi, Seok-Hyun;
Kim, Yu-Jin;
Kim, Sun-Tae;
Jeon, Jong-Seong;
Jung, Ki-Hong

Publication type:

Article

Oxidative Imbalance and Kidney Damage in Cafeteria Diet-Induced Rat Model of Metabolic Syndrome: Effect of Bergamot Polyphenolic Fraction.

Published in:

Pharmacy, 2019, v. 7, n. 1, p. 66, doi. 10.3390/antiox8030066

By:

La Russa, Daniele;
Giordano, Francesca;
Marrone, Alessandro;
Parafati, Maddalena;
Janda, Elzbieta;
Pellegrino, Daniela

Publication type:

Article

Metabolic flux analysis of hydrogen production network by Ethanoligenens harbinense B49: effect of product inhibition.

Published in:

Environmental Technology, 2024, v. 45, n. 22, p. 4645, doi. 10.1080/09593330.2023.2283051

By:

Tang, Jing;
Li, Weitan;
Lin, Zhihong;
Yang, Jiahao;
Meng, Ziqi

Publication type:

Article

Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.87406

By:

Vezina, Ben;
Watts, Stephen C.;
Hawkey, Jane;
Cooper, Helena B.;
Judd, Louise M.;
Jenney, Adam W. J.;
Monk, Jonathan M.;
Holt, Kathryn E.;
Wyres, Kelly L.

Publication type:

Article

Exploiting stoichiometric redundancies for computational efficiency and network reduction.

Published in:

In Silico Biology, 2012, v. 12, n. 1/2, p. 55, doi. 10.3233/ISB-140464

By:

Ingalls, Brian P.;
Bembenek, Eric

Publication type:

Article

A novel recurrence-associated metabolic prognostic model for risk stratification and therapeutic response prediction in patients with stage I lung adenocarcinoma.

Published in:

Cancer Biology & Medicine, 2021, v. 18, n. 3, p. 734, doi. 10.20892/j.issn.2095-3941.2020.0397

By:

Chengming Liu;
Sihui Wang;
Sufei Zheng;
Xinfeng Wang;
Jianbin Huang;
Yuanyuan Lei;
Shuangshuang Mao;
Xiaoli Feng;
Nan Sun;
Jie He

Publication type:

Article

Transcriptome-based biomarker prediction for Parkinson's disease using genome-scale metabolic modeling.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-023-51034-y

By:

Abdik, Ecehan;
Çakır, Tunahan

Publication type:

Article

Essential oil components of turmeric inhibit hepatic lipidification and liver fibrosis in a diet-induced NASH model rats.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-47097-6

By:

Watanabe, Yukari;
Watanabe, Hitoshi;
Kogure, Sarasa;
Tanioka, Yuri;
Yamauchi, Jun;
Furusho, Tadasu

Publication type:

Article

Metabolic profiling to evaluate the impact of amantadine and rimantadine on the secondary metabolism of a model organism.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43540-w

By:

Kostina-Bednarz, Marianna;
Płonka, Joanna;
Barchanska, Hanna

Publication type:

Article

Unveiling metabolic pathways involved in the extreme desiccation tolerance of an Atacama cyanobacterium.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-41879-8

By:

Moore, Rachel A.;
Azua-Bustos, Armando;
González-Silva, Carlos;
Carr, Christopher E.

Publication type:

Article

Metabolic profiling to evaluate the impact of amantadine and rimantadine on the secondary metabolism of a model organism.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43540-w

By:

Kostina-Bednarz, Marianna;
Płonka, Joanna;
Barchanska, Hanna

Publication type:

Article

SL-scan identifies synthetic lethal interactions in cancer using metabolic networks.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-42992-4

By:

Zangene, Ehsan;
Marashi, Sayed-Amir;
Montazeri, Hesam

Publication type:

Article

Pichia pastoris growth—coupled heme biosynthesis analysis using metabolic modelling.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-42865-w

By:

Pentjuss, Agris;
Bolmanis, Emils;
Suleiko, Anastasija;
Didrihsone, Elina;
Suleiko, Arturs;
Dubencovs, Konstantins;
Liepins, Janis;
Kazaks, Andris;
Vanags, Juris

Publication type:

Article

Unveiling metabolic pathways involved in the extreme desiccation tolerance of an Atacama cyanobacterium.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-41879-8

By:

Moore, Rachel A.;
Azua-Bustos, Armando;
González-Silva, Carlos;
Carr, Christopher E.

Publication type:

Article

Development and applications of metabolic models in plant multiomics research.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1361183

By:

Yonggang Gao;
Cheng Zhao

Publication type:

Article

Effects of potentilla discolor bunge extracts on oxidative stress and glycolipid metabolism in animal models of diabetes: a systematic review and meta-analysis.

Published in:

Frontiers in Pharmacology, 2023, p. 1, doi. 10.3389/fphar.2023.1218757

By:

Yunjiao Yang;
Wen Deng;
Yue Wu;
Changyan Zi;
Qiu Chen

Publication type:

Article