Works matching DE "LINUX operating systems"

Results: 595

Linux as a Tool: Remaster KNOPPIX Live CD to Promote Your Institution.

Published in:

ATEA Journal, 2007, v. 34, n. 2, p. 18

By:

Dotson, Michael;
Coffman, Michael

Publication type:

Article

A Server-side Pre-linking Mechanism for Updating Embedded Operating System Dynamically.

Published in:

Journal of Information Science & Engineering, 2010, v. 26, n. 1, p. 39

By:

BOR-YEH SHEN;
MEI-LING CHIANG

Publication type:

Article

A Flash-Aware Cluster Allocation Scheme for Legacy File Systems.

Published in:

Journal of Information Science & Engineering, 2009, v. 25, n. 4, p. 1191

By:

SUNG-KWAN KIM;
HUNKI KWON;
DONG-HEE LEE;
SAM H. NOH;
SANG LYUL MIN

Publication type:

Article

Automated indexing: feeding the AutoComplete monster.

Published in:

Indexer, 2010, v. 28, n. 2, p. 74, doi. 10.3828/indexer.2010.19

By:

Jermey, Jon

Publication type:

Article

Linux and the indexer -- a note.

Published in:

Indexer, 2009, v. 27, n. 3, p. 135, doi. 10.3828/indexer.2009.42

By:

Jermey, Jonathan

Publication type:

Article

BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies.

Published in:

Microbial Ecology, 2016, v. 72, n. 2, p. 443, doi. 10.1007/s00248-016-0785-x

By:

Pylro, Victor;
Morais, Daniel;
Oliveira, Francislon;
Santos, Fausto;
Lemos, Leandro;
Oliveira, Guilherme;
Roesch, Luiz

Publication type:

Article

Revealing and repairing configuration inconsistencies in large-scale system software.

Published in:

International Journal on Software Tools for Technology Transfer, 2012, v. 14, n. 5, p. 531, doi. 10.1007/s10009-012-0225-2

By:

Tartler, Reinhard;
Sincero, Julio;
Dietrich, Christian;
Schröder-Preikschat, Wolfgang;
Lohmann, Daniel

Publication type:

Article

Scenario-based testing from UML/OCL behavioral models.

Published in:

International Journal on Software Tools for Technology Transfer, 2011, v. 13, n. 5, p. 431, doi. 10.1007/s10009-011-0189-7

By:

Castillos, Kalou;
Dadeau, Frédéric;
Julliand, Jacques

Publication type:

Article

Estimation of speciation times under the multispecies coalescent.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5182, doi. 10.1093/bioinformatics/btac679

By:

Peng, Jing;
Swofford, David L;
Kubatko, Laura

Publication type:

Article

SplicingFactory—splicing diversity analysis for transcriptome data.

Published in:

Bioinformatics, 2022, v. 38, n. 2, p. 384, doi. 10.1093/bioinformatics/btab648

By:

Dankó, Benedek;
Szikora, Péter;
Pór, Tamás;
Szeifert, Alexa;
Sebestyén, Endre

Publication type:

Article

Machine-OlF-Action: a unified framework for developing and interpreting machine-learning models for chemosensory research.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1769, doi. 10.1093/bioinformatics/btaa1104

By:

Gupta, Anku;
Choudhary, Mohit;
Mohanty, Sanjay Kumar;
Mittal, Aayushi;
Gupta, Krishan;
Arya, Aditya;
Kumar, Suvendu;
Katyayan, Nikhil;
Dixit, Nilesh Kumar;
Kalra, Siddhant;
Goel, Manshi;
Sahni, Megha;
Singhal, Vrinda;
Mishra, Tripti;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

CRAFT: Compact genome Representation toward large-scale Alignment-Free daTabase.

Published in:

Bioinformatics, 2021, v. 37, n. 2, p. 155, doi. 10.1093/bioinformatics/btaa699

By:

Lu, Yang Young;
Bai, Jiaxing;
Wang, Yiwen;
Wang, Ying;
Sun, Fengzhu

Publication type:

Article

MIAMI––a tool for non-targeted detection of metabolic flux changes for mode of action identification.

Published in:

Bioinformatics, 2020, v. 36, n. 12, p. 3925, doi. 10.1093/bioinformatics/btaa251

By:

Dudek, Christian-Alexander;
Reuse, Carsten;
Fuchs, Regine;
Hendriks, Janneke;
Starck, Veronique;
Hiller, Karsten

Publication type:

Article

PyChimera: use UCSF Chimera modules in any Python 2.7 project.

Published in:

Bioinformatics, 2018, v. 34, n. 10, p. 1784, doi. 10.1093/bioinformatics/bty021

By:

Pedregal, Jaime Rodríguez-Guerra;
Maréchal, Jean-Didier

Publication type:

Article

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1606, doi. 10.1093/bioinformatics/btx799

By:

Tahsin, Tasnia;
Weissenbacher, Davy;
O'Connor, Karen;
Magge, Arjun;
Scotch, Matthew;
Gonzalez-Hernandez, Graciela

Publication type:

Article

Bioalcidae, samjs and vcffilterjs: object-oriented formatters and filters for bioinformatics files.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1224, doi. 10.1093/bioinformatics/btx734

By:

Lindenbaum, Pierre;
Redon, Richard

Publication type:

Article

Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses.

Published in:

Bioinformatics, 2018, v. 34, n. 3, p. 514, doi. 10.1093/bioinformatics/btx554

By:

Menegidio, Fabiano B;
Jabes, Daniela L;
Oliveira, Regina Costa de;
Nunes, Luiz R

Publication type:

Article

Phyx: phylogenetic tools for unix.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1886, doi. 10.1093/bioinformatics/btx063

By:

Brown, Joseph W.;
Walker, Joseph F.;
Smith, Stephen A.

Publication type:

Article

FARAO: the flexible all-round annotation organizer.

Published in:

Bioinformatics, 2016, v. 32, n. 23, p. 3664, doi. 10.1093/bioinformatics/btw499

By:

Hammarén, Rickard;
Pal, Chandan;
Bengtsson-Palme, Johan

Publication type:

Article

AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3118, doi. 10.1093/bioinformatics/btu486

By:

Nicolazzi, Ezequiel L.;
Iamartino, Daniela;
Williams, John L.

Publication type:

Article

tqDist: a library for computing the quartet and triplet distances between binary or general trees.

Published in:

Bioinformatics, 2014, v. 30, n. 14, p. 2079, doi. 10.1093/bioinformatics/btu157

By:

Sand, Andreas;
Holt, Morten K.;
Johansen, Jens;
Brodal, Gerth Stølting;
Mailund, Thomas;
Pedersen, Christian N. S.

Publication type:

Article

Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics.

Published in:

Bioinformatics, 2014, v. 30, n. 10, p. 1488, doi. 10.1093/bioinformatics/btu055

By:

Monacell, James T.;
Carbone, Ignazio

Publication type:

Article

NGSANE: a lightweight production informatics framework for high-throughput data analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 10, p. 1471, doi. 10.1093/bioinformatics/btu036

By:

Buske, Fabian A.;
French, Hugh J.;
Smith, Martin A.;
Clark, Susan J.;
Bauer, Denis C.

Publication type:

Article

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1331

By:

Starruß, Jörn;
de Back, Walter;
Brusch, Lutz;
Deutsch, Andreas

Publication type:

Article

forqs: forward-in-time simulation of recombination, quantitative traits and selection.

Published in:

Bioinformatics, 2014, v. 30, n. 4, p. 576, doi. 10.1093/bioinformatics/btt712

By:

Kessner, Darren;
Novembre, John

Publication type:

Article

myChEMBL: a virtual machine implementation of open data and cheminformatics tools.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 298, doi. 10.1093/bioinformatics/btt666

By:

Ochoa, Rodrigo;
Davies, Mark;
Papadatos, George;
Atkinson, Francis;
Overington, John P.

Publication type:

Article

RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3102, doi. 10.1093/bioinformatics/btt536

By:

Schnattinger, Thomas;
Schöning, Uwe;
Marchfelder, Anita;
Kestler, Hans A.

Publication type:

Article

Consed: a graphical editor for next-generation sequencing.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2936, doi. 10.1093/bioinformatics/btt515

By:

Gordon, David;
Green, Phil

Publication type:

Article

RNA secondary structure diagrams for very large molecules: RNAfdl.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2941, doi. 10.1093/bioinformatics/btt496

By:

Hecker, Nikolai;
Wiegels, Tim;
Torda, Andrew E.

Publication type:

Article

PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2049, doi. 10.1093/bioinformatics/btt348

By:

Woo, Sangsoon;
Zhang, Xuekui;
Sauteraud, Renan;
Robert, François;
Gottardo, Raphael

Publication type:

Article

Automated design of paralogue ratio test assays for the accurate and rapid typing of copy number variation.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1997, doi. 10.1093/bioinformatics/btt330

By:

Veal, Colin D.;
Xu, Hang;
Reekie, Katherine;
Free, Robert;
Hardwick, Robert J.;
McVey, David;
Brookes, Anthony J.;
Hollox, Edward J.;
Talbot, Christopher J.

Publication type:

Article

Mendel: the Swiss army knife of genetic analysis programs.

Published in:

Bioinformatics, 2013, v. 29, n. 12, p. 1568, doi. 10.1093/bioinformatics/btt187

By:

Lange, Kenneth;
Papp, Jeanette C.;
Sinsheimer, Janet S.;
Sripracha, Ram;
Zhou, Hua;
Sobel, Eric M.

Publication type:

Article

Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1268, doi. 10.1093/bioinformatics/btt149

By:

Pagni, Marco;
Niculita-Hirzel, Hélène;
Pellissier, Loïc;
Dubuis, Anne;
Xenarios, Ioannis;
Guisan, Antoine;
Sanders, Ian R.;
Goudet, Jérôme;
Guex, Nicolas

Publication type:

Article

pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1215, doi. 10.1093/bioinformatics/btt129

By:

Schuepbach, Thierry;
Pagni, Marco;
Bridge, Alan;
Bougueleret, Lydie;
Xenarios, Ioannis;
Cerutti, Lorenzo

Publication type:

Article

NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 4, p. 494, doi. 10.1093/bioinformatics/bts731

By:

Breese, Marcus R.;
Liu, Yunlong

Publication type:

Article

Characterization of disordered proteins with ENSEMBLE.

Published in:

Bioinformatics, 2013, v. 29, n. 3, p. 398, doi. 10.1093/bioinformatics/bts701

By:

Krzeminski, Mickaël;
Marsh, Joseph A.;
Neale, Chris;
Choy, Wing-Yiu;
Forman-Kay, Julie D.

Publication type:

Article

Updating annotations with the distributed annotation system and the automated sequence annotation pipeline.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2858, doi. 10.1093/bioinformatics/bts530

By:

Speier, William;
Ochs, Michael F.

Publication type:

Article

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1542, doi. 10.1093/bioinformatics/bts165

By:

Jourdren, Laurent;
Bernard, Maria;
Dillies, Marie-Agnès;
Le Crom, Stéphane

Publication type:

Article

SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer.

Published in:

Bioinformatics, 2012, v. 28, n. 9, p. 1276, doi. 10.1093/bioinformatics/bts122

By:

Popendorf, Kris;
Sakakibara, Yasubumi

Publication type:

Article

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 889, doi. 10.1093/bioinformatics/btr694

By:

Chandan, Kumar;
van Iersel, Martijn P.;
Aladjem, Mirit I.;
Kohn, Kurt W.;
Luna, Augustin

Publication type:

Article

The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology.

Published in:

Bioinformatics, 2011, v. 27, n. 23, p. 3323, doi. 10.1093/bioinformatics/btr571

By:

Blakes, Jonathan;
Twycross, Jamie;
Romero−Campero, Francisco Jose;
Krasnogor, Natalio

Publication type:

Article

BamTools: a C++ API and toolkit for analyzing and managing BAM files.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1691, doi. 10.1093/bioinformatics/btr174

By:

Barnett, Derek W.;
Garrison, Erik K.;
Quinlan, Aaron R.;
Strömberg, Michael P.;
Marth, Gabor T.

Publication type:

Article

RuleBender: a visual interface for rule-based modeling.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1721, doi. 10.1093/bioinformatics/btr197

By:

Xu, Wen;
Smith, Adam M.;
Faeder, James R.;
Marai, G. Elisabeta

Publication type:

Article

TEQC: an R package for quality control in target capture experiments.

Published in:

Bioinformatics, 2011, v. 27, n. 9, p. 1316, doi. 10.1093/bioinformatics/btr122

By:

Hummel, Manuela;
Bonnin, Sarah;
Lowy, Ernesto;
Roma, Guglielmo

Publication type:

Article

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1179, doi. 10.1093/bioinformatics/btr095

By:

Kamentsky, Lee;
Jones, Thouis R.;
Fraser, Adam;
Bray, Mark-Anthony;
Logan, David J.;
Madden, Katherine L.;
Ljosa, Vebjorn;
Rueden, Curtis;
Eliceiri, Kevin W.;
Carpenter, Anne E.

Publication type:

Article

SpaCEM3: a software for biological module detection when data is incomplete, high dimensional and dependent.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 881, doi. 10.1093/bioinformatics/btr034

By:

Vignes, Matthieu;
Blanchet, Juliette;
Leroux, Damien;
Forbes, Florence

Publication type:

Article

BigWig and BigBed: enabling browsing of large distributed datasets.

Published in:

Bioinformatics, 2010, v. 26, n. 17, p. 2204, doi. 10.1093/bioinformatics/btq351

By:

Kent, W. J.;
Zweig, A. S.;
Barber, G.;
Hinrichs, A. S.;
Karolchik, D.

Publication type:

Article

Artifacts, Actors, and Interactions in the Cross-Project Coordination Practices of Open-Source Communities.

Published in:

Journal of the Association for Information Systems, 2010, v. 11, n. 12, p. 838

By:

Chua, Cecil Eng Huang;
Yeow, Adrian Yong Kwang

Publication type:

Article

Hierarchy, Laboratory and Collective: Unveiling Linux as Innovation, Machination and Constitution.

Published in:

Journal of the Association for Information Systems, 2010, v. 11, n. 12, p. 809

By:

Cornford, Tony;
Shaikh, Maha;
Ciborra, Claudio

Publication type:

Article

Automated Discovery of Container Executables.

Published in:

Journal of Open Research Software, 2023, v. 11, n. 1, p. 1, doi. 10.5334/jors.451

By:

Sochat, Vanessa;
Muffato, Matthieu;
Stott, Audrey;
De La Pierre, Marco;
Stuart, Georgia

Publication type:

Article