Works about INTRONS

Results: 3217

Linking O-GlcNAc and intron retention.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.107226

By:

HANOVER, JOHN A.

Publication type:

Article

TP53 minigene analysis of 161 sequence changes provides evidence for role of spatial constraint and regulatory elements on variant-induced splicing impact.

Published in:

NPJ Genomic Medicine, 2025, v. 10, n. 1, p. 1, doi. 10.1038/s41525-025-00498-0

By:

Canson, Daffodil M.;
Llinares-Burguet, Inés;
Fortuno, Cristina;
Sanoguera-Miralles, Lara;
Bueno-Martínez, Elena;
de la Hoya, Miguel;
Spurdle, Amanda B.;
Velasco-Sampedro, Eladio A.

Publication type:

Article

Introns increase gene expression in Caenorhabditis elegans by a mechanism that must be at least partly different than in plants.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-99739-6

By:

Rose, Alan B.;
Baer, Aaron;
Shaker, Isaac;
Monroe, J. Grey;
Korf, Ian;
Rose, Lesilee S.

Publication type:

Article

An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf076

By:

Chan, Jennie;
Truglio, Mauro;
Schardl, Christopher L;
Cox, Murray P;
Young, Carolyn A;
Ganley, Austen R D

Publication type:

Article

TaqMan RT-PCR assay coupled with capillary electrophoresis for quantification and identification of bcr-abl transcript type.

Published in:

2004

By:

Luthra, Rajyalakshmi;
Sanchez-Vega, Beatriz;
Medeiros, L. Jeffrey

Publication type:

journal article

DEAD-Box Helicase Proteins Disrupt RNA Tertiary Structure Through Helix Capture.

Published in:

PLoS Biology, 2014, v. 12, n. 10, p. 1, doi. 10.1371/journal.pbio.1001981

By:

Pan, Cynthia;
Potratz, Jeffrey P.;
Cannon, Brian;
Simpson, Zachary B.;
Ziehr, Jessica L.;
Tijerina, Pilar;
Russell, Rick

Publication type:

Article

The In Vivo Kinetics of RNA Polymerase II Elongation during Co-Transcriptional Splicing.

Published in:

PLoS Biology, 2011, v. 9, n. 1, p. 1, doi. 10.1371/journal.pbio.1000573

By:

Brody, Yehuda;
Neufeld, Noa;
Bieberstein, Nicole;
Causse, Sebastien Z.;
Böhnlein, Eva-Maria;
Neugebauer, Karla M.;
Darzacq, Xavier;
Shav-Tal, Yaron

Publication type:

Article

Multiple Molecular Mechanisms Cause Reproductive Isolation between Three Yeast Species.

Published in:

PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000432

By:

Jui-Yu Chou;
Yin-Shan Hung;
Kuan-Huei Lin;
Hsin-Yi Lee;
Jun-Yi Leu

Publication type:

Article

For Group II Introns, More Heat Means More Mobility.

Published in:

PLoS Biology, 2010, v. 8, n. 6, p. 1, doi. 10.1371/journal.pbio.1000392

By:

Robinson, Richard

Publication type:

Article

Mechanisms Used for Genomic Proliferation by Thermophilic Group II Introns.

Published in:

PLoS Biology, 2010, v. 8, n. 6, p. 1, doi. 10.1371/journal.pbio.1000391

By:

Mohr, Georg;
Ghanem, Eman;
Lambowitz, Alan M.

Publication type:

Article

Degradation of YRA1 Pre-mRNA in the Cytoplasm Requires Translational Repression, Multiple Modular Intronic Elements, Edc3p, and Mex67p.

Published in:

PLoS Biology, 2010, v. 8, n. 5, p. 1, doi. 10.1371/journal.pbio.1000360

By:

Shuyun Dong;
Jacobson, Allan;
Feng He

Publication type:

Article

Degradation of YRA1 Pre-mRNA in the Cytoplasm Requires Translational Repression, Multiple Modular Intronic Elements, Edc3p, and Mex67p.

Published in:

PLoS Biology, 2010, v. 8, n. 4, p. 1, doi. 10.1371/journal.pbio.1000360

By:

Shuyun Dong;
Allan Jacobson;
Feng He

Publication type:

Article

ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth.

Published in:

PLoS Biology, 2009, v. 7, n. 12, p. 1, doi. 10.1371/journal.pbio.1000256

By:

Markljung, Ellen;
Lin Jiang;
Jaffe, Jacob D.;
Mikkelsen, Tarjei S.;
Wallerman, Ola;
Larhammar, Martin;
Xiaolan Zhang;
Li Wang;
Saenz-Vash, Veronica;
Gnirke, Andreas;
Lindroth, Anders M.;
Barrés, Romain;
Jie Yan;
Strömberg, Sara;
De, Sachinandan;
Pontén, Fredrik;
Lander, Eric S.;
Carr, Steven A.;
Zierath, Juleen R.;
Kullander, Klas

Publication type:

Article

Where Do Introns Come From.

Published in:

2008

By:

Catania, Francesco;
Lynch, Michael

Publication type:

Essay

Secretory Protein mRNA Finds Another Way Out.

Published in:

PLoS Biology, 2007, v. 5, n. 12, p. e330, doi. 10.1371/journal.pbio.0050330

By:

O'Day, Kira E.

Publication type:

Article

Splicing and the Evolution of Proteins in Mammals.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 343, doi. 10.1371/journal.pbio.0050014

By:

Parmley, Joanna L.;
Urrutia, Araxi O.;
Potrzebowski, Lukasz;
Kaessmann, Henrik;
Hurst, Laurence D.

Publication type:

Article

Sing the Genome Electric: Excited Cells Adjust Their Splicing.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 141, doi. 10.1371/journal.pbio.0050055

By:

Ares Jr., Manuel

Publication type:

Article

Looping Out Introns to Help Splicing.

Published in:

PLoS Biology, 2006, v. 4, n. 2, p. e41, doi. 10.1371/journal.pbio.0040041

By:

Robinson, Richard

Publication type:

Article

Intronic Binding Sites for hnRNP A/B and hnRNP F/H Proteins Stimulate Pre-mRNA Splicing.

Published in:

PLoS Biology, 2006, v. 4, n. 2, p. e21, doi. 10.1371/journal.pbio.0040021

By:

Martinez-Contreras, Rebeca;
Fisette, Jean-François;
Nasim, Faiz-ul Hassan;
Madden, Richard;
Cordeau, Mélanie;
Chabot, Benoit

Publication type:

Article

Functional Identification of Catalytic Metal Ion Binding Sites within RNA.

Published in:

PLoS Biology, 2005, v. 3, n. 9, p. 1536, doi. 10.1371/journal.pbio.0030277

By:

Hougland, James L.;
Kravchuk, Alexander V.;
Herschlag, Daniel;
Piccirilli, Joseph A.

Publication type:

Article

Functional Identification of Catalytic Metal Ion Binding Sites within RNA.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030277

By:

Hougland, James L;
Kravchuk, Alexander V;
Herschlag, Daniel;
Piccirilli, Joseph A

Publication type:

Article

The maize alternative oxidase 1a (Aox1a) gene is regulated by signals related to oxidative stress.

Published in:

Redox Report, 2005, v. 10, n. 2, p. 71, doi. 10.1179/135100005X21688

By:

Polidoros, Alexios N.;
Mylona, Photini V.;
Pasentsis, Konstantinos;
Scandalios, John G.;
Tsaftaris, Athanasios S.

Publication type:

Article

Author Index Volume 19 (2021).

Published in:: Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021990018
Publication type:: Article

Evidence for exon shuffling is sensitive to model choice.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021400138

By:

Cui, Xiaoyue;
Stolzer, Maureen;
Durand, Dannie

Publication type:

Article

SpliceViNCI: Visualizing the splicing of non-canonical introns through recurrent neural networks.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 4, p. 1, doi. 10.1142/S0219720021500141

By:

Dutta, Aparajita;
Singh, Kusum Kumari;
Anand, Ashish

Publication type:

Article

Representation of DNA sequences in genetic codon context with applications in exon and intron prediction.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 2, p. -1, doi. 10.1142/S0219720015500043

By:

Yin, Changchuan

Publication type:

Article

FUNCTIONAL UNDERSTANDING OF THE DIVERSE EXON-INTRON STRUCTURES OF HUMAN GPCR GENES.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 1, p. -1, doi. 10.1142/S0219720013500194

By:

HAMMOND, DOROTHY A.;
OLMAN, VICTOR;
XU, YING

Publication type:

Article

SIRIUS PSB:: A GENERIC SYSTEM FOR ANALYSIS OF BIOLOGICAL SEQUENCES.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 6, p. 973, doi. 10.1142/S0219720009004436

By:

KOH, CHUAN HOCK;
LIN, SHARENE;
JEDD, GREGORY;
WONG, LIMSOON

Publication type:

Article

FINDING ALTERNATIVE SPLICING PATTERNS WITH STRONG SUPPORT FROM EXPRESSED SEQUENCES ON INDIVIDUAL EXONS/INTRONS.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 5, p. 1021, doi. 10.1142/S0219720008003825

By:

WONG, THOMAS K. F.;
LAM, TAK-WAH;
YANG, WANLING;
YIU, S. M.

Publication type:

Article

CHARACTERIZATION OF THE SPLICE SITES IN GT–AG AND GC–AG INTRONS IN HIGHER EUKARYOTES USING FULL-LENGTH cDNAs.

Published in:

Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 2, p. 309, doi. 10.1142/S0219720004000570

By:

Kitamura-Abe, Sumie;
Itoh, Hitomi;
Washio, Takanori;
Tsutsumi, Akihiro;
Tomita, Masaru

Publication type:

Article

DISSECTING THE HUMAN SPLICEOSOME THROUGH BIOINFORMATICS AND PROTEOMICS APPROACHES.

Published in:

Journal of Bioinformatics & Computational Biology, 2004, v. 1, n. 4, p. 743, doi. 10.1142/S0219720004000405

By:

Lopes, Graziela Miě Peres;
De Souza, Sandro José

Publication type:

Article

A FAST AND SENSITIVE ALGORITHM ESTs TO THE HUMAN GENOME.

Published in:

Journal of Bioinformatics & Computational Biology, 2003, v. 1, n. 2, p. 363, doi. 10.1142/S0219720003000058

By:

Ogasawara, Jun;
Morishita, Shinichi

Publication type:

Article

EXPLORING ALTERNATIVE TRANSCRIPT STRUCTURE IN THE HUMAN GENOME USING BLOCKS AND INTERPRO.

Published in:

Journal of Bioinformatics & Computational Biology, 2003, v. 1, n. 2, p. 289, doi. 10.1142/S0219720003000113

By:

Loraine, Ann E.;
Helt, Gregg A.;
Cline, Melissa S.;
Siani-Rose, Michael A.

Publication type:

Article

A naturally occurring long insertion in the first intron in the Brassica rapa FLC2 gene causes delayed bolting.

Published in:

Euphytica, 2014, v. 196, n. 2, p. 213, doi. 10.1007/s10681-013-1025-9

By:

Kitamoto, Naoko;
Yui, Susumu;
Nishikawa, Kazuhiro;
Takahata, Yoshihito;
Yokoi, Shuji

Publication type:

Article

Wx intron variations support an allohexaploid origin of the sweetpotato [ Ipomoea batatas (L.) Lam].

Published in:

Euphytica, 2011, v. 177, n. 1, p. 111, doi. 10.1007/s10681-010-0275-z

By:

Gao, Ming;
Ashu, Glory;
Stewart, Lakeisha;
Akwe, William;
Njiti, Victor;
Barnes, Sandra

Publication type:

Article

The myrobalan ( Prunus cerasifera L.): a useful diploid model for studying the molecular genetics of self-incompatibility in plums.

Published in:

Euphytica, 2009, v. 166, n. 3, p. 385, doi. 10.1007/s10681-008-9821-3

By:

Sutherland, B. G.;
Cerovič, R.;
Robbins, T. P.;
Tobutt, K. R.

Publication type:

Article

Variation ofWxmicrosatellite allele, waxy allele distribution and differentiation of chloroplast DNA in a collection of Thai rice (Oryza sativaL.).

Published in:

Euphytica, 2005, v. 140, n. 3, p. 231, doi. 10.1007/s10681-004-3783-x

By:

Prathepha, Preecha;
Baimai, Visut

Publication type:

Article

Split-inteins and their bioapplications.

Published in:

Biotechnology Letters, 2015, v. 37, n. 11, p. 2121, doi. 10.1007/s10529-015-1905-2

By:

Li, Yifeng

Publication type:

Article

Over-expression of pcvA involved in vesicle-vacuolar fusion affects the conidiation and penicillin production in Penicillium chrysogenum.

Published in:

Biotechnology Letters, 2012, v. 34, n. 3, p. 519, doi. 10.1007/s10529-011-0792-4

By:

Xu, Xinxin;
Yang, Jing;
An, Yang;
Pan, Yuanyuan;
Liu, Gang

Publication type:

Article

Adenoviral delivered eGFP-intron splicing system for multiple gene RNAi.

Published in:

Biotechnology Letters, 2011, v. 33, n. 9, p. 1723, doi. 10.1007/s10529-011-0633-5

By:

Xing Li;
Shihai Liu;
Dongyang Wang;
Hao Chen;
Haibin Xia

Publication type:

Article

Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: a emerging model biosystem for plant functional genomics.

Published in:

Biotechnology Letters, 2011, v. 33, n. 3, p. 629, doi. 10.1007/s10529-010-0475-6

By:

Sablok, Gaurav;
Gupta, P. K.;
Baek, Jong-Min;
Vazquez, Franck;
Xiang Jia Min

Publication type:

Article

Enhancement of the human factor IX expression, mediated by an intron derived fragment from the rat aldolase B gene in cultured hepatoma cells.

Published in:

Biotechnology Letters, 2010, v. 32, n. 10, p. 1385, doi. 10.1007/s10529-010-0321-x

By:

Sam, Mohammad Reza;
Zomorodipour, Alireza;
Shokrgozar, Mohammad Ali;
Ataei, Fariba;
Haddad-Mashadrizeh, Aliakbar;
Amanzadeh, Amir

Publication type:

Article

Identification of two novel xylanase-encoding genes ( xyn5 and xyn6) from Acrophialophora nainiana and heterologous expression of xyn6 in Trichoderma reesei.

Published in:

Biotechnology Letters, 2007, v. 29, n. 8, p. 1195, doi. 10.1007/s10529-007-9380-z

By:

Salles, Bruno C.;
Te'o, Valentino S. J.;
Gibbs, Moreland D.;
Bergquist, Peter L.;
Filho, Edivaldo X. F.;
Ximenes, Eduardo A.;
Nevalainen, K. M.

Publication type:

Article

Elevated expression of human alpha-1 antitrypsin mediated by yeast intron in Pichia pastoris.

Published in:

Biotechnology Letters, 2006, v. 28, n. 19, p. 1545, doi. 10.1007/s10529-006-9121-8

By:

Hasannia, S.;
Lotfi, A.;
Mahboudi, F.;
Rezaii, A.;
Rahbarizadeh, F.;
Mohsenifar, A.

Publication type:

Article

Molecular identification of β-carotene hyper-producing strains of Dunaliella from saline environments using species-specific oligonucleotides.

Published in:

Biotechnology Letters, 2002, v. 24, n. 5, p. 365, doi. 10.1023/A:1014516920887

By:

Olmos-Soto, J.;
Paniagua-Michel, J.;
Contreras, R.;
Trujillo, L.

Publication type:

Article

A new β-glucosidase gene from the zygomycete fungus Rhizomucor miehei.

Published in:

Antonie van Leeuwenhoek, 2010, v. 97, n. 1, p. 1

By:

Miklós Takó;
Adél Tóth;
László G. Nagy;
Judit Krisch;
Csaba Vágvölgyi;
Tamás Papp

Publication type:

Article

Interpretation of mtDNA RFLP variability among Aspergillus tubingensis isolates.

Published in:

Antonie van Leeuwenhoek, 2007, v. 91, n. 3, p. 209

By:

Ãkos JuhÃ¡sz;
Helga Engi;
Ilona Pfeiffer;
Judit Kucsera;
Csaba VÃ¡gvÃ¶lgyi;
Zsuzsanna Hamari

Publication type:

Article

Roles of protein subunits in RNAprotein complexes: Lessons from ribonuclease P.

Published in:

Biopolymers, 2004, v. 73, n. 1, p. 79, doi. 10.1002/bip.10521

By:

John Hsieh;
Andy J. Andrews;
Carol A. Fierke

Publication type:

Article

Association of loblolly pine xylem development gene expression with single-nucleotide polymorphisms.

Published in:

Tree Physiology, 2013, v. 33, n. 7, p. 763, doi. 10.1093/treephys/tpt054

By:

Palle, Sreenath R.;
Seeve, Candace M.;
Eckert, Andrew J.;
Wegrzyn, Jill L.;
Neale, David B.;
Loopstra, Carol A.

Publication type:

Article

Molecular cloning and characterization of two novel cellulase genes from the mollusc Ampullaria crossean.

Published in:

Journal of Comparative Physiology B: Biochemical, Systemic & Environmental Physiology, 2008, v. 178, n. 2, p. 209, doi. 10.1007/s00360-007-0214-z

By:

Rui Guo;
Ming Ding;
Si-Liang Zhang;
Gen-jun Xu;
Fu-kun Zhao

Publication type:

Article