Works matching DE "IMMUNOINFORMATICS"

Results: 143

Discovering novel biology by in silico archaeology.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 11, p. 859, doi. 10.1038/nrmicro1268

By:

Ettema, Thijs J. G.;
de Vos, Willem M.;
van der Oost, John

Publication type:

Article

ConKit: a python interface to contact predictions.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2209, doi. 10.1093/bioinformatics/btx148

By:

Simkovic, Felix;
Thomas, Jens M. H.;
Rigden, Daniel J.

Publication type:

Article

ProbOnto: ontology and knowledge base of probability distributions.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2719, doi. 10.1093/bioinformatics/btw170

By:

Swat, Maciej J.;
Grenon, Pierre;
Wimalaratne, Sarala

Publication type:

Article

FRED 2: an immunoinformatics framework for Python.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2044, doi. 10.1093/bioinformatics/btw113

By:

Schubert, Benjamin;
Walzer, Mathias;
Brachvogel, Hans-Philipp;
Szolek, András;
Mohr, Christopher;
Kohlbacher, Oliver

Publication type:

Article

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i53, doi. 10.1093/bioinformatics/btv238

By:

Safonova, Yana;
Bonissone, Stefano;
Kurpilyansky, Eugene;
Starostina, Ekaterina;
Lapidus, Alla;
Stinson, Jeremy;
DePalatis, Laura;
Sandoval, Wendy;
Lill, Jennie;
Pevzner, Pavel A.

Publication type:

Article

Shaping the interaction landscape of bioactive molecules.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3073, doi. 10.1093/bioinformatics/btt540

By:

Gfeller, David;
Michielin, Olivier;
Zoete, Vincent

Publication type:

Article

Immune system simulation online.

Published in:

Bioinformatics, 2011, v. 27, n. 14, p. 2013, doi. 10.1093/bioinformatics/btr335

By:

Rapin, Nicolas;
Lund, Ole;
Castiglione, Filippo

Publication type:

Article

EpiTOP—a proteochemometric tool for MHC class II binding prediction.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2066, doi. 10.1093/bioinformatics/btq324

By:

Dimitrov, Ivan;
Garnev, Panayot;
Flower, Darren R.;
Doytchinova, Irini

Publication type:

Article

FRED—a framework for T-cell epitope detection.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2758, doi. 10.1093/bioinformatics/btp409

By:

Feldhahn, Magdalena;
Donnes, Pierre;
Thiel, Philipp;
Kohlbacher, Oliver

Publication type:

Article

Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.

Published in:

Bioinformatics, 2008, v. 24, n. 1, p. 18, doi. 10.1093/bioinformatics/btm537

By:

Kai Ye;
K. Anton Feenstra;
Jaap Heringa;
Adriaan P. IJzerman;
Elena Marchiori

Publication type:

Article

Immunoinformatics and Similarity Analysis of House Dust Mite Tropomyosin.

Published in:

Novelty in Biomedicine, 2015, n. 4, p. 161

By:

Ranjbar, Mohammad Mehdi;
Nabian, Sedigheh;
Ahmadi, Nayeb Ali;
Ghorban, Khodayar;
Sazmand, Alireza;
Dadmanesh, Maryam;
HosseinHekmatimoghaddam, Seyed

Publication type:

Article

Challenges in the Use of in silico Tools for Predicting Peptides Binding to HLA-Class II Molecules of HCV E1, E2, and P7.

Published in:

In Silico Biology, 2009, v. 9, n. 5/6, p. 391, doi. 10.3233/ISB-2009-0422

By:

Dormer, Anton;
Pauleus, Cathelina V.;
Syverin, Mondy N.;
Dacil, Clarissa;
Smile, Peta-Gaye

Publication type:

Article

IMGT-Choreography for Immunogenetics and Immunoinformatics.

Published in:

In Silico Biology, 2005, v. 5, n. 1, p. 45

By:

Lefranc, Marie-Paule;
Clément, Oliver;
Kaas, Quentin;
Duprat, Elodie;
Chastellan, Patrick;
Coelho, Isabelle;
Combres, Kora;
Ginestoux, Chantal;
xE9;ronique#Giudicelli, V&;
Chaume, Denys;
xE9;rard#Lefranc, G&

Publication type:

Article

IMGT-ONTOLOGY for Immunogenetics and Immunoinformatics.

Published in:

In Silico Biology, 2004, v. 4, n. 1, p. 17

By:

Lefranc, Marie-Paule;
Giudecelli, Véronique;
Ginestoux, Chantal;
Bosc, Nathalie;
Folch, Géraldine;
Guiraudou, Delphine;
Jabado-Michaloud, Jourmana;
Magris, Séverine;
Scaviner, Dominique;
Thouvenin, Valéterie;
Combers, Kora;
Girod, David;
Jeanjean, Stéphanie;
Portat, Céline;
Monod, Mehdi Yousfi;
Duprat, Elodie;
Kaas, Quentin;
Pommié, Christelle;
Chaume, Denys;
Lefranc, Gérard

Publication type:

Article

The Pipeline Repertoire for Ig-Seq Analysis.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00899

By:

López-Santibáñez-Jácome, Laura;
Avendaño-Vázquez, S. Eréndira;
Flores-Jasso, Carlos Fabián

Publication type:

Article

Immunogenicity and Protective Efficacy of T-Cell Epitopes Derived From Potential Th1 Stimulatory Proteins of Leishmania (Leishmania) donovani.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00288

By:

Joshi, Sumit;
Yadav, Narendra Kumar;
Rawat, Keerti;
Kumar, Vikash;
Ali, Rafat;
Sahasrabuddhe, Amogh Anant;
Siddiqi, Mohammad Imran;
Haq, Wahajul;
Sundar, Shyam;
Dube, Anuradha

Publication type:

Article

Classification consistency analysis for bootstrapping gene selection.

Published in:

Neural Computing & Applications, 2007, v. 16, n. 6, p. 527, doi. 10.1007/s00521-007-0110-1

By:

Shaoning Pang;
Havukkala, Ilkka;
Yingjie Hu;
Kasabov, Nikola

Publication type:

Article

Computer-aided vaccine design: a brief report.

Published in:

Tehran University Medical Journal, 2012, v. 70, n. 6, p. 383

By:

Khorasgani, Razieh Ghasemi;
Sanaei, Marzieh;
Beigi, Majid Mohammad

Publication type:

Article

Computational identification, characterization and validation of potential antigenic peptide vaccines from hrHPVs E6 proteins using immunoinformatics and computational systems biology approaches.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0196484

By:

Khan, Abbas;
Junaid, Muhammad;
Kaushik, Aman Chandra;
Ali, Arif;
Ali, Syed Shujait;
Mehmood, Aamir;
Wei, Dong-Qing

Publication type:

Article

FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 192, doi. 10.1186/1471-2164-12-192

By:

Chaudhuri, Rupanjali;
Ansari, Faraz Alam;
Raghunandanan, Muthukurussi Varieth;
Ramachandran, Srinivasan

Publication type:

Article

Use of Integrated Core Proteomics, Immuno-Informatics, and In Silico Approaches to Design a Multiepitope Vaccine against Zoonotic Pathogen Edwardsiella tarda.

Published in:

Applied Microbiology (2673-8007), 2022, v. 2, n. 2, p. 414, doi. 10.3390/applmicrobiol2020031

By:

Islam, Sk Injamamul;
Mahfuj, Sarower;
Islam, Md Jakiul;
Mou, Moslema Jahan;
Sanjida, Saloa

Publication type:

Article

The lure of reviews.

Published in:: Nature Immunology, 2011, v. 12, n. 10, p. 915, doi. 10.1038/ni.2122
Publication type:: Article

Immunoinformatics approach for multiepitope vaccine design against structural proteins and ORF1a polyprotein of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2).

Published in:

Tropical Diseases, Travel Medicine & Vaccines, 2021, v. 7, n. 1, p. 1, doi. 10.1186/s40794-021-00147-1

By:

Adam, Khalid Mohamed

Publication type:

Article

Identification and cloning of highly epitopic regions of Clostridium novyi alpha toxin.

Published in:

Turkish Journal of Biology, 2016, v. 40, n. 6, p. 1219, doi. 10.3906/biy-1507-121

By:

GORD-NOSHAHRI, Najme;
NAJAFI, Mohsen Fathi;
MAKHDOUMI, Ali;
MAJIDI, Behjat;
MEHRVARZ, Mohsen

Publication type:

Article

Designing multiepitope-based vaccine against Eimeria from immune mapped protein 1 (IMP-1) antigen using immunoinformatic approach.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-97880-6

By:

Madlala, Thabile;
Adeleke, Victoria T.;
Fatoba, Abiodun J.;
Okpeku, Moses;
Adeniyi, Adebayo A.;
Adeleke, Matthew A.

Publication type:

Article

Author Correction: An immunoinformatics approach to design a multi-epitope vaccine against Mycobacterium tuberculosis exploiting secreted exosome proteins.

Published in:

2021

By:

Sharma, Rahul;
Rajput, Vikrant Singh;
Jamal, Salma;
Grover, Abhinav;
Grover, Sonam

Publication type:

Correction Notice

In silico characterisation of putative Plasmodium falciparum vaccine candidates in African malaria populations.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-95442-4

By:

Ajibola, O.;
Diop, M. F.;
Ghansah, A.;
Amenga-Etego, L.;
Golassa, L.;
Apinjoh, T.;
Randrianarivelojosia, M.;
Maiga-Ascofare, O.;
Yavo, W.;
Bouyou-Akotet, M.;
Oyebola, K. M.;
Andagalu, B.;
D'Alessandro, U.;
Ishengoma, D.;
Djimde, A. A.;
Kamau, E.;
Amambua-Ngwa, A.

Publication type:

Article

Designing a multi-epitope vaccine candidate to combat MERS-CoV by employing an immunoinformatics approach.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92176-1

By:

Mahmud, Shafi;
Rafi, Md. Oliullah;
Paul, Gobindo Kumar;
Promi, Maria Meha;
Shimu, Mst. Sharmin Sultana;
Biswas, Suvro;
Emran, Talha Bin;
Dhama, Kuldeep;
Alyami, Salem A.;
Moni, Mohammad Ali;
Saleh, Md. Abu

Publication type:

Article

In silico designing of vaccine candidate against Clostridium difficile.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93305-6

By:

Basak, Srijita;
Deb, Debashrito;
Narsaria, Utkarsh;
Kar, Tamalika;
Castiglione, Filippo;
Sanyal, Indraneel;
Bade, Pratap D.;
Srivastava, Anurag P.

Publication type:

Article

An immunoinformatics approach to design a multi-epitope vaccine against Mycobacterium tuberculosis exploiting secreted exosome proteins.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93266-w

By:

Sharma, Rahul;
Rajput, Vikrant Singh;
Jamal, Salma;
Grover, Abhinav;
Grover, Sonam

Publication type:

Article

Design of a multi-epitope vaccine against cervical cancer using immunoinformatics approaches.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91997-4

By:

Sanami, Samira;
Azadegan-Dehkordi, Fatemeh;
Rafieian-Kopaei, Mahmoud;
Salehi, Majid;
Ghasemi-Dehnoo, Maryam;
Mahooti, Mehran;
Alizadeh, Morteza;
Bagheri, Nader

Publication type:

Article

Identification of highly conserved regions in L-segment of Crimean-Congo hemorrhagic fever virus and immunoinformatic prediction about potential novel vaccine.

Published in:

Advances & Applications in Bioinformatics & Chemistry, 2015, v. 8, p. 1, doi. 10.2147/AABC.S75250

By:

Oany, Arafat Rahman;
Shah Adil Ishtiyaq Ahmad;
Hossain, Mohammad Uzzal;
Tahmina Pervin Jyoti

Publication type:

Article

Immunoinformatics Based Vaccine Design for Zea M 1 Pollen Allergen.

Published in:

Journal of Young Pharmacists, 2018, v. 10, n. 3, p. 260, doi. 10.5530/jyp.2018.10.59

By:

Basu, Anamika;
Sarkar, Anasua;
Basak, Piyali

Publication type:

Article

An immunoinformatics approach toward epitope-based vaccine design through computational tools from Bungarus caeruleus's neurotoxin.

Published in:

Journal of Young Pharmacists, 2014, v. 6, n. 2, p. 35, doi. 10.5530/jyp.2014.2.6

By:

Muhammad Ashraf, Kutub Uddin;
Barua, Prosenjit;
Saha, Ayan;
Mahammad, Nur;
Ferdoush, Jannatul;
Das, Dipesh;
Hussain, Md. Hamed;
Alam, Md. Jibran

Publication type:

Article

Discovery of T-cell Driven Subunit Vaccines from Zika Virus Genome: An Immunoinformatics Approach.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2017, v. 9, n. 4, p. 468, doi. 10.1007/s12539-017-0238-3

By:

Pradhan, Dibyabhaba;
Yadav, Monika;
Verma, Rashi;
Khan, Noor;
Jena, Lingaraja;
Jain, Arun

Publication type:

Article

Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134835

By:

Zheng, Wei;
Ruan, Jishou;
Hu, Gang;
Wang, Kui;
Hanlon, Michelle;
Gao, Jianzhao

Publication type:

Article

Human Immune Responses to H. pylori HLA Class II Epitopes Identified by Immunoinformatic Methods.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094974

By:

Zhang, Songhua;
Desrosiers, Joseph;
Aponte-Pieras, Jose R.;
DaSilva, Kristen;
Fast, Loren D.;
Terry, Frances;
Martin, William D.;
De Groot, Anne S.;
Moise, Leonard;
Moss, Steven F.

Publication type:

Article

Preexisting CD4+ T-Cell Immunity in Human Population to Avian Influenza H7N9 Virus: Whole Proteome-Wide Immunoinformatics Analyses.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0091273

By:

Duvvuri, Venkata R.;
Duvvuri, Bhargavi;
Alice, Christilda;
Wu, Gillian E.;
Gubbay, Jonathan B.;
Wu, Jianhong

Publication type:

Article

Protective Immunity against Lethal F. tularensis holarctica LVS Provided by Vaccination with Selected Novel CD8+ T Cell Epitopes.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0085215

By:

Rotem, Shahar;
Cohen, Ofer;
Bar-Haim, Erez;
Bar-On, Liat;
Ehrlich, Sharon;
Shafferman, Avigdor

Publication type:

Article

Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029903

By:

Lord, Etienne;
Leclercq, Mickael;
Boc, Alix;
Baniré Diallo, Abdoulaye;
Makarenkov, Vladimir

Publication type:

Article

Whole-Genome Immunoinformatic Analysis of F. tularensis: Predicted CTL Epitopes Clustered in Hotspots Are Prone to Elicit a T-Cell Response.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020050

By:

Zvi, Anat;
Rotem, Shahar;
Bar-Haim, Erez;
Cohen, Ofer;
Shafferman, Avigdor

Publication type:

Article

Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network.

Published in:

PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0016022

By:

Jian Cui;
Jinghua Liu;
Yuhua Li;
Tieliu Shi

Publication type:

Article

Conservation and Variability of West Nile Virus Proteins.

Published in:

PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005352

By:

Qi Ying Koo;
Khan, Asif M.;
Keun-Ok Jung;
Ramdas, Shweta;
Miotto, Olivo;
Tin Wee Tan;
Brusic, Vladimir;
Salmon, Jerome;
August, J. Thomas

Publication type:

Article

Selection‐based design of in silico dengue epitope ensemble vaccines.

Published in:

Chemical Biology & Drug Design, 2019, v. 93, n. 1, p. 21, doi. 10.1111/cbdd.13357

By:

Murphy, David;
Flower, Darren R.;
Reche, Pedro

Publication type:

Article

Envelope protein gene based molecular characterization of Japanese encephalitis virus clinical isolates from West Bengal, India: a comparative approach with respect to SA14-14-2 live attenuated vaccine strain.

Published in:

BMC Infectious Diseases, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2334-13-368

By:

Sarkar, Arindam;
Banik, Avishek;
Pathak, Bani K.;
Mukhopadhyay, Subhra K.;
Chatterjee, Shyamalendu

Publication type:

Article

Immunogenicity assessment of antileukemic agent glutaminase from Escherichia coli, Pseudomonas sp., and Bacillus sp.

Published in:

Biomedical & Biotechnology Research Journal, 2022, v. 6, n. 1, p. 138, doi. 10.4103/bbrj.bbrj_136_21

By:

Parmar, Jyotsna;
Tripathi, Shikha;
Kumar, Awanish

Publication type:

Article

Pacific Biosciences sequencing and IMGt/highV-QUest Analysis of Full-Length single Chain Fragment Variable from an In Vivo selected Phage-display Combinatorial Library.

Published in:

Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.01796

By:

Hemadou, Audrey;
Giudicelli, Véronique;
Smith, Melissa Laird;
Lefranc, Marie-Paule;
Duroux, Patrice;
Kossida, Sofia;
Heiner, Cheryl;
Hepler, N. Lance;
Kuijpers, John;
Groppi, Alexis;
Korlach, Jonas;
Mondon, Philippe;
Ottones, Florence;
Jacobin-Valat, Marie-Josée;
Laroche-Traineau, Jeanny;
Clofent-Sanchez, Gisèle

Publication type:

Article

Structural basis of development of multi-epitope vaccine against Middle East respiratory syndrome using in silico approach.

Published in:

Infection & Drug Resistance, 2018, v. 11, p. 2377, doi. 10.2147/IDR.S175114

By:

Srivastava, Sukrit;
Kamthania, Mohit;
Singh, Soni;
Saxena, Ajay K;
Sharma, Nishi

Publication type:

Article

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma.

Published in:

Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0636-8

By:

Löffler, Markus W.;
Mohr, Christopher;
Bichmann, Leon;
Freudenmann, Lena Katharina;
Walzer, Mathias;
Schroeder, Christopher M.;
Trautwein, Nico;
Hilke, Franz J.;
Zinser, Raphael S.;
Mühlenbruch, Lena;
Kowalewski, Daniel J.;
Schuster, Heiko;
Sturm, Marc;
Matthes, Jakob;
Riess, Olaf;
Czemmel, Stefan;
Nahnsen, Sven;
Königsrainer, Ingmar;
Thiel, Karolin;
Nadalin, Silvio

Publication type:

Article

Psychophysical and Neural Evidence for Emotion-Enhanced Perceptual Vividness.

Published in:

Journal of Neuroscience, 2012, v. 32, n. 33, p. 11201, doi. 10.1523/JNEUROSCI.0155-12.2012

By:

Todd, Rebecca M.;
Talmi, Deborah;
Schraitz, Taylor W.;
Susskind, Josh;
Anderson, Adam K.

Publication type:

Article