Works matching DE "IMMUNOINFORMATICS"

Results: 143

Epitope Prediction Based on Random Peptide Library Screening: Benchmark Dataset and Prediction Tools Evaluation.

Published in:

Molecules, 2011, v. 16, n. 6, p. 4971, doi. 10.3390/molecules16064971

By:

Pingping Sun;
Wenhan Chen;
Yanxin Huang;
Hongyan Wang;
Zhiqiang Ma;
Yinghua Lv

Publication type:

Article

In Silico Identification and in Vitro Analysis of B and T-Cell Epitopes of the Black Turtle Bean (Phaseolus Vulgaris L.) Lectin.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2018, v. 49, n. 4, p. 1600, doi. 10.1159/000493496

By:

Shudong He;
Jinlong Zhao;
Elfalleh, Walid;
Jemaà, Mohamed;
Hanju Sun;
Xianbao Sun;
Mingming Tang;
Qian He;
Zeyu Wu;
Florian Lang

Publication type:

Article

ConKit: a python interface to contact predictions.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2209, doi. 10.1093/bioinformatics/btx148

By:

Simkovic, Felix;
Thomas, Jens M. H.;
Rigden, Daniel J.

Publication type:

Article

ProbOnto: ontology and knowledge base of probability distributions.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2719, doi. 10.1093/bioinformatics/btw170

By:

Swat, Maciej J.;
Grenon, Pierre;
Wimalaratne, Sarala

Publication type:

Article

FRED 2: an immunoinformatics framework for Python.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2044, doi. 10.1093/bioinformatics/btw113

By:

Schubert, Benjamin;
Walzer, Mathias;
Brachvogel, Hans-Philipp;
Szolek, András;
Mohr, Christopher;
Kohlbacher, Oliver

Publication type:

Article

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i53, doi. 10.1093/bioinformatics/btv238

By:

Safonova, Yana;
Bonissone, Stefano;
Kurpilyansky, Eugene;
Starostina, Ekaterina;
Lapidus, Alla;
Stinson, Jeremy;
DePalatis, Laura;
Sandoval, Wendy;
Lill, Jennie;
Pevzner, Pavel A.

Publication type:

Article

Shaping the interaction landscape of bioactive molecules.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3073, doi. 10.1093/bioinformatics/btt540

By:

Gfeller, David;
Michielin, Olivier;
Zoete, Vincent

Publication type:

Article

Immune system simulation online.

Published in:

Bioinformatics, 2011, v. 27, n. 14, p. 2013, doi. 10.1093/bioinformatics/btr335

By:

Rapin, Nicolas;
Lund, Ole;
Castiglione, Filippo

Publication type:

Article

Utilizing Immunoinformatics for mRNA Vaccine Design against Influenza D Virus.

Published in:

BioMedInformatics, 2024, v. 4, n. 2, p. 1572, doi. 10.3390/biomedinformatics4020086

By:

Oladipo, Elijah Kolawole;
Adeyemo, Stephen Feranmi;
Akinboade, Modinat Wuraola;
Akinleye, Temitope Michael;
Siyanbola, Kehinde Favour;
Adeogun, Precious Ayomide;
Ogunfidodo, Victor Michael;
Adekunle, Christiana Adewumi;
Elutade, Olubunmi Ayobami;
Omoathebu, Esther Eghogho;
Taiwo, Blessing Oluwatunmise;
Akindiya, Elizabeth Olawumi;
Ochola, Lucy;
Onyeaka, Helen

Publication type:

Article

Human Gm, Km, and Am Allotypes: WHO/IMGT Nomenclature and IMGT Unique Numbering for Immunoinformatics and Therapeutical Antibodies.

Published in:

BioMedInformatics, 2023, v. 3, n. 3, p. 649, doi. 10.3390/biomedinformatics3030044

By:

Lefranc, Marie-Paule;
Lefranc, Gérard

Publication type:

Article

Immunoinformatic Approaches to Identify Immune Epitopes and Design an Epitope-Based Subunit Vaccine against Emerging Tilapia Lake Virus (TiLV).

Published in:

Aquaculture Journal, 2022, v. 2, n. 2, p. 186, doi. 10.3390/aquacj2020010

By:

Islam, Sk Injamamul;
Mahfuj, Sarower;
Alam, Md. Ashraful;
Ara, Yeasmin;
Sanjida, Saloa;
Mou, Moslema Jahan

Publication type:

Article

Epitope-Based Peptide Vaccine Against Fructose-Bisphosphate Aldolase of Madurella mycetomatis Using Immunoinformatics Approaches.

Published in:

Bioinformatics & Biology Insights, 2018, n. 12, p. 1, doi. 10.1177/1177932218809703

By:

Mohammed, Arwa A.;
ALnaby, Ayman M. H.;
Sabeel, Solima M.;
AbdElmarouf, Fagr M.;
Dirar, Amina I.;
Ali, Mostafa M.;
Khandgawi, Mustafa A.;
Yousif, Abdelhameed M.;
Abdulgadir, Eman M.;
Sabahalkhair, Magdi A.;
Abbas, Ayman E.;
Hassan, Mohammed A.

Publication type:

Article

Immunoinformatics: an overview of computational tools and techniques for understanding immune function.

Published in:

Expert Review of Clinical Immunology, 2007, v. 3, n. 6, p. 993, doi. 10.1586/1744666X.3.6.993

By:

von Herrath, Matthias;
Taylor, Paul

Publication type:

Article

Structure based sequence analysis & epitope prediction of gp41 HIV1 envelope glycoprotein isolated in Pakistan.

Published in:

Genetic Vaccines & Therapy, 2012, v. 10, n. 1, p. 4, doi. 10.1186/1479-0556-10-4

By:

Samra Jafri, Syyada;
Kiran, Saliha;
Babar Jamal, Syed;
Shah, Masaud

Publication type:

Article

A Novel design of multi-epitope based vaccine against Escherichia coli.

Published in:

Microbes & Infectious Diseases, 2022, v. 3, n. 2, p. 407, doi. 10.21608/MID.2021.55310.1101

By:

O. M., Adeoti;
A. O., Jimoh;
A. V., Akinsooto;
A. K., Agboluaje;
A. O., Aderinto;
T. A., Sanusi;
D. A., Adesina;
K. A., Komolafe;
O. J., Olaoye

Publication type:

Article

From In silico Protein Epitope Density Prediction to Testing Escherichia coli O157:H7 Vaccine Candidates in a Murine Model of Colonization.

Published in:

Frontiers in Cellular & Infection Microbiology, 2016, v. 6, p. 1, doi. 10.3389/fcimb.2016.00094

By:

Tapia, Daniel;
Ross, Brittany N.;
Kalita, Anjana;
Kalita, Mridul;
Hatcher, Christopher L.;
Muruato, Laura A.;
Torres, Alfredo G.

Publication type:

Article

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma.

Published in:

Genome Medicine, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13073-019-0636-8

By:

Löffler, Markus W.;
Mohr, Christopher;
Bichmann, Leon;
Freudenmann, Lena Katharina;
Walzer, Mathias;
Schroeder, Christopher M.;
Trautwein, Nico;
Hilke, Franz J.;
Zinser, Raphael S.;
Mühlenbruch, Lena;
Kowalewski, Daniel J.;
Schuster, Heiko;
Sturm, Marc;
Matthes, Jakob;
Riess, Olaf;
Czemmel, Stefan;
Nahnsen, Sven;
Königsrainer, Ingmar;
Thiel, Karolin;
Nadalin, Silvio

Publication type:

Article

Classification consistency analysis for bootstrapping gene selection.

Published in:

Neural Computing & Applications, 2007, v. 16, n. 6, p. 527, doi. 10.1007/s00521-007-0110-1

By:

Shaoning Pang;
Havukkala, Ilkka;
Yingjie Hu;
Kasabov, Nikola

Publication type:

Article

Computational identification, characterization and validation of potential antigenic peptide vaccines from hrHPVs E6 proteins using immunoinformatics and computational systems biology approaches.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0196484

By:

Khan, Abbas;
Junaid, Muhammad;
Kaushik, Aman Chandra;
Ali, Arif;
Ali, Syed Shujait;
Mehmood, Aamir;
Wei, Dong-Qing

Publication type:

Article

Analysis of Promiscuous T cell Epitopes for Vaccine Development Against West Nile Virus Using Bioinformatics Approaches.

Published in:

International Journal of Peptide Research & Therapeutics, 2018, v. 24, n. 3, p. 377, doi. 10.1007/s10989-017-9624-2

By:

Sharma, Pawan;
Sharma, Priti;
Mishra, Sanjay;
Kumar, Ajay

Publication type:

Article

Immunoinformatic Identification of Potential Epitopes Against Shigellosis.

Published in:

International Journal of Peptide Research & Therapeutics, 2016, v. 22, n. 4, p. 481, doi. 10.1007/s10989-016-9528-6

By:

Sharma, Drashya;
Patel, Shivangi;
Padh, Harish;
Desai, Priti

Publication type:

Article

Psychophysical and Neural Evidence for Emotion-Enhanced Perceptual Vividness.

Published in:

Journal of Neuroscience, 2012, v. 32, n. 33, p. 11201, doi. 10.1523/JNEUROSCI.0155-12.2012

By:

Todd, Rebecca M.;
Talmi, Deborah;
Schraitz, Taylor W.;
Susskind, Josh;
Anderson, Adam K.

Publication type:

Article

Dynamic models of immune responses: what is the ideal level of detail?

Published in:

Theoretical Biology & Medical Modelling, 2010, v. 7, p. 35, doi. 10.1186/1742-4682-7-35

By:

Thakar, Juilee;
Poss, Mary;
Albert, Réka;
Long, Gráinne H.;
Zhang, Ranran

Publication type:

Article

UT-KBRIN Bioinformatics Summit 2014: Abstracts.

Published in:: 2014
Publication type:: Abstract

Computational vaccinology and the ICoVax 2012 workshop.

Published in:

BMC Bioinformatics, 2013, v. 14, n. S4, p. 1, doi. 10.1186/1471-2105-14-S4-I1

By:

He, Yongqun;
Cao, Zhiwei;
De Groot, Anne S.;
Brusic, Vladimir;
Schönbach, Christian;
Petrovsky, Nikolai

Publication type:

Article

Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 522, doi. 10.1186/1471-2105-11-522

By:

Hartsperger, Mara L.;
Blöchl, Florian;
Stümpflen, Volker;
Theis, Fabian J.

Publication type:

Article

SING: Subgraph search In Non-homogeneousGraphs.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 96, doi. 10.1186/1471-2105-11-96

By:

Di Natale, Raffaele;
Ferro, Alfredo;
Giugno, Rosalba;
Mongiovì, Misael;
Pulvirenti, Alfredo;
Shasha, Dennis

Publication type:

Article

LINNAEUS: A species name identification systemfor biomedical literature.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 85, doi. 10.1186/1471-2105-11-85

By:

Gerner, Martin;
Nenadic, Goran;
Bergman, Casey M.

Publication type:

Article

Testing the additional predictive value ofhigh-dimensional molecular data.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 78, doi. 10.1186/1471-2105-11-78

By:

Boulesteix, Anne-Laure;
Hothorn, Torsten

Publication type:

Article

SVRMHC prediction server for MHC-binding peptides.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 463, doi. 10.1186/1471-2105-7-463

By:

Ji Wan;
Wen Liu;
Qiqi Xu;
Yongliang Ren;
Flower, Darren R;
Tongbin Li

Publication type:

Article

Transcriptional programming of human macrophages: on the way to systems immunology.

Published in:

Journal of Molecular Medicine, 2015, v. 93, n. 6, p. 589, doi. 10.1007/s00109-015-1286-y

By:

Schultze, Joachim

Publication type:

Article

EpiTOP—a proteochemometric tool for MHC class II binding prediction.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2066, doi. 10.1093/bioinformatics/btq324

By:

Dimitrov, Ivan;
Garnev, Panayot;
Flower, Darren R.;
Doytchinova, Irini

Publication type:

Article

FRED—a framework for T-cell epitope detection.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2758, doi. 10.1093/bioinformatics/btp409

By:

Feldhahn, Magdalena;
Donnes, Pierre;
Thiel, Philipp;
Kohlbacher, Oliver

Publication type:

Article

Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.

Published in:

Bioinformatics, 2008, v. 24, n. 1, p. 18, doi. 10.1093/bioinformatics/btm537

By:

Kai Ye;
K. Anton Feenstra;
Jaap Heringa;
Adriaan P. IJzerman;
Elena Marchiori

Publication type:

Article

Use of Integrated Core Proteomics, Immuno-Informatics, and In Silico Approaches to Design a Multiepitope Vaccine against Zoonotic Pathogen Edwardsiella tarda.

Published in:

Applied Microbiology (2673-8007), 2022, v. 2, n. 2, p. 414, doi. 10.3390/applmicrobiol2020031

By:

Islam, Sk Injamamul;
Mahfuj, Sarower;
Islam, Md Jakiul;
Mou, Moslema Jahan;
Sanjida, Saloa

Publication type:

Article

Immunogenicity assessment of antileukemic agent glutaminase from Escherichia coli, Pseudomonas sp., and Bacillus sp.

Published in:

Biomedical & Biotechnology Research Journal, 2022, v. 6, n. 1, p. 138, doi. 10.4103/bbrj.bbrj_136_21

By:

Parmar, Jyotsna;
Tripathi, Shikha;
Kumar, Awanish

Publication type:

Article

In-silico Analysis of Pneumococcal Heat-Shock Protein (DnaJ) to Predict Novel Multi-Epitope Vaccine Candidates.

Published in:

Vaccine Research, 2021, v. 8, n. 2, p. 65, doi. 10.52547/vacres.8.2.65

By:

Afshari, Elnaz;
Cohan, Reza Ahangari;
Sotoodehnejadnematalahi, Fattah;
Mousavi, Seyed Fazlollah

Publication type:

Article

Designing multiepitope-based vaccine against Eimeria from immune mapped protein 1 (IMP-1) antigen using immunoinformatic approach.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-97880-6

By:

Madlala, Thabile;
Adeleke, Victoria T.;
Fatoba, Abiodun J.;
Okpeku, Moses;
Adeniyi, Adebayo A.;
Adeleke, Matthew A.

Publication type:

Article

Genome-wide identification of novel vaccine candidates for Plasmodium falciparum malaria using integrative bioinformatics approaches.

Published in:

3 Biotech, 2017, v. 7, n. 5, p. 1, doi. 10.1007/s13205-017-0947-7

By:

Singh, Satarudra;
Srivastava, Deeksha;
Mishra, Bhartendu

Publication type:

Article

Is <italic>PLOS ONE</italic> Attracting Highly Cited Papers in the Food Sciences? Comparing Authors' Most Cited Work to Their <italic>PLOS ONE</italic> Articles Published 2006-2016.

Published in:

Journal of Agricultural & Food Information, 2018, v. 19, n. 1, p. 97, doi. 10.1080/10496505.2017.1363653

By:

Stankus, Tony

Publication type:

Article

BOOK REVIEWS: 14.

Published in:

2005

By:

Zimmermann, Karl-Heinz

Publication type:

Book Review

Selection‐based design of in silico dengue epitope ensemble vaccines.

Published in:

Chemical Biology & Drug Design, 2019, v. 93, n. 1, p. 21, doi. 10.1111/cbdd.13357

By:

Murphy, David;
Flower, Darren R.;
Reche, Pedro

Publication type:

Article

Computer-Aided vaccine design for selected positive-sense single stranded RNA viruses.

Published in:

Indian Journal of Biochemistry & Biophysics, 2023, v. 60, n. 4, p. 281, doi. 10.56042/ijbb.v60i4.68236

By:

Pandian, Chitra Jeyaraj;
Murugan, N. Arul;
Rajendren, S. M.;
Jeyaraman, Jeyakanthan

Publication type:

Article

Standard identifier could mobilize data and free time.

Published in:

Nature, 2008, v. 453, n. 7194, p. 449, doi. 10.1038/453449c

By:

Roberts, Dave;
Chavan, Vishwas

Publication type:

Article

Integrating immunoinformatics and computational epitope prediction for a vaccine candidate against respiratory syncytial virus.

Published in:

Infectious Disease Modelling (2468-2152), 2024, v. 9, n. 3, p. 763, doi. 10.1016/j.idm.2024.04.005

By:

Nguyen, Truc Ly;
Kim, Heebal

Publication type:

Article

Designing a multi-epitope vaccine against Peptostreptococcus anaerobius based on an immunoinformatics approach.

Published in:

Synthetic & Systems Biotechnology, 2023, v. 8, n. 4, p. 757, doi. 10.1016/j.synbio.2023.11.004

By:

Yudan Mao;
Xianzun Xiao;
Jie Zhang;
Xiangyu Mou;
Wenjing Zhao

Publication type:

Article

Immunoinformatics approach for multiepitope vaccine design against structural proteins and ORF1a polyprotein of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2).

Published in:

Tropical Diseases, Travel Medicine & Vaccines, 2021, v. 7, n. 1, p. 1, doi. 10.1186/s40794-021-00147-1

By:

Adam, Khalid Mohamed

Publication type:

Article

EPIPOX: Immunoinformatic Characterization of the Shared T-Cell Epitome between Variola Virus and Related Pathogenic Orthopoxviruses.

Published in:

Journal of Immunology Research, 2015, p. 1, doi. 10.1155/2015/738020

By:

Molero-Abraham, Magdalena;
Glutting, John-Paul;
Flower, Darren R.;
Lafuente, Esther M.;
Reche, Pedro A.

Publication type:

Article

Advances in Computational Immunology.

Published in:

2015

By:

Pappalardo, Francesco;
Brusic, Vladimir;
Pennisi, Marzio;
Zhang, Guanglan

Publication type:

Editorial

CHALLENGES AND OPPORTUNITIES IN THE ICT SECTOR DURING AND POST-COVID-19 PANDEMIC.

Published in:

Horizons Series B, 2021, n. 9, p. 29, doi. 10.20544/HORIZONS.B.09.2.P03

By:

Ristevski, Blagoj;
Jolevski, Ilija;
Savoska, Snezana;
Blazheska-Tabakovska, Natasha;
Bogdanoska-Jovanovska, Mimoza

Publication type:

Article