Works about HORIZONTAL gene transfer

Results: 2466

PacBio-based de novo transcriptomics of the coconut rhinoceros beetle Oryctes rhinoceros identifies physiologically important full-length genes and sheds insights into the molecular relationship (chitin synthase) between Scarabaeidae (Coleoptera) and Hymenoptera

Published in:

3 Biotech, 2025, v. 15, n. 6, p. 1, doi. 10.1007/s13205-025-04348-9

By:

Bhuvaragavan, Sreeramulu;
Sruthi, Kannan;
Nivetha, Ramanathan;
Keerthana, Chitti Babu;
Marieshwari, Balashanmuga Nehru;
Janarthanan, Sundaram

Publication type:

Article

Horizontal gene transfer of molecular weapons can reshape bacterial competition.

Published in:

PLoS Biology, 2025, v. 23, n. 5, p. 1, doi. 10.1371/journal.pbio.3003095

By:

Granato, Elisa T.;
Palmer, Jacob D.;
Kirk, Christian;
Sharp, Connor;
Shillcock, George;
Foster, Kevin R.

Publication type:

Article

Identification of insertion sites for the integrative and conjugative element Tn916 in the Bacillus subtilis chromosome.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0318964

By:

Bean, Emily L.;
Smith, Janet L.;
Grossman, Alan D.

Publication type:

Article

Massive acquisition of conjugative and mobilizable integrated elements fuels Faecalibacterium plasticity and hints at their adaptation to the gut.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-99981-y

By:

Guédon, Gérard;
Charron-Bourgoin, Florence;
Lacroix, Thomas;
Hamadouche, Toufik;
Soler, Nicolas;
Douzi, Badreddine;
Chiapello, Hélène;
Leblond-Bourget, Nathalie

Publication type:

Article

What lies beneath: microbial quality of rural groundwater explored by shotgun metagenomics.

Published in:

Annals of Microbiology, 2025, v. 75, n. 1, p. 1, doi. 10.1186/s13213-025-01801-1

By:

Mattar, Manar-Aleslam M.;
Eraqi, Walaa A.;
Zaki, Mohamed Bakr;
Elkashlan, Akram M.;
Abouzid, Khaled A. M.;
Aziz, Ramy K.;
Yassin, Aymen S.;
Elbehery, Ali H. A.

Publication type:

Article

De Novo Gene Birth.

Published in:

Molecular Biology, 2025, v. 59, n. 1, p. 17, doi. 10.1134/S0026893324700687

By:

Aristova, E. O.;
Volkhin, I. A.;
Denisova, A. A.;
Nikitin, P. A.;
Petrukhin, E. R.

Publication type:

Article

Organelle genomes of two Scaevola species, S. taccada and S. hainanensis , provide new insights into evolutionary divergence between Scaevola and its related species.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1587750

By:

Meng, Danni;
Lu, Tianxin;
He, Meng;
Ren, Yuze;
Fu, Mumei;
Zhang, Yuxiao;
Yang, Peifeng;
Lin, Xinyu;
Yang, Yong;
Zhang, Ying;
Yang, Yuchen;
Jin, Xiang

Publication type:

Article

Analysis of the complete mitogenomes of three high economic value tea plants (Tea-oil Camellia) provide insights into evolution and phylogeny relationship.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1549185

By:

Liang, Heng;
Qi, Huasha;
Wang, Chunmei;
Wang, Yidan;
Liu, Moyang;
Chen, Jiali;
Sun, Xiuxiu;
Xia, Tengfei;
Feng, Shiling;
Chen, Cheng;
Zheng, Daojun

Publication type:

Article

Interpreting roles of mutations associated with the emergence of S. aureus USA300 strains using transcriptional regulatory network reconstruction.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.90668

By:

Poudel, Saugat;
Hyun, Jason;
Ying Hefner;
Monk, Jon;
Nizet, Victor;
Palsson, Bernhard O.

Publication type:

Article

Horizontal Transfer of Bacterial Operons into Eukaryote Genomes.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 4, p. 1, doi. 10.1093/gbe/evaf055

By:

Kogay, Roman;
Wolf, Yuri I;
Koonin, Eugene V

Publication type:

Article

Engineering conjugative plasmids for inducible horizontal DNA transfer.

Published in:

Canadian Journal of Microbiology, 2025, v. 71, p. 1, doi. 10.1139/cjm-2024-0241

By:

Jaafar, Tahani;
Carvalhais, Emily;
Shrestha, Arina;
Cochrane, Ryan R.;
Meaney, Jordyn S.;
Brumwell, Stephanie L.;
Hamadache, Samir;
Nasrollahi, Vida;
Karas, Bogumil J.

Publication type:

Article

Chromosome-scale scaffolds of the fungus gnat genome reveal multi-Mb-scale chromosome-folding interactions, centromeric enrichments of retrotransposons, and candidate telomere sequences.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11573-2

By:

Urban, John M.;
Gerbi, Susan A.;
Spradling, Allan C.

Publication type:

Article

Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf082

By:

Wang, Hanchen;
Wang, Deyi;
Shao, Bingyi;
Li, Jingrui;
Li, Zhanghai;
Chase, Mark W;
Li, Jianwu;
Feng, Yanlei;
Wen, Yingying;
Qin, Shiyu;
Chen, Binghua;
Wu, Zhiqiang;
Jin, Xiaohua

Publication type:

Article

Evolution of a Plasmid Regulatory Circuit Ameliorates Plasmid Fitness Cost.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf062

By:

Elg, Clinton A;
Mack, Erin;
Rolfsmeier, Michael;
McLean, Thomas C;
Sneddon, David;
Kosterlitz, Olivia;
Soderling, Elizabeth;
Narum, Solana;
Rowley, Paul A;
Sullivan, Jack;
Thomas, Christopher M;
Top, Eva M

Publication type:

Article

Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer.

Published in:

PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001942

By:

Remigi, Philippe;
Capela, Delphine;
Clerissi, Camille;
Tasse, Léna;
Torchet, Rachel;
Bouchez, Olivier;
Batut, Jacques;
Cruveiller, Stéphane;
Rocha, Eduardo P. C.;
Masson-Boivin, Catherine

Publication type:

Article

The Cobweb of Life Revealed by Genome-Scale Estimates of Horizontal Gene Transfer.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030316

By:

Ge, Fan;
Wang, Li-San;
Kim, Junhyong

Publication type:

Article

Prosthetic Symbiosis.

Published in:

CR: The New Centennial Review, 2022, v. 22, n. 1, p. 157, doi. 10.14321/crnewcentrevi.22.1.0157

By:

Woods, Derek

Publication type:

Article

Author Index Volume 20 (2022).

Published in:: Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 6, p. 1, doi. 10.1142/S0219720022990013
Publication type:: Article

Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 4, p. 1, doi. 10.1142/S0219720022500123

By:

Tahiri, Nadia;
Veriga, Andrey;
Koshkarov, Aleksandr;
Morozov, Boris

Publication type:

Article

Identifying duplications and lateral gene transfers simultaneously and rapidly.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1142/S0219720021500335

By:

Chen, Zhi-Zhong;
Deng, Fei;
Wang, Lusheng

Publication type:

Article

Comparing the topology of phylogenetic network generators.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021400126

By:

Janssen, Remie;
Liu, Pengyu

Publication type:

Article

GI-Cluster: Detecting genomic islands via consensus clustering on multiple features.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 3, p. N.PAG, doi. 10.1142/S0219720018400103

By:

Lu, Bingxin;
Leong, Hon Wai

Publication type:

Article

THE PURITY MEASURE FOR GENOMIC REGIONS LEADS TO HORIZONTALLY TRANSFERRED GENES.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 6, p. 1, doi. 10.1142/S0219720013430026

By:

YUTA TANIGUCHI;
YASUHIRO YAMADA;
OSAMU MARUYAMA;
SATORU KUHARA;
DAISUKE IKEDA

Publication type:

Article

Evolution of LuxR solos in bacterial communication: receptors and signals.

Published in:

Biotechnology Letters, 2020, v. 42, n. 2, p. 181, doi. 10.1007/s10529-019-02763-6

By:

Xu, Gangming

Publication type:

Article

An Eco-evolutionary Model on Surviving Lysogeny Through Grounding and Accumulation of Prophages.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 3068, doi. 10.1007/s00248-023-02301-y

By:

Sudhakari, Pavithra Anantharaman;
Ramisetty, Bhaskar Chandra Mohan

Publication type:

Article

Studies of Phylogeny, Symbiotic Functioning and Ecological Traits of Indigenous Microsymbionts Nodulating Bambara Groundnut (Vigna subterranea L. Verdc) in Eswatini.

Published in:

Microbial Ecology, 2021, v. 82, n. 3, p. 688, doi. 10.1007/s00248-021-01684-0

By:

Dlamini, Sibusiso T.;
Jaiswal, Sanjay K.;
Mohammed, Mustapha;
Dakora, Felix D.

Publication type:

Article

Sediment Plasmidome of the Gulfs of Kathiawar Peninsula and Arabian Sea: Insights Gained from Metagenomics Data.

Published in:

Microbial Ecology, 2021, v. 81, n. 2, p. 540, doi. 10.1007/s00248-020-01587-6

By:

Mootapally, Chandrashekar;
Mahajan, Mayur S.;
Nathani, Neelam M.

Publication type:

Article

Diverse Genomic Backgrounds Vs. Highly Conserved Symbiotic Genes in Sesbania-Nodulating Bacteria: Shaping of the Rhizobial Community by Host and Soil Properties.

Published in:

Microbial Ecology, 2020, v. 80, n. 1, p. 158, doi. 10.1007/s00248-020-01489-7

By:

Zhang, Zhenpeng;
Liu, Wei;
Shao, Shuai;
Wang, En-Tao;
Li, Yan

Publication type:

Article

The Marine Bacterium Shewanella woodyi Produces C8-HSL to Regulate Bioluminescence.

Published in:

Microbial Ecology, 2020, v. 79, n. 4, p. 865, doi. 10.1007/s00248-019-01454-z

By:

Hayek, Mahmoud;
Baraquet, Claudine;
Lami, Raphaël;
Blache, Yves;
Molmeret, Maëlle

Publication type:

Article

Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota.

Published in:

Microbial Ecology, 2019, v. 77, n. 2, p. 546, doi. 10.1007/s00248-018-1228-7

By:

Bag, Satyabrata;
Ghosh, Tarini Shankar;
Banerjee, Sayantan;
Mehta, Ojasvi;
Verma, Jyoti;
Dayal, Mayanka;
Desigamani, Anbumani;
Kumar, Pawan;
Saha, Bipasa;
Kedia, Saurabh;
Ahuja, Vineet;
Ramamurthy, Thandavarayan;
Das, Bhabatosh

Publication type:

Article

Microbial and Functional Biodiversity Patterns in Sponges that Accumulate Bromopyrrole Alkaloids Suggest Horizontal Gene Transfer of Halogenase Genes.

Published in:

Microbial Ecology, 2018, v. 76, n. 3, p. 825, doi. 10.1007/s00248-018-1172-6

By:

Rua, Cintia P. J.;
de Oliveira, Louisi S.;
Froes, Adriana;
Tschoeke, Diogo A.;
Soares, Ana Carolina;
Leomil, Luciana;
Gregoracci, Gustavo B.;
Coutinho, Ricardo;
Hajdu, Eduardo;
Thompson, Cristiane C.;
Berlinck, Roberto G. S.;
Thompson, Fabiano L.

Publication type:

Article

Plant Growth-Promoting Genes can Switch to be Virulence Factors via Horizontal Gene Transfer.

Published in:

Microbial Ecology, 2018, v. 76, n. 3, p. 579, doi. 10.1007/s00248-018-1163-7

By:

Stritzler, Margarita;
Soto, Gabriela;
Ayub, Nicolás

Publication type:

Article

Horizontal Gene Transfer of Phytochelatin Synthases from Bacteria to Extremophilic Green Algae.

Published in:

Microbial Ecology, 2017, v. 73, n. 1, p. 50, doi. 10.1007/s00248-016-0848-z

By:

Olsson, Sanna;
Penacho, Vanessa;
Puente-Sánchez, Fernando;
Díaz, Silvia;
Gonzalez-Pastor, José;
Aguilera, Angeles

Publication type:

Article

IncP-1β Plasmids Are Important Carriers of Fitness Traits for Variovorax Species in the Mycosphere-Two Novel Plasmids, pHB44 and pBS64, with Differential Effects Unveiled.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 141, doi. 10.1007/s00248-014-0550-y

By:

Zhang, Miaozhi;
Warmink, Jan;
Pereira e Silva, Michele;
Brons, Jolanda;
Smalla, Kornelia;
van Elsas, Jan

Publication type:

Article

AsymmeTree : A Flexible Python Package for the Simulation of Complex Gene Family Histories.

Published in:

Software (2674-113X), 2022, v. 1, n. 3, p. 276, doi. 10.3390/software1030013

By:

Schaller, David;
Hellmuth, Marc;
Stadler, Peter F.

Publication type:

Article

Distribution and genetic characterization of bird rape mustard (Brassica rapa) populations and analysis of glyphosate resistance introgression.

Published in:

Pest Management Science, 2022, v. 78, n. 12, p. 5471, doi. 10.1002/ps.7170

By:

Laforest, Martin;
Martin, Sara;
Soufiane, Brahim;
Bisaillon, Katherine;
Maheux, Lydia;
Fortin, Sylvain;
James, Tracey;
Miville, David;
Marcoux, Annie;
Simard, Marie‐Josée

Publication type:

Article

Parental silencing of a horizontally transferred carotenoid desaturase gene causes a reduction of red pigment and fitness in the pea aphid.

Published in:

Pest Management Science, 2020, v. 76, n. 7, p. 2423, doi. 10.1002/ps.5783

By:

Ding, Bi‐Yue;
Niu, Jinzhi;
Shang, Feng;
Yang, Li;
Zhang, Wei;
Smagghe, Guy;
Wang, Jin‐Jun

Publication type:

Article

Biomechanical modeling of spatiotemporal bacteria-phage competition.

Published in:

Communications Physics, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42005-025-02078-1

By:

Valdez, Andrés;
Sun, Hui;
Weiss, Howard Howie;
Aranson, Igor

Publication type:

Article

Biomechanical modeling of spatiotemporal bacteria-phage competition.

Published in:

Communications Physics, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42005-025-02078-1

By:

Valdez, Andrés;
Sun, Hui;
Weiss, Howard Howie;
Aranson, Igor

Publication type:

Article

Extracellular vesicles of minimalistic Mollicutes as mediators of immune modulation and horizontal gene transfer.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08099-4

By:

Wagner, Theresa Maria;
Torres-Puig, Sergi;
Yimthin, Thatcha;
Irobalieva, Rossitza N.;
Heller, Manfred;
Kaessmeyer, Sabine;
Démoulins, Thomas;
Jores, Jörg

Publication type:

Article

Effect of Cow Bone Addition on the Humification, Heavy Metals Passivation and Fate of Resistance Genes During Swine Manure Composting.

Published in:

Fermentation (Basel), 2024, v. 10, n. 12, p. 603, doi. 10.3390/fermentation10120603

By:

Chen, Shanshuai;
Feng, Xiaoqiang;
Fu, Maode;
Jin, Xin

Publication type:

Article

Biocontainment Techniques and Applications for Yeast Biotechnology.

Published in:

Fermentation (Basel), 2023, v. 9, n. 4, p. 341, doi. 10.3390/fermentation9040341

By:

Pavão, Guilherme;
Sfalcin, Isabela;
Bonatto, Diego

Publication type:

Article

Identification and Transferability of Tetracycline Resistance in Streptococcus thermophilus during Milk FermeIdentification and Transferability of Tetracycline Resistance in Streptococcus thermophilus during Milk Fermentation, Storage, and Gastrointestinal Transitntation, Storage, and Gastrointestinal Transit.

Published in:

Fermentation (Basel), 2021, v. 7, n. 2, p. 1, doi. 10.3390/fermentation7020065

By:

Tarrah, Armin;
Pakroo, Shadi;
Corich, Viviana;
Giacomini, Alessio

Publication type:

Article

果生刺盘孢侵染苹果致病关键基因 Cfcyp450 的功能.

Published in:

Mycosystema, 2023, v. 42, n. 3, p. 770, doi. 10.13346/j.mycosystema.220204

By:

陈金珠;
王静钶;
刘广利;
卢一鸣;
梁晓飞;
孙广宇;
张荣

Publication type:

Article

Assessment of soil bacterial diversity in long-term cultivation of virus-resistant GM papaya.

Published in:

Plant & Soil, 2025, v. 508, n. 1, p. 499, doi. 10.1007/s11104-024-06813-5

By:

Thongrak, Kunnika;
Wonnapinij, Passorn;
Swatdipong, Akarapong;
Vuttipongchaikij, Supachai;
Suttangkakul, Anongpat

Publication type:

Article

Evolution of novel Mesorhizobium genospecies that competitively and effectively nodulate Cicer arietinum following inoculation with the Australian commercial inoculant strain M. ciceri CC1192.

Published in:

Plant & Soil, 2025, v. 507, n. 1, p. 397, doi. 10.1007/s11104-024-06739-y

By:

Hill, Yvette J.;
Kohlmeier, MacLean G.;
Agha Amiri, Alireza;
O'Hara, Graham W.;
Terpolilli, Jason J.

Publication type:

Article

Symbiotic effectiveness, ecological adaptation and phylogenetic diversity of chickpea rhizobia isolated from a large-scale Australian soil collection.

Published in:

Plant & Soil, 2021, v. 469, n. 1/2, p. 49, doi. 10.1007/s11104-021-05119-0

By:

Zaw, Myint;
Rathjen, Judith R.;
Zhou, Yi;
Ryder, Maarten H.;
Denton, Matthew D.

Publication type:

Article

Inter‐domain horizontal gene transfer of nickel‐binding superoxide dismutase.

Published in:

Geobiology, 2021, v. 19, n. 5, p. 450, doi. 10.1111/gbi.12448

By:

Sutherland, K. M.;
Ward, L. M.;
Colombero, C.‐R.;
Johnston, D. T.

Publication type:

Article

Radiation of nitrogen‐metabolizing enzymes across the tree of life tracks environmental transitions in Earth history.

Published in:

Geobiology, 2021, v. 19, n. 1, p. 18, doi. 10.1111/gbi.12419

By:

Parsons, Chris;
Stüeken, Eva E.;
Rosen, Caleb J.;
Mateos, Katherine;
Anderson, Rika E.

Publication type:

Article

Dating phototrophic microbial lineages with reticulate gene histories.

Published in:

Geobiology, 2018, v. 16, n. 2, p. 179, doi. 10.1111/gbi.12273

By:

Magnabosco, C.;
Moore, K. R.;
Wolfe, J. M.;
Fournier, G. P.

Publication type:

Article