Works matching DE "HOMOLOGY (Biochemistry)"

Results: 749

帕米尔牦牛 CXCL17 基因克隆及组织表达分析.

Published in:

China Herbivore Science, 2025, v. 45, n. 3, p. 53, doi. 10.3969/j.issn.2095-3887.2024.00.133

By:

马超凡;
王佟;
周永龙;
郑青波;
邓婧瑛;
于沁冉;
周瑞;
孔思远;
包鹏甲;
阎萍

Publication type:

Article

Substrate-induced rearrangements in glutamate-transporter homologs.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 10, p. 1142, doi. 10.1038/nsmb.2685

By:

Kanner, Baruch I

Publication type:

Article

Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 766, doi. 10.1038/nsmb.2569

By:

Quistgaard, Esben M;
Löw, Christian;
Moberg, Per;
Trésaugues, Lionel;
Nordlund, Pär

Publication type:

Article

From pseudo-ceRNAs to circ-ceRNAs: a tale of cross-talk and competition.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 5, p. 541, doi. 10.1038/nsmb.2580

By:

Taulli, Riccardo;
Loretelli, Cristian;
Pandolfi, Pier Paolo

Publication type:

Article

Multimodal microtubule binding by the Ndc80 kinetochore complex.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1161, doi. 10.1038/nsmb.2411

By:

Alushin, Gregory M;
Musinipally, Vivek;
Matson, Daniel;
Tooley, John;
Stukenberg, P Todd;
Nogales, Eva

Publication type:

Article

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 744, doi. 10.1038/nsmb.2308

By:

Lebaron, Simon;
Schneider, Claudia;
van Nues, Robert W;
Swiatkowska, Agata;
Walsh, Dietrich;
Böttcher, Bettina;
Granneman, Sander;
Watkins, Nicholas J;
Tollervey, David

Publication type:

Article

Regulation of GSK-3 Activity as A Shared Mechanism in Psychiatric Disorders.

Published in:

Klinik Psikofarmakoloji Bulteni, 2014, v. 24, n. 1, p. 97, doi. 10.5455/bcp.20140317063255

By:

Sahin, Ceren;
Unal, Gokhan;
Aricioglu, Feyza

Publication type:

Article

The plant LINC complex at the nuclear envelope.

Published in:

Chromosome Research, 2014, v. 22, n. 2, p. 241, doi. 10.1007/s10577-014-9419-7

By:

Tatout, Christophe;
Evans, David;
Vanrobays, Emmanuel;
Probst, Aline;
Graumann, Katja

Publication type:

Article

Accumulation of Ag and Cu in Amanita strobiliformis and characterization of its Cu and Ag uptake transporter genes As CTR2 and As CTR3.

Published in:

BioMetals, 2016, v. 29, n. 2, p. 249, doi. 10.1007/s10534-016-9912-x

By:

Beneš, Vojtěch;
Hložková, Kateřina;
Matěnová, Michaela;
Borovička, Jan;
Kotrba, Pavel

Publication type:

Article

Molecular characterization of a homolog of the ferric-uptake regulator, Fur, from the marine bacterium Marinobacter algicola DG893.

Published in:

BioMetals, 2015, v. 28, n. 1, p. 197, doi. 10.1007/s10534-014-9815-7

By:

Barker, Ryan;
Tisnado, Jerrell;
Lambert, Lisa;
Gärdes, Astrid;
Carrano, Mary;
Carrano, Paul;
Gillian, Christopher;
Carrano, Carl

Publication type:

Article

Improved prediction of residue flexibility by embedding optimized amino acid grouping into RSA-based linear models.

Published in:

Amino Acids, 2014, v. 46, n. 12, p. 2665, doi. 10.1007/s00726-014-1817-9

By:

Zhang, Hua;
Kurgan, Lukasz

Publication type:

Article

ProtDec-LTR2.0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3473, doi. 10.1093/bioinformatics/btx429

By:

Junjie Chen;
Mingyue Guo;
Shumin Li;
Bin Liu

Publication type:

Article

MoDMaps3D: an interactive webtool for the quantification and 3D visualization of interrelationships in a dataset of DNA sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3091, doi. 10.1093/bioinformatics/btx367

By:

Karamichalis, Rallis;
Kari, Lila

Publication type:

Article

SPOT-ligand 2: improving structure-based virtual screening by binding-homology search on an expanded structural template library.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1238, doi. 10.1093/bioinformatics/btw829

By:

Litfin, Thomas;
Yaoqi Zhou;
Yuedong Yang

Publication type:

Article

ORCAN--a web-based meta-server for real-time detection and functional annotation of orthologs.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1224, doi. 10.1093/bioinformatics/btw825

By:

Zielezinski, Andrzej;
Dziubek, Michal;
Sliski, Jan;
Karlowski, Wojciech M.

Publication type:

Article

Xenolog classification.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 640, doi. 10.1093/bioinformatics/btw686

By:

Darby, Charlotte A.;
Stolzer, Maureen;
Ropp, Patrick J.;
Barker, Daniel;
Durand, Dannie

Publication type:

Article

PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 444, doi. 10.1093/bioinformatics/btw638

By:

Janson, Giacomo;
Chengxin Zhang;
Prado, Maria Giulia;
Paiardini, Alessandro

Publication type:

Article

The OGCleaner: filtering false-positive homology clusters.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 125, doi. 10.1093/bioinformatics/btw571

By:

Fujimoto, M. Stanley;
Suvorov, Anton;
Jensen, Nicholas O.;
Clement, Mark J.;
Snell, Quinn;
Bybee, Seth M.

Publication type:

Article

Bayesian nonparametrics in protein remote homology search.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2744, doi. 10.1093/bioinformatics/btw213

By:

Margelevičius, Mindaugas

Publication type:

Article

Calculating and scoring high quality multiple flexible protein structure alignments.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2650, doi. 10.1093/bioinformatics/btw300

By:

Ritchie, David W.

Publication type:

Article

Benchmarking the next generation of homology inference tools.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2636, doi. 10.1093/bioinformatics/btw305

By:

Saripella, Ganapathi Varma;
Sonnhammer, Erik L. L.;
Forslund, Kristoffer

Publication type:

Article

XGSA: A statistical method for cross-species gene set analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i620, doi. 10.1093/bioinformatics/btw428

By:

Djordjevic, Djordje;
Kusumi, Kenro;
Ho, Joshua W. K.

Publication type:

Article

CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i332, doi. 10.1093/bioinformatics/btw271

By:

Xuefeng Cui;
Zhiwu Lu;
Sheng Wang;
Jing-Yan Wang, Jim;
Xin Gao

Publication type:

Article

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 3, p. 354, doi. 10.1093/bioinformatics/btv584

By:

Silva, Genivaldo Gueiros Z.;
Green, Kevin T.;
Dutilh, Bas E.;
Edwards, Robert A.

Publication type:

Article

Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.

Published in:

Bioinformatics, 2016, v. 32, n. 3, p. 338, doi. 10.1093/bioinformatics/btv538

By:

Kaushik, Swati;
Nair, Anu G.;
Mutt, Eshita;
Subramanian, Hari Prasanna;
Sowdhamini, Ramanathan

Publication type:

Article

LoopIng: a template-based tool for predicting the structure of protein loops.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3767, doi. 10.1093/bioinformatics/btv438

By:

Messih, Mario Abdel;
Lepore, Rosalba;
Tramontano, Anna

Publication type:

Article

Protein homology reveals new targets for bioactive small molecules.

Published in:

Bioinformatics, 2015, v. 31, n. 16, p. 2721, doi. 10.1093/bioinformatics/btv214

By:

Gfeller, David;
Zoete, Vincent

Publication type:

Article

A new method to improve network topological similarity search: applied to fold recognition.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2106, doi. 10.1093/bioinformatics/btv125

By:

Lhota, John;
Hauptman, Ruth;
Hart, Thomas;
Ng, Clara;
Lei Xie

Publication type:

Article

Reconstructing 16S rRNA genes in metagenomic data.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i35, doi. 10.1093/bioinformatics/btv231

By:

Cheng Yuan;
Jikai Lei;
Cole, James;
Yanni Sun

Publication type:

Article

Revisiting amino acid substitution matrices for identifying distantly related proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 317, doi. 10.1093/bioinformatics/btt694

By:

Yamada, Kazunori;
Tomii, Kentaro

Publication type:

Article

Infernal 1.1: 100-fold faster RNA homology searches.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2933, doi. 10.1093/bioinformatics/btt509

By:

Nawrocki, Eric P.;
Eddy, Sean R.

Publication type:

Article

Pclust: protein network visualization highlighting experimental data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2647, doi. 10.1093/bioinformatics/btt451

By:

Li, Wenlin;
Kinch, Lisa N.;
Grishin, Nick V.

Publication type:

Article

HOMECAT: consensus homologs mapping for interspecific knowledge transfer and functional genomic data integration.

Published in:

Bioinformatics, 2013, v. 29, n. 12, p. 1574, doi. 10.1093/bioinformatics/btt189

By:

Zorzan, Simone;
Lorenzetto, Erika;
Ettorre, Michele;
Pontelli, Valeria;
Laudanna, Carlo;
Buffelli, Mario

Publication type:

Article

Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins.

Published in:

Bioinformatics, 2012, v. 28, n. 24, p. 3203, doi. 10.1093/bioinformatics/bts608

By:

Ashkenazi, Shaul;
Snir, Rotem;
Ofran, Yanay

Publication type:

Article

FOLD-EM: automated fold recognition in medium- and low-resolution (4–15 Å) electron density maps.

Published in:

Bioinformatics, 2012, v. 28, n. 24, p. 3265, doi. 10.1093/bioinformatics/bts616

By:

Saha, Mitul;
Morais, Marc C.

Publication type:

Article

A novel structural position-specific scoring matrix for the prediction of protein secondary structures.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 32

By:

Li, Dapeng;
Li, Tonghua;
Cong, Peisheng;
Xiong, Wenwei;
Sun, Jiangming

Publication type:

Article

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2076, doi. 10.1093/bioinformatics/btr350

By:

Yang, Yuedong;
Faraggi, Eshel;
Zhao, Huiying;
Zhou, Yaoqi

Publication type:

Article

genBlastG: using BLAST searches to build homologous gene models.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2141, doi. 10.1093/bioinformatics/btr342

By:

She, Rong;
Chu, Jeffrey Shih-Chieh;
Uyar, Bora;
Wang, Jun;
Wang, Ke;
Chen, Nansheng

Publication type:

Article

On the homological classification of pomonoids by properties of cyclic S-posets.

Published in:

Semigroup Forum, 2013, v. 86, n. 3, p. 592, doi. 10.1007/s00233-013-9472-0

By:

Kilp, Mati

Publication type:

Article

Routes into activism in post-Soviet Russia: habitus, homology, hysteresis.

Published in:

Social Movement Studies, 2018, v. 17, n. 2, p. 159, doi. 10.1080/14742837.2018.1427054

By:

Ivanou, Aleh;
Flores, Ruben

Publication type:

Article

Targeting CARM1 in ovarian cancer with EZH2 and PARP inhibitors.

Published in:

Molecular & Cellular Oncology, 2020, v. 7, n. 4, p. 1, doi. 10.1080/23723556.2020.1760675

By:

Karakashev, Sergey;
Zhang, Rugang

Publication type:

Article

Epigenetic synthetic lethality in ovarian clear cell carcinoma: EZH2 and ARID1A mutations.

Published in:

Molecular & Cellular Oncology, 2016, v. 3, n. 1, p. 1, doi. 10.1080/23723556.2015.1032476

By:

Bitler, Benjamin G;
Aird, Katherine M;
Zhang, Rugang

Publication type:

Article

Conformational differences of poly( L-lactic acid) and poly( D,L-lactic acid) in dilute solutions.

Published in:

Doklady Chemistry, 2015, v. 465, n. 1, p. 261, doi. 10.1134/S0012500815110038

By:

Pavlov, G.;
Dommes, O.;
Aver'yanov, I.;
Kolbina, G.;
Okatova, O.;
Korzhikov, V.;
Dobrodumov, A.;
Tennikova, T.

Publication type:

Article

Intracellular calcium-dependent regulation of the sperm-specific calcium-activated potassium channel, hSlo3, by the BK<sub>Ca</sub> activator LDD175.

Published in:

Korean Journal of Physiology & Pharmacology, 2017, v. 21, n. 2, p. 241, doi. 10.4196/kjpp.2017.21.2.241

By:

Tharaka Darshana Wijerathne;
Jihyun Kim;
Dongki Yang;
Kyu Pil Lee

Publication type:

Article

Isolation and Characterisation of PRSV-P Resistance Genes in Carica and Vasconcellea.

Published in:

International Journal of Genomics, 2014, p. 1, doi. 10.1155/2014/145403

By:

Haireen, M. R. Razean;
Drew, R. A.

Publication type:

Article

Clinical significance of chromodomain helicase/ATPase DNA binding protein 1‑like and human mutL homolog 1 gene expression in cholangiocarcinoma.

Published in:

Oncology Letters, 2018, v. 16, n. 3, p. 2989, doi. 10.3892/ol.2018.9043

By:

Hua, JingwEN;
Li, Shiniao;
Huang, ChangwEN

Publication type:

Article

miR-106b targets DAB2 to promote hepatocellular carcinoma cell proliferation and metastasis.

Published in:

Oncology Letters, 2018, v. 16, n. 3, p. 3063, doi. 10.3892/ol.2018.8970

By:

Sun, Chunhui;
Yao, Xun;
Jiang, Qingyu;
Sun, Xiuyong

Publication type:

Article

Liver receptor homologue 1, a novel prognostic marker in colon cancer patients.

Published in:

Oncology Letters, 2018, v. 16, n. 3, p. 2833, doi. 10.3892/ol.2018.8988

By:

Wu, Cong;
FENg, Jin;
Li, Ling;
Wu, Yugang;
Xie, Haibin;
Yin, Yong;
Ye, Jing;
Li, Zhong

Publication type:

Article

High RhoA expression at the tumor front in clinically localized prostate cancer and association with poor tumor differentiation.

Published in:

Oncology Letters, 2016, v. 11, n. 2, p. 1375, doi. 10.3892/ol.2015.4070

By:

WEIHUA CHEN;
DELONGCHAMPS, NICOLAS BARRY;
KAILI MAO;
BEUVON, FRÉDÉRIC;
PEYROMAURE, MICHAËL;
ZHONGMIN LIU;
ANH TUAN DINH-XUAN

Publication type:

Article

RhoC is essential in TGF-β1 induced epithelial-mesenchymal transition in cervical cancer cells.

Published in:

Oncology Letters, 2015, v. 10, n. 2, p. 985, doi. 10.3892/ol.2015.3287

By:

XIAOQI HE;
YING QIAN;
HUILAN CAI;
SHOUHUA YANG;
JING CAI;
ZEHUA WANG

Publication type:

Article