Works matching DE "HIGH performance computing"

Results: 2515

ProProtein: A platform for fully automated identification of 3D structure fluctuations in MD simulation trajectories.

Published in:

PLoS ONE, 2025, v. 20, n. 8, p. 1, doi. 10.1371/journal.pone.0329314

By:

Mularski, Krzysztof;
Makalowski, Dawid;
Okonek, Marcin;
Glebowska, Daria;
Swiercz, Mateusz;
Kamel, Karol;
Blazewicz, Jacek;
Antczak, Maciej;
Swiercz, Aleksandra

Publication type:

Article

Dynamic Metadata Prefetching and Data Placement Algorithms for High-Performance Wide-Area Applications.

Published in:

Computers, Materials & Continua, 2025, v. 84, n. 3, p. 4773, doi. 10.32604/cmc.2025.065090

By:

Wei, Bing;
Li, Yubin;
Wu, Yi;
Zhong, Ming;
Luo, Ning

Publication type:

Article

Improving LAMMPS performance for molecular dynamic simulation on large-scale HPC systems.

Published in:

Computer Journal, 2025, v. 68, n. 6, p. 706, doi. 10.1093/comjnl/bxae143

By:

Qi, Du;
Wang, Feng;
Huang, Hui;
Chen, Jinlin

Publication type:

Article

asQ: parallel-in-time finite element simulations using ParaDiag for geoscientific models and beyond.

Published in:

Geoscientific Model Development, 2025, v. 18, n. 14, p. 4535, doi. 10.5194/gmd-18-4535-2025

By:

Hope-Collins, Joshua;
Hamdan, Abdalaziz;
Bauer, Werner;
Mitchell, Lawrence;
Cotter, Colin

Publication type:

Article

A biased random-key genetic algorithm for the minimum quasi-clique partitioning problem.

Published in:

Annals of Operations Research, 2025, v. 351, n. 1, p. 575, doi. 10.1007/s10479-023-05609-7

By:

Melo, Rafael A.;
Ribeiro, Celso C.;
Riveaux, Jose A.

Publication type:

Article

F-DATA: A Fugaku Workload Dataset for Job-centric Predictive Modelling in HPC Systems.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05633-1

By:

Antici, Francesco;
Bartolini, Andrea;
Domke, Jens;
Kiziltan, Zeynep;
Yamamoto, Keiji

Publication type:

Article

A Spatially Correlated Competing Risks Time-to-Event Model for Supercomputer GPU Failure Data.

Published in:

Technometrics, 2025, v. 67, n. 3, p. 531, doi. 10.1080/00401706.2025.2475783

By:

Min, Jie;
Hong, Yili;
Meeker, William Q.;
Ostrouchov, George

Publication type:

Article

Energy and Scientific Workflows: Smart Scheduling and Execution.

Published in:

Journal of Information Science & Engineering, 2024, v. 40, n. 5, p. 957, doi. 10.6688/JISE.202409_40(5).0002

By:

WARADE, MEHUL;
LEE, KEVIN;
RANAWEERA, CHATHURIKA;
SCHNEIDER, JEAN-GUY

Publication type:

Article

Interactive Robotic Testbed for Performance Assessment of Machine Learning based Computer Vision Techniques.

Published in:

Journal of Information Science & Engineering, 2020, v. 36, n. 5, p. 1055, doi. 10.6688/JISE.202009_36(5).0008

By:

P. B., NITHIN;
R., ALBERT FRANCIS;
CHEMMANAM, AJAI JOHN;
JOSE, BIJOY A.;
MATHEW, JIMSON

Publication type:

Article

An Asynchronous High-Performance Approximate Adder with Low-Cost Error Correction.

Published in:

Journal of Information Science & Engineering, 2020, v. 36, n. 1, p. 1, doi. 10.6688/JISE.202001_36(1).0001

By:

KODALI, TARAK K.;
YILIN ZHANG;
JOHN, EUGENE;
WEI-MING LIN

Publication type:

Article

An Efficient Two-Level Hierarchy Job Scheduling and Task Dispatching Strategy for Cluster Rendering System.

Published in:

Journal of Information Science & Engineering, 2017, v. 33, n. 2, p. 463

By:

QIAN LI;
WEI-GUO WU;
ZE-YU SUN;
JIAN-HANG HUANG

Publication type:

Article

A Reliability Analysis for Successful Execution of Parallel DAG Tasks.

Published in:

Journal of Information Science & Engineering, 2017, v. 33, n. 1, p. 81

By:

KE-KUN HU;
GUO-SUN ZENG;
WEN-JUAN LIU;
WEI WANG

Publication type:

Article

GPU-Based High Performance Password Recovery Technique for Hash Functions.

Published in:

Journal of Information Science & Engineering, 2016, v. 32, n. 1, p. 97

By:

WEIDONG QIU;
ZHENG GONG;
YIDONG GUO;
BOZHONG LIU;
XIAOMING TANG;
YUHENG YUAN

Publication type:

Article

Design of a Lightweight TCP/IP Protocol Stack with an Event-Driven Scheduler.

Published in:

Journal of Information Science & Engineering, 2012, v. 28, n. 6, p. 1059

By:

JOONHYOUK JANG;
JINMAN JUNG;
YOOKUN CHO;
SANGHOON CHOI;
SHIN, SUNG Y.

Publication type:

Article

An Optimal Round-Robin Arbiter Design for NoC.

Published in:

Journal of Information Science & Engineering, 2010, v. 26, n. 6, p. 2047

By:

JER-MIN JOU;
YUN-LUNG LEE

Publication type:

Article

Using a Performance-based Skeleton to Implement Divisible Load Applications on Grid Computing Environments.

Published in:

Journal of Information Science & Engineering, 2009, v. 25, n. 1, p. 59

By:

WEN-CHUNG SHIH;
CHAO-TUNG YANG;
SHIAN-SHYONG TSENG

Publication type:

Article

On Message Sequences for Incremental Network Computing.

Published in:

Journal of Information Science & Engineering, 2008, v. 24, n. 4, p. 1023

By:

CHO-CHIN LIN

Publication type:

Article

Computational analysis of human upper airway aerodynamics.

Published in:

Medical & Biological Engineering & Computing, 2023, v. 61, n. 2, p. 541, doi. 10.1007/s11517-022-02716-8

By:

Hebbink, Rutger H.J.;
Wessels, Bas J.;
Hagmeijer, Rob;
Jain, Kartik

Publication type:

Article

A memory optimization method combined with adaptive time-step method for cardiac cell simulation based on multi-GPU.

Published in:

Medical & Biological Engineering & Computing, 2020, v. 58, n. 11, p. 2821, doi. 10.1007/s11517-020-02255-0

By:

Luo, Ching-Hsing;
Ye, Haiyi;
Chen, Xingji

Publication type:

Article

Numerical analysis of the flow field in the lacunar-canalicular system under different magnitudes of gravity.

Published in:

2020

By:

Zhao, Sen;
Liu, Haiying;
Li, Yonghe;
Song, Yang;
Wang, Wei;
Zhang, Chunqiu

Publication type:

journal article

CFD simulations for paper-based DNA amplification reaction (LAMP) of Mycobacterium tuberculosis-point-of-care diagnostic perspective.

Published in:

2020

By:

Das, Debayan;
Panigrahi, P.K.

Publication type:

journal article

Combination of "quadratic adaptive algorithm" and "hybrid operator splitting" or uniformization algorithms for stability against acceleration in the Markov model of sodium ion channels in the ventricular cell model.

Published in:

2019

By:

Chen, Xing-Ji;
Luo, Ching-Hsing;
Chen, Min-Hung;
Zhou, Xiang

Publication type:

journal article

Automatic directional analysis of cell fluorescence images and morphological modeling of microfilaments.

Published in:

2019

By:

Zhou, Yue;
Li, Huiqi;
Zhang, Wanjun;
Xu, Jiayi;
Li, Xiaojun;
Ji, Baohua

Publication type:

journal article

The numerical study on the effects of cardiac function on the aortic oxygen distribution.

Published in:

2018

By:

Zhang, Qi;
Gao, Bin;
Chang, Yu

Publication type:

journal article

Intervertebral disc degeneration: an experimental and numerical study using a rabbit model.

Published in:

2018

By:

Calvo-Echenique, Andrea;
Cegoñino, José;
Correa-Martín, Laura;
Bances, Luciano;
Palomar, Amaya Pérez-del

Publication type:

journal article

The effect of using a dielectric matching medium in focused microwave radiometry: an anatomically detailed head model study.

Published in:

2018

By:

Koutsoupidou, Maria;
Groumpas, Evangelos;
Karanasiou, Irene S.;
Christopoulou, Maria;
Nikita, Konstantina;
Uzunoglu, Nikolaos

Publication type:

journal article

Numerical analysis of intracochlear mechanical auditory stimulation using piezoelectric bending actuators.

Published in:

2018

By:

Schurzig, Daniel;
Schwarzendahl, Sebastian;
Wallaschek, Jörg;
van Drunen, Wouter J.;
Rau, Thomas S.;
Lenarz, Thomas;
Majdani, Omid

Publication type:

journal article

Mathematical modeling of extracorporeal CO<sub>2</sub> removal therapy : A validation carried out on ten pigs.

Published in:

2018

By:

Habran, Simon;
Desaive, Thomas;
Morimont, Philippe;
Lambermont, Bernard;
Dauby, Pierre

Publication type:

journal article

Numerical modeling of percutaneous auricular vagus nerve stimulation: a realistic 3D model to evaluate sensitivity of neural activation to electrode position.

Published in:

2017

By:

Samoudi, Amine;
Kampusch, Stefan;
Tanghe, Emmeric;
Széles, Jozsef;
Martens, Luc;
Kaniusas, Eugenijus;
Joseph, Wout;
Samoudi, Amine M;
Széles, Jozsef C

Publication type:

journal article

Modelling and numerical simulation of the in vivo mechanical response of the ascending aortic aneurysm in Marfan syndrome.

Published in:

2017

By:

García-Herrera, Claudio;
Celentano, Diego;
Herrera, Emilio;
García-Herrera, Claudio M;
Celentano, Diego J;
Herrera, Emilio A

Publication type:

journal article

Computational fluid dynamics-based study of possibility of generating pulsatile blood flow via a continuous-flow VAD.

Published in:

2017

By:

Nammakie, Erfan;
Niroomand-Oscuii, Hanieh;
Koochaki, Mojtaba;
Ghalichi, Farzan

Publication type:

journal article

Numerical simulation on the effects of drug-eluting stents with different bending angles on hemodynamics and drug distribution.

Published in:

2016

By:

Chen, Yu;
Xiong, Yan;
Jiang, Wentao;
Wong, Man;
Yan, Fei;
Wang, Qingyuan;
Fan, Yubo;
Wong, Man Sang

Publication type:

journal article

Biomechanical behavior of plantar fat pad in healthy and degenerative foot conditions.

Published in:

2016

By:

Fontanella, Chiara;
Nalesso, Federica;
Carniel, Emanuele;
Natali, Arturo;
Fontanella, Chiara Giulia;
Carniel, Emanuele Luigi;
Natali, Arturo N

Publication type:

journal article

Using a Computational Grid for Geographic Information Analysis: A Reconnaissance.

Published in:

Professional Geographer, 2005, v. 57, n. 3, p. 365, doi. 10.1111/j.0033-0124.2005.00484.x

By:

Armstrong, MarcP.;
Kathryn Cowles, Mary;
Wang, Shaowen

Publication type:

Article

DECISION SUPPORT FOR SUPERCOMPUTER ACQUISITION.

Published in:

Operations Research, 1991, v. 39, n. 3, p. 366, doi. 10.1287/opre.39.3.366

By:

Burd, Stephen D.;
Kassicieh, Suleiman K.

Publication type:

Article

Effect of twist ratio on the thermal-hydraulic behavior of an aluminum oxide/cupric oxide nanofluid heat exchanger.

Published in:

Journal of Thermal Analysis & Calorimetry, 2024, v. 149, n. 9, p. 4103, doi. 10.1007/s10973-024-12945-8

By:

Kumar, Ravinder;
kumar, Parmanand

Publication type:

Article

Performance of ejector refrigeration cycle based on solar energy working with various refrigerants.

Published in:

Journal of Thermal Analysis & Calorimetry, 2020, v. 141, n. 1, p. 301, doi. 10.1007/s10973-020-09319-1

By:

Shovon, Md Khairul Bashar;
Raman, Senthil Kumar;
Suryan, Abhilash;
Kim, Tae Ho;
Kim, Heuy Dong

Publication type:

Article

What can digitisation do for formulated product innovation and development?

Published in:

Polymer International, 2021, v. 70, n. 3, p. 248, doi. 10.1002/pi.6056

By:

McDonagh, James L;
Swope, William C;
Anderson, Richard L;
Johnston, Michael A;
Bray, David J

Publication type:

Article

Disciplinary and institutional shifts: decomposing deviations in the country-level proportions of conference papers in Scopus.

Published in:

Scientometrics, 2024, v. 129, n. 3, p. 1697, doi. 10.1007/s11192-024-04943-2

By:

Kosyakov, Denis;
Guskov, Andrey

Publication type:

Article

Energy Conservation in Cooling Systems at Metallurgical Plants.

Published in:

Metallurgist, 2016, v. 59, n. 9/10, p. 882, doi. 10.1007/s11015-016-0188-8

By:

Shmakov, A.;
Modorskii, V.

Publication type:

Article

COBREXA.jl: constraint-based reconstruction and exascale analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 4, p. 1171, doi. 10.1093/bioinformatics/btab782

By:

Kratochvíl, Miroslav;
Heirendt, Laurent;
Wilken, St Elmo;
Pusa, Taneli;
Arreckx, Sylvain;
Noronha, Alberto;
Aalst, Marvin van;
Satagopam, Venkata P;
Ebenhöh, Oliver;
Schneider, Reinhard;
Trefois, Christophe;
Gu, Wei

Publication type:

Article

Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG.

Published in:

Bioinformatics, 2021, v. 37, n. 22, p. 4056, doi. 10.1093/bioinformatics/btab399

By:

Hübner, Lukas;
Kozlov, Alexey M;
Hespe, Demian;
Sanders, Peter;
Stamatakis, Alexandros

Publication type:

Article

clustermq enables efficient parallelization of genomic analyses.

Published in:

Bioinformatics, 2019, v. 35, n. 21, p. 4493, doi. 10.1093/bioinformatics/btz284

By:

Schubert, Michael

Publication type:

Article

SPIM workflow manager for HPC.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3875, doi. 10.1093/bioinformatics/btz140

By:

Kožusznik, Jan;
Bainar, Petr;
Klímová, Jana;
Krumnikl, Michal;
Moravec, Pavel;
Svatoň, Václav;
Tomančák, Pavel

Publication type:

Article

SPECTRE: a suite of phylogenetic tools for reticulate evolution.

Published in:

Bioinformatics, 2018, v. 34, n. 6, p. 1056, doi. 10.1093/bioinformatics/btx740

By:

Bastkowski, Sarah;
Mapleson, Daniel;
Spillner, Andreas;
Wu, Taoyang;
Balvočiūtė, Monika;
Moulton, Vincent

Publication type:

Article

EMHP: an accurate automated hole masking algorithm for single-particle cryo-EM image processing.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3824, doi. 10.1093/bioinformatics/btx500

By:

Berndsen, Zachary;
Bowman, Charles;
Haerin Jang;
Ward, Andrew B.

Publication type:

Article

BioContainers: an open-source and community-driven framework for software standardization.

Published in:

Bioinformatics, 2017, v. 33, n. 16, p. 2580, doi. 10.1093/bioinformatics/btx192

By:

Leprevost, Felipe da Veiga;
Grüning, Björn A.;
Aflitos, Saulo Alves;
Röst, Hannes L.;
Uszkoreit, Julian;
Barsnes, Harald;
Vaudel, Marc;
Moreno, Pablo;
Gatto, Laurent;
Weber, Jonas;
Mingze Bai;
Jimenez, Rafael C.;
Sachsenberg, Timo;
Pfeuffer, Julianus;
Alvarez, Roberto Vera;
Griss, Johannes;
Nesvizhskii, Alexey I.;
Perez-Riverol, Yasset

Publication type:

Article

MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 10, p. 1486, doi. 10.1093/bioinformatics/btv753

By:

Murillo, Gabriel H.;
Na You;
Xiaoquan Su;
Wei Cui;
Reilly, Muredach P.;
Mingyao Li;
Kang Ning;
Xinping Cui

Publication type:

Article

An automated workflow for parallel processing of large multiview SPIM recordings.

Published in:

Bioinformatics, 2016, v. 32, n. 7, p. 1112, doi. 10.1093/bioinformatics/btv706

By:

Schmied, Christopher;
Steinbach, Peter;
Pietzsch, Tobias;
Preibisch, Stephan;
Tomancak, Pavel

Publication type:

Article

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3396

By:

Tárraga, Joaquín;
Arnau, Vicente;
Martínez, Héctor;
Moreno, Raul;
Cazorla, Diego;
Salavert-Torres, José;
Blanquer-Espert, Ignacio;
Dopazo, Joaquín;
Medina, Ignacio

Publication type:

Article