Works matching DE "GENOMICS"

Results: 5000

Unique growth and morphology properties of Clade 5 Clostridioides difficile strains revealed by single-cell time-lapse microscopy.

Published in:

PLoS Pathogens, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.ppat.1013155

By:

Ribis, John W.;
Nieto, César;
DiBenedetto, Nicholas V.;
Mehra, Anchal;
Kuhn, Pola;
Dong, Qiwen;
Nagawa, Irene;
El Meouche, Imane;
Aldridge, Bree B.;
Dunlop, Mary J.;
Tamayo, Rita;
Singh, Abhyudai;
Shen, Aimee

Publication type:

Article

Orchid phylogenetics and evolution: history, current status and prospects Free.

Published in:

Annals of Botany, 2025, v. 135, n. 5, p. 805, doi. 10.1093/aob/mcae202

By:

Freudenstein, John V

Publication type:

Article

Scenarios for the emergence of new microRNA genes in the plant Arabidopsis halleri.

Published in:

Plant & Cell Physiology, 2025, v. 66, n. 4, p. 542, doi. 10.1093/pcp/pcaf004

By:

Pavan, Flavia;
Lacoste, Eléanore;
Castric, Vincent;
Legrand, Sylvain

Publication type:

Article

Recent Advances in Adaptation Genomics in Fumarole Fields: An Overlooked Extreme Environment.

Published in:

Plant & Cell Physiology, 2025, v. 66, n. 4, p. 496, doi. 10.1093/pcp/pcae122

By:

Nagasawa, Koki;
Setoguchi, Hiroaki;
Sakaguchi, Shota

Publication type:

Article

Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleriOpen Access.

Published in:

Plant & Cell Physiology, 2025, v. 66, n. 4, p. 529, doi. 10.1093/pcp/pcae113

By:

Suda, Ryo A;
Kubota, Shosei;
Kumar, Vinod;
Castric, Vincent;
Krämer, Ute;
Morinaga, Shin-Ichi;
Tsuchimatsu, Takashi

Publication type:

Article

Harnessing omics data for drug discovery and development in ovarian aging.

Published in:

Human Reproduction Update, 2025, v. 31, n. 3, p. 240, doi. 10.1093/humupd/dmaf002

By:

Zhang, Fengyu;
Zhu, Ming;
Chen, Yi;
Wang, Guiquan;
Yang, Haiyan;
Lu, Xinmei;
Li, Yan;
Chang, Hsun-Ming;
Wu, Yang;
Ma, Yunlong;
Yuan, Shuai;
Zhu, Wencheng;
Dong, Xi;
Zhao, Yue;
Yu, Yang;
Wang, Jia;
Mu, Liangshan

Publication type:

Article

Mycobacteroides abscessus subspecies: a comparative genomic analysis reveals unique metabolic activities and drug resistance patterns.

Published in:

BMC Microbiology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12866-025-04010-7

By:

Wang, Xiaoyu;
Dai, Yongdong;
Wang, Xiao;
Li, Lingfei;
Feng, Yanhai;
Liu, Shunying;
Kou, Zhenyu;
Wang, Liang;
Wang, Fangjie;
Chen, Yaokai;
Lei, Xia

Publication type:

Article

Genomic analysis of carbapenem-resistant Klebsiella pneumoniae blood isolates from nationwide surveillance in South Korea.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1562222

By:

On, Younggwon;
Kim, Jung Wook;
Lee, Juyoung;
Yoo, Jung Sik

Publication type:

Article

Genetic Investigation of Inherited Variants in a Multiplex Autism Spectrum Disorder (ASD) Family Using Whole-Genome Sequencing (WGS).

Published in:

Iranian Journal of Public Health, 2025, v. 54, n. 5, p. 1087, doi. 10.18502/ijph.v54i5.18643

By:

Gholizadeh, Mehdi Agha;
Behjati, Farkhondeh;
Garshasbi, Masoud

Publication type:

Article

Optimizing Treatment: The Role of Pharmacology, Genomics, and AI in Improving Patient Outcomes.

Published in:

Drug Development Research, 2025, v. 86, n. 3, p. 1, doi. 10.1002/ddr.70093

By:

Ahmad, Fazil

Publication type:

Article

Bidirectional associations between endometriosis and Sjögren's syndrome in the era of multi‐omics.

Published in:

Acta Obstetricia et Gynecologica Scandinavica, 2025, v. 104, n. 6, p. 1220, doi. 10.1111/aogs.15089

By:

Wang, Li‐Tzu;
Sasamoto, Naoko;
Einarsson, Jon Ivar;
Laufer, Marc R.;
Ma, Kevin Sheng‐Kai

Publication type:

Article

In This Issue.

Published in:: Clinical Pharmacology & Therapeutics, 2025, v. 117, n. 6, p. 1479, doi. 10.1002/cpt.3667
Publication type:: Article

SLCO1B1 Functional Variants, Bilirubin, Statin‐Induced Myotoxicity, and Recent Sub‐Saharan African Ancestry: A Precision Medicine Health Equity Study.

Published in:

Clinical Pharmacology & Therapeutics, 2025, v. 117, n. 6, p. 1696, doi. 10.1002/cpt.3624

By:

Haldar, Tanushree;
Kvale, Mark;
Yang, Jia;
Douglas, Michael P.;
Coyote‐Maetas, Willow;
Kachuri, Linda;
Witte, John S.;
Iribarren, Carlos;
Medina, Marisa W.;
Krauss, Ronald M.;
Yee, Sook Wah;
Oni‐Orisan, Akinyemi

Publication type:

Article

Implementing Pharmacogenomics Clinical Decision Support: A Comprehensive Tutorial on how to Integrate the Epic Genomics Module.

Published in:

Clinical Pharmacology & Therapeutics, 2025, v. 117, n. 6, p. 1670, doi. 10.1002/cpt.3599

By:

Hall, Bradley T.;
Eken, Eda;
Cavallari, Larisa H.;
Duarte, Julio D.;
Wiisanen, Kristin W.;
Cicali, Emily J.;
Nguyen, Khoa A.

Publication type:

Article

A National Study Among Diverse US Populations of Exposure to Prescription Medications with Evidence‐Based Pharmacogenomic Information.

Published in:

Clinical Pharmacology & Therapeutics, 2025, v. 117, n. 6, p. 1793, doi. 10.1002/cpt.3617

By:

Saulsberry, Loren;
Jameson, Jacob C.;
Gibbons, Robert D.;
Dolan, M. Eileen;
Olopade, Olufunmilayo I.;
O'Donnell, Peter H.

Publication type:

Article

Reimagining the Therapeutic Approach for Anaplastic Thyroid Cancer: The Roadmap to a Cure.

Published in:

Thyroid, 2025, v. 35, n. 5, p. 462, doi. 10.1089/thy.2025.0044

By:

Cabanillas, Maria E.;
Akhave, Neal;
Banuchi, Victoria;
Busaidy, Naifa;
Dadu, Ramona;
Ferrarotto, Renata;
Gunn, Gary B.;
Hamidi, Sarah;
Hofmann, Marie-Claude;
Hosseini, S. Mohsen;
Iyer, Priyanka C.;
Lai, Stephen Y.;
Lee, Anna;
Maniakas, Anastasios;
Ning, Matthew S.;
Spiotto, Michael;
Wang, Jennifer R.;
Williams, Michelle D.;
Zafereo, Mark

Publication type:

Article

TCGADownloadHelper: simplifying TCGA data extraction and preprocessing.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1569290

By:

Baumann, Alexandra Anke;
Wolkenhauer, Olaf;
Wolfien, Markus

Publication type:

Article

Evaluation of genotoxicity and physicochemical variations of Eichhornia crassipes (Mart.) Solms exposed to paper-mill-contaminated wastewater.

Published in:

Environmental Monitoring & Assessment, 2025, v. 197, n. 5, p. 1, doi. 10.1007/s10661-025-14015-4

By:

Shah, Harma;
Awan, Muhammad U. F.;
Mehmood, Zahid;
Sana, Noor;
Abbas, Wasim;
Ahmad, Adeel;
Qasim, Abdullah;
Gul, Annum;
Hasnain, Ali;
Yang, Hsi-Hsien

Publication type:

Article

Race, Ethnicity, and Tumor Genomic Testing in Prostate Cancer.

Published in:

2025

By:

Ozay, Zeynep Irem;
Agarwal, Neeraj

Publication type:

Opinion

Genome wide locus-specific ancestry analysis revealed adaptive admixtures in crossbred cattle of India.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01971-7

By:

Goli, Rangasai Chandra;
Chishi, Kiyevi G.;
Mahar, Karan;
Ganguly, Indrajit;
Singh, Sanjeev;
Dixit, S. P.;
Sruthi, Oguru Sai;
Choudhary, Sonu;
Diwakar, Vikas;
Rathi, Pallavi;
Chinnareddyvari, Chandana Sree;
Dige, Mahesh;
Metta, Muralidhar;
Kumar, Amit;
Aderao, Ganesh N.;
Sukhija, Nidhi;
Kanaka, K. K.

Publication type:

Article

Genetic Diversity in KMT2A‐r and KMT2A‐Wt Groups: Assessing the Prognostic Value of Markers in BCP‐ALL Among Infants.

Published in:

International Journal of Laboratory Hematology, 2025, v. 47, n. 3, p. 472, doi. 10.1111/ijlh.14442

By:

Ilyasova, Karina;
Zerkalenkova, Elena;
Soldatkina, Olga;
Kazakova, Anna;
Myakova, Natalya;
Roumiantseva, Julia;
Fomynih, Veronica;
Popov, Alexander;
Tsaur, Grigory;
Olshanskaya, Yulia;
Maschan, Michael

Publication type:

Article

T‐Cell Prolymphocytic Leukemia With PDGFRB Rearrangement in the Setting of Neurofibromatosis Type 1.

Published in:

2025

By:

Zhao, Yue;
Petersen, Philip;
Siddiqi, Imran;
Wang, Endi

Publication type:

Letter to the Editor

AlfaPang: alignment free algorithm for pangenome graph construction.

Published in:

Algorithms for Molecular Biology, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13015-025-00277-7

By:

Cicherski, Adam;
Lisiecka, Anna;
Dojer, Norbert

Publication type:

Article

PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf102

By:

Leoni, Gabriele;
Petrillo, Mauro;
Ruiz-Serra, Victoria;
Querci, Maddalena;
Coecke, Sandra;
Wiesenthal, Tobias

Publication type:

Article

PROLONG: penalized regression for outcome guided longitudinal omics analysis with network and group constraints Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf099

By:

Broll, Steven;
Basu, Sumanta;
Lee, Myung Hee;
Wells, Martin T

Publication type:

Article

Genome-wide identification, tissue expression pattern, and salt stress response analysis of the NAC gene family in Thinopyrum elongatum.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06696-3

By:

Sun, Jilin;
Cui, Xiaokuo;
Zhang, Jiaqi;
Meng, Fansen;
Li, Jiangong;
Zhou, Shenghui;
Wu, Changai;
Zhou, Peng;
Sun, Silong;
Han, Long

Publication type:

Article

Advancing precision oncology with AI-powered genomic analysis.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1591696

By:

Srivastava, Ruby

Publication type:

Article

مالتیپل اسکلروزیس و مسیر سیگنال دهی MAPK یک مطالعه مبتنی بر ریز آرایه.

Published in:

Pars Journal of Medical Sciences, 2025, v. 22, n. 4, p. 72

By:

میرزا علی مفضل جه
امیررضا دهقان;
اباذر روستازاده

Publication type:

Article

Genomic Analysis of Terbinafine Resistance in Microsporum canis Isolated from a Feline Dermatophytosis.

Published in:

Medical Mycology Journal, 2025, v. 66, n. 1, p. 17, doi. 10.3314/mmj.24-00024

By:

Nojol, Honoka;
Watanabet, Akira;
Makimura, Koichi;
Kano, Rui

Publication type:

Article

Emergence of an XDR Klebsiella pneumoniae ST5491 strain co-harboring NDM-5, MCR-1.1, tmexCD1-toprJ1, and a novel plasmid carrying CTX-M-15.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1581851

By:

Fang, Yinfei;
Li, Xiangchen;
Wu, Zhaoxia;
Fang, Yongjin;
Wang, Yeping;
Li, Xiaobing;
Bu, Lihong;
Chen, Keqiang;
Shen, Kai;
Ma, Yongjun;
Wu, Mingjuan

Publication type:

Article

In-vitro, in-vivo and Whole Genome-Based Probe into Probiotic Potential of Weissella viridescens PC-45 against Salmonella Gallinarum.

Published in:

Pakistan Veterinary Journal, 2025, v. 45, n. 1, p. 367, doi. 10.29261/pakvetj/2024.306

By:

Mehmood, Adnan;
Nawaz, M.;
Rabbani, Masood;
Mushtaq, M. Hassan

Publication type:

Article

Genetic characterization and pathogenicity of two recombinant PRRSV-2 strains from lineages 1, 3, 5, and 8 emerged in China.

Published in:

BMC Veterinary Research, 2025, v. 21, n. 1, p. 1, doi. 10.1186/s12917-025-04779-9

By:

Wei, Chunhua;
Liu, Chen;
Chen, Guangsong;
Yang, Yuan;
Li, Jiarui;
Dan, Huijuan;
Dai, Ailing;
Huang, Cuiqin;
Luo, Manlin;
Liu, Jiankui

Publication type:

Article

A NOVL DETECTION OF BACTERIAL COMMUNITY IN VAGINA BY METAGENOMIC AND MOLECULAR DETECTION OF A NEW LOCAL STRAIN OF MYCOPLASMA GENITALIUM.

Published in:

Obstetrics & Gynaecology Forum, 2024, v. 34, n. 3, p. 1781

By:

Mahmood, Sarah Badri;
Alrawi, Amera Mahmood

Publication type:

Article

Thermally adapted Escherichia coli keeps transcriptomic response during temperature upshift exposure.

Published in:

Applied Microbiology & Biotechnology, 2025, v. 109, n. 1, p. 1, doi. 10.1007/s00253-025-13495-1

By:

Pérez-Morales, Gilberto;
Martínez-Conde, Karla V.;
Caspeta, Luis;
Merino, Enrique;
Cevallos, Miguel A.;
Gosset, Guillermo;
Martinez, Alfredo

Publication type:

Article

Molecular Profiling of Nasopharyngeal Carcinoma Using the AACR Project GENIE Repository.

Published in:

Cancers, 2025, v. 17, n. 9, p. 1544, doi. 10.3390/cancers17091544

By:

Hsia, Beau;
Sure, Asritha;
Dongre, Roshan;
Jo, Nicolas;
Kuzniar, Julia;
Bitar, Gabriel;
Alshaka, Saif A.;
Kim, Jeeho D.;
Valencia-Sanchez, Bastien A.;
Brandel, Michael G.;
Sato, Mariko;
Crawford, John Ross;
Levy, Michael L.;
Polster, Sean P.;
Patel, Vijay A.

Publication type:

Article

Emerging Trends in Global Cancer Epidemiology.

Published in:

2025

By:

Raza, Syed Ahsan

Publication type:

Editorial

Integrated Genomic Analysis of Lung Squamous Cell Carcinoma Subtypes Characterized by Immunogenic Cell Death-Relevant Gene Signature.

Published in:

OncoTargets & Therapy, 2025, v. 18, p. 521, doi. 10.2147/OTT.S503419

By:

Wang, Yuhan;
Wang, Shuang;
Ding, Ran;
Zhang, Zequn;
Kong, Jing;
Xie, Tian;
Xu, Bin;
Fu, Liming;
Zhang, Erli

Publication type:

Article

Complete Chloroplast Genome Analysis of Casearia kurzii : Gene Loss at the IR Boundary and Monophyletic Evolution Within Casearia.

Published in:

Plants (2223-7747), 2025, v. 14, n. 9, p. 1356, doi. 10.3390/plants14091356

By:

Yan, Kan;
Li, Wandi;
Sun, Chao;
Lu, Xin;
Zhou, Xueqiong;
Wang, Youyou;
Tian, Yongqiang

Publication type:

Article

Genomic Characterization and Functional Evaluation of Eurotium cristatum EC-520: Impacts on Colon Barrier Integrity, Gut Microbiota, and Metabolite Profile in Rats.

Published in:

Foods, 2025, v. 14, n. 9, p. 1569, doi. 10.3390/foods14091569

By:

Wu, Huini;
Wang, Xiuping;
Kong, Xiangrui;
Shan, Ruiyang;
Peng, Song;
Zhao, Mengshi;
Chen, Changsong;
Yu, Wenquan;
Li, Zhaolong

Publication type:

Article

Genomic Analysis of Two Histamine-Producing Strains Isolated from Yellowfin Tuna.

Published in:

Foods, 2025, v. 14, n. 9, p. 1532, doi. 10.3390/foods14091532

By:

Wang, Yazhe;
Wang, Di;
Chen, Shengjun;
Yu, Gang;
Ma, Zhenhua;
Wei, Ya;
Li, Chunsheng;
Wang, Yueqi;
Shen, Chaoming;
Zhao, Yongqiang

Publication type:

Article

Chromosome-level genome assembly reveals adaptive evolution of the invasive Amazon sailfin catfish (Pterygoplichthys pardalis).

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08029-4

By:

Lv, Yunyun;
Li, Yanping;
Fang, Miao;
Liu, Yi;
Wang, Yuanyuan;
Yang, Yexin;
Zou, Yuanchao;
Shi, Qiong;
Mu, Xidong

Publication type:

Article

Whole genome analysis and biocontrol potential of endophytic Bacillus cereus EMS1 against Fusarium wilt in banana.

Published in:

World Journal of Microbiology & Biotechnology, 2025, v. 41, n. 4, p. 1, doi. 10.1007/s11274-025-04326-6

By:

Singh, Shilpi;
Rai, Piyush Kant;
Khan, Azmat Ali;
Fatima, Sabiha;
Choure, Kamlesh;
Joo, Jeong Chan;
Pandey, Ashutosh

Publication type:

Article

Comparative Genotyping of Malaysian Clinical Isolates of Streptococcus pneumoniae by Multilocus Sequence Typing and Multilocus Variable-Number Tandem Repeat Analysis.

Published in:

Malaysian Journal of Medical Sciences, 2025, v. 32, n. 1, p. 69, doi. 10.21315/mjms-09-2024-677

By:

ABDUL RAHMAN, Nurul Asyikin;
MUTHANNA, AbdulRahman;
Mohd DESA, Mohd Nasir;
DZARALY, Nurul Diana;
HAZMAN, Hazmin;
SULAIMAN, Nurshahira;
MOHAMAD, Norfazlina;
Meor YAHAYA, Maitasha Alia;
Jamil AL-OBAIDI, Mazen M.;
MOHD TAIB, Niazlin;
MASRI, Siti Norbaya

Publication type:

Article

Construction of a Prognostic Model for Cervical Cancer Related to lncRNA Based on Differential Co-expression Network and Functional Study of Key Gene EGFR-AS1.

Published in:

Journal of Cancer, 2025, v. 16, n. 7, p. 2321, doi. 10.7150/jca.108429

By:

Kailong Du;
Qian Chen;
Hui Fan;
Yunlong Lei;
Jian Zhang

Publication type:

Article

A theory of heterosis.

Published in:

Genetics, 2025, v. 230, n. 1, p. 1, doi. 10.1093/genetics/iyaf045

By:

Zeng, Zhao-Bang;
Gesteira, Gabriel De Siqueira;
Mo, Lujia;
Xiao, Yingjie;
Yan, Jianbing

Publication type:

Article

New perspectives on Drosophila melanogaster de novo gene origination revealed by investigation of ancient African genetic variation.

Published in:

Genetics, 2025, v. 230, n. 1, p. 1, doi. 10.1093/genetics/iyaf044

By:

Cridland, Julie M;
Polston, Elizabeth S;
Begun, David J

Publication type:

Article

ASiDentify (ASiD): a machine learning model to predict new autism spectrum disorder risk genes.

Published in:

Genetics, 2025, v. 230, n. 1, p. 1, doi. 10.1093/genetics/iyaf040

By:

Rynard, Katherine M;
Han, Kara;
Wainberg, Michael;
Calarco, John A;
Lee, Hyun O;
Lipshitz, Howard D;
Smibert, Craig A;
Tripathy, Shreejoy J

Publication type:

Article

Genomic and clinical‑pathological features of mucinous cystadenocarcinoma of the breast with HER2 amplification: A case report.

Published in:

2025

By:

Liu, Liling;
Li, Mingxian;
Qiu, Xinmin;
Zheng, Xirun;
Zheng, Guangjuan;
Yang, Haifeng

Publication type:

Case Study

Beyond clinical genomics: addressing critical gaps in One Health AMR surveillance.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1596720

By:

Vallejo-Espín, Diana;
Galarza-Mayorga, Jael;
Lalaleo, Liliana;
Calero-Cáceres, William

Publication type:

Article

Alkane degradation mechanism of Mixta calida HXX308 isolated from sediment of the Mariana Trench.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1579612

By:

Yang, Yizi;
He, Xinxin;
Zhang, Yulin;
Zhang, Xiao-Hua

Publication type:

Article