Works matching DE "GENOMIC information retrieval"

Results: 284

Integrated genomic and transcriptomic insights into the two-component high-affinity nitrate transporters in allotetraploid rapeseed.

Published in:

Plant & Soil, 2018, v. 427, n. 1/2, p. 245, doi. 10.1007/s11104-018-3652-3

By:

Hua, Ying-peng;
Zhou, Ting;
Song, Hai-xing;
Guan, Chun-yun;
Zhang, Zhen-hua

Publication type:

Article

Visualization of robust L1PCA.

Published in:

Stat, 2016, v. 5, n. 1, p. 173, doi. 10.1002/sta4.113

By:

Zhou, Yi‐Hui;
Marron, J. S.

Publication type:

Article

Genomic information of the arsenic-resistant bacterium Lysobacter arseniciresistens type strain ZS79 and comparison of Lysobacter draft genomes.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0070-5

By:

Liu, Lin;
Zhang, Shengzhe;
Luo, Meizhong;
Wang, Gejiao

Publication type:

Article

Stem cell programs are retained in human leukemic lymphoblasts.

Published in:

Oncogene, 2015, v. 34, n. 16, p. 2083, doi. 10.1038/onc.2014.148

By:

Fan, D;
Zhou, X;
Li, Z;
Li, Z-Q;
Duan, C;
Liu, T;
Zhang, F;
Huang, Y;
Zhang, Y;
Gao, F;
Guo, Y;
Gupta, R;
Chen, G;
Enver, T;
Tang, J;
Hong, D

Publication type:

Article

Genome Survey Sequencing of Acer truncatum Bunge to Identify Genomic Information, Simple Sequence Repeat (SSR) Markers and Complete Chloroplast Genome.

Published in:

Forests (19994907), 2019, v. 10, n. 2, p. 87, doi. 10.3390/f10020087

By:

Wang, Rongkai;
Fan, Jinshuan;
Chang, Pan;
Zhu, Ling;
Zhao, Mengran;
Li, Lingli

Publication type:

Article

A LAD-based method for selecting short oligo probes for genotyping applications.

Published in:

OR Spectrum, 2008, v. 30, n. 2, p. 249, doi. 10.1007/s00291-007-0089-0

By:

Kwangsoo Kim;
Hong Ryoo

Publication type:

Article

MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/496957

By:

Lawrence, Carolyn J.;
Harper, Lisa C.;
Schaeffer, Mary L.;
Sen, Taner Z.;
Seigfried, Trent E.;
Campbell, Darwin A.

Publication type:

Article

SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/412696

By:

Carlos daMaia, Luciano;
Palmieri, Dario Abel;
de Souza, Velci Queiroz;
Kopp, Mauricio Marini;
de Carvalho, Fernando Irajá Félix;
de Oliveira, Antonio Costa

Publication type:

Article

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First Steps.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/147563

By:

Page, Grier P.;
Coulibaly, Issa

Publication type:

Article

Feature context-dependency and complexity-reduction in probability landscapes for integrative genomics.

Published in:

Theoretical Biology & Medical Modelling, 2008, v. 5, p. 1, doi. 10.1186/1742-4682-5-21

By:

Lesne, Annick;
Benecke, Arndt

Publication type:

Article

MODA: An efficient algorithm for network motif discovery in biological networks.

Published in:

Genes & Genetic Systems, 2009, v. 84, n. 5, p. 385, doi. 10.1266/ggs.84.385

By:

Omidi, Saeed;
Schreiber, Falk;
Masoudi-Nejad, Ali

Publication type:

Article

Incorporating genomic information and predicting gene expression patterns in a simplified biogeochemical model.

Published in:

Biogeosciences Discussions, 2013, v. 10, n. 1, p. 815, doi. 10.5194/bgd-10-815-2013

By:

Wang, P.;
Burd, A. B.;
Moran, M. A.;
Hood, R. R.;
Coles, V. J.;
Yager, P. L.

Publication type:

Article

Precision oncology: Charting a path forward to broader deployment of genomic profiling.

Published in:

2017

By:

Schram, Alison M.;
Berger, Michael F.;
Hyman, David M.

Publication type:

journal article

Systematic discovery of conservation states for single-nucleotide annotation of the human genome.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0488-1

By:

Arneson, Adriana;
Ernst, Jason

Publication type:

Article

What Constitutes Reasonable Evidence of Efficacy and Effectiveness to Guide Oncology Treatment Decisions?

Published in:

Oncologist, 2010, v. 15, p. 19, doi. 10.1634/theoncologist.2010-S1-19

By:

Sargent, Daniel

Publication type:

Article

Computational recognition for long non-coding RNA (lncRNA): Software and databases.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 1, p. 9, doi. 10.1093/bib/bbv114

By:

Sohiya Yotsukura;
duVerle, David;
Timothy Hancock;
Yayoi Natsume-Kitatani;
Hiroshi Mamitsuka

Publication type:

Article

Computational based design and tracking of synthetic variants of Porcine circovirus reveal relations between silent genomic information and viral fitness.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89918-6

By:

Baron, Lia;
Atar, Shimshi;
Zur, Hadas;
Roopin, Modi;
Goz, Eli;
Tuller, Tamir

Publication type:

Article

Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2018.00693

By:

Zenger, Kyall R.;
Khatkar, Mehar S.;
Jones, David B.;
Khalilisamani, Nima;
Jerry, Dean R.;
Raadsma, Herman W.

Publication type:

Article

Medical Alert: Alarming Challenges Facing Medical Technology Innovation.

Published in:

Journal of Business & Technology Law, 2011, v. 6, n. 1, p. 35

By:

SUNG, LAWRENCE M.

Publication type:

Article

Analysis of Endocrine Disruption in Southern California Coastal Fish Using an Aquatic Multispecies Microarray.

Published in:

Environmental Health Perspectives, 2009, v. 117, n. 2, p. 223, doi. 10.1289/ehp.11627

By:

Baker, Michael E.;
Ruggeri, Barbara;
Sprague, L. James;
Eckhardt-Ludka, Colleen;
Lapira, Jennifer;
Wick, Ivan;
Soverchia, Laura;
Ubaldi, Massimo;
Polzonetti-Magni, Alberta Maria;
Vidal-Dorsch, Doris;
Bay, Steven;
Gully, Joseph R.;
Reyes, Jesus A.;
Kelley, Kevin M.;
Schlenk, Daniel;
Breen, Ellen C.;
Šášik, Roman;
Hardiman, Gary

Publication type:

Article

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-80

By:

Hsing, Michael;
Byler, Kendall Grant;
Cherkasov, Artem

Publication type:

Article

Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-76

By:

Ruths, Derek;
Nakhleh, Luay;
Ram, Prahlad T.

Publication type:

Article

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-827

By:

Dan-Qing Tian;
Xiao-Yun Pan;
Yong-Ming Yu;
Wei-Yong Wang;
Fei Zhang;
Ya-Ying Ge;
Xiao-Lan Shen;
Fu-Quan Shen;
Xiao-Jing Liu

Publication type:

Article

De novo transcriptome sequencing of axolotl blastema for identification of differentially expressed genes during limb regeneration.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-434

By:

Cheng-Han Wu;
Mong-Hsun Tsai;
Chia-Chuan Ho;
Chien-Yu Chen;
Hsuan-Shu Lee

Publication type:

Article

A LDA-based approach to promoting ranking diversity for genomics information retrieval.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-13-S3-S2

By:

Yan Chen;
Xiaoshi Yin;
Zhoujun Li;
Xiaohua Hu;
Jimmy Xiangji Huang

Publication type:

Article

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0399-9

By:

Lyu, Ming-Ju Amy;
Gowik, Udo;
Kelly, Steve;
Covshoff, Sarah;
Mallmann, Julia;
Westhoff, Peter;
Hibberd, JulianM.;
Stata, Matt;
Sage, Rowan F.;
Haorong Lu;
Xiaofeng Wei;
Gane Ka-Shu Wong;
Xin-Guang Zhu

Publication type:

Article

A Quick Guide to Genomics and Bioinformatics Training for Clinical and Public Audiences.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003510

By:

Brazas, Michelle D.;
Lewitter, Fran;
Schneider, Maria Victoria;
van Gelder, Celia W. G.;
Palagi, Patricia M.

Publication type:

Article

The Regional Student Group Program of the ISCB Student Council: Stories from the Road.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003241

By:

Macintyre, Geoff;
Michaut, Magali;
Abeel, Thomas

Publication type:

Article

Characterization of a novel phage infecting the pathogenic multidrug-resistant Bacillus cereus and functional analysis of its endolysin.

Published in:

Applied Microbiology & Biotechnology, 2018, v. 102, n. 18, p. 7901, doi. 10.1007/s00253-018-9219-7

By:

Peng, Qin;
Yuan, Yihui

Publication type:

Article

Estimates of genetic trend for single-step genomic evaluations.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0410-1

By:

Meyer, Karin;
Tier, Bruce;
Swan, Andrew

Publication type:

Article

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0185-1

By:

Vitezica, Zulma G.;
Varona, Luis;
Elsen, Jean-Michel;
Misztal, Ignacy;
Herring, William;
Legarra, Andrès

Publication type:

Article

Sequencing data: A genomic network to monitor Earth.

Published in:

2012

By:

Davies, Neil;
Field, Dawn;
The Genomic Observatories Network

Publication type:

Letter

Efficient Reconstruction of Metabolic Pathways by Bidirectional Chemical Search.

Published in:

Bulletin of Mathematical Biology, 2009, v. 71, n. 3, p. 750, doi. 10.1007/s11538-008-9380-8

By:

Félix, Liliana;
Rosselló, Francesc;
Valiente, Gabriel

Publication type:

Article

Realizing the full potential of precision health: The need to include patient-reported health behavior, mental health, social determinants, and patient preferences data.

Published in:

Journal of Clinical & Translational Science, 2018, v. 2, n. 3, p. 183, doi. 10.1017/cts.2018.31

By:

Glasgow, Russell E.;
Kwan, Bethany M.;
Matlock, Daniel D.

Publication type:

Article

On a variance stabilizing model and its application to genomic data.

Published in:

Journal of Applied Statistics, 2013, v. 40, n. 11, p. 2354, doi. 10.1080/02664763.2013.811480

By:

Vilca, Filidor;
Rodrigues-Motta, Mariana;
Leiva, Víctor

Publication type:

Article

Implications of SNP weighting on single-step genomic predictions for different reference population sizes.

Published in:

Journal of Animal Breeding & Genetics, 2017, v. 134, n. 6, p. 463, doi. 10.1111/jbg.12288

By:

Lourenco, D. A. L.;
Fragomeni, B. O.;
Bradford, H. L.;
Menezes, I. R.;
Ferraz, J. B. S.;
Aguilar, I.;
Tsuruta, S.;
Misztal, I.

Publication type:

Article

Estimation of total genetic effects for survival time in crossbred laying hens showing cannibalism, using pedigree or genomic information.

Published in:

Journal of Animal Breeding & Genetics, 2017, v. 134, n. 1, p. 60, doi. 10.1111/jbg.12245

By:

Brinker, T.;
Raymond, B.;
Bijma, P.;
Vereijken, A.;
Ellen, E.D.

Publication type:

Article

Impact of fitting dominance and additive effects on accuracy of genomic prediction of breeding values in layers.

Published in:

Journal of Animal Breeding & Genetics, 2016, v. 133, n. 5, p. 334, doi. 10.1111/jbg.12225

By:

Heidaritabar, M.;
Wolc, A.;
Arango, J.;
Zeng, J.;
Settar, P.;
Fulton, J.E.;
O'Sullivan, N.P.;
Bastiaansen, J.W.M.;
Fernando, R.L.;
Garrick, D.J.;
Dekkers, J.C.M.

Publication type:

Article

Interplay between heritability, genetic correlation and economic weighting in a selection index with and without genomic information.

Published in:

Journal of Animal Breeding & Genetics, 2013, v. 130, n. 6, p. 456, doi. 10.1111/jbg.12051

By:

Haberland, A.M.;
Pimentel, E.C.G.;
Ytournel, F.;
Erbe, M.;
Simianer, H.

Publication type:

Article

Genomic analysis for managing small and endangered populations: a case study in Tyrol Grey cattle.

Published in:

Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00173

By:

Mészáros, Gábor;
Boison, Solomon A.;
O'Brien, Ana M. Pérez;
Ferenčaković, Maja;
Curik, Ino;
Da Silva, Marcos V. Barbosa;
Utsunomiya, Yuri T.;
Garcia, Jose F.;
Sölkner, Johann

Publication type:

Article

A CONFIGWARE APPROACH FOR HIGH-SPEED PARALLEL ANALYSIS OF GENOMIC DATA.

Published in:

Journal of Circuits, Systems & Computers, 2007, v. 16, n. 4, p. 527, doi. 10.1142/S0218126607003885

By:

LOPES, HEITOR S.;
LIMA, CARLOS R. ERIG;
MURATA, NORTON J.

Publication type:

Article

Cluster ensemble based on Random Forests for genetic data.

Published in:

BioData Mining, 2017, v. 10, p. 1, doi. 10.1186/s13040-017-0156-2

By:

Alhusain, Luluah;
Hafez, Alaaeldin M.

Publication type:

Article

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171744

By:

Budinich, Marko;
Bourdon, Jérémie;
Larhlimi, Abdelhalim;
Eveillard, Damien

Publication type:

Article

Cloud Computing for Comparative Genomics with Windows Azure Platform.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 527, doi. 10.4137/EBO.S9946

By:

Insik Kim;
Jae-Yoon Jung;
DeLuca, Todd F.;
Nelson, Tristan H.;
Wall, Dennis P.

Publication type:

Article

Reliable Phylogenetic Trees Building: A New Web Interface for FIGENIX.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 417, doi. 10.4137/EBO.S9179

By:

Paganini, Julien;
Gouret, Philippe

Publication type:

Article

Efficient Feature Selection and Multiclass Classification with Integrated Instance and Model Based Learning.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 197, doi. 10.4137/EBO.S9407

By:

Zhenqiu Liu;
Bensmail, Halima;
Ming Tan

Publication type:

Article

MiIP: The Monomer Identification and Isolation Program.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 293, doi. 10.4137/EBO.S9248

By:

Bun, Christopher;
Ziccardi, William;
Doering, Jeffrey;
Putonti, Catherine

Publication type:

Article

Promoter Sequences Prediction Using Relational Association Rule Mining.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 181, doi. 10.4137/EBO.S9376

By:

Czibula, Gabriela;
Bocicor, Maria-Iuliana;
Gergely Czibula, Istvan

Publication type:

Article

A Lossy Compression Technique Enabling Duplication-Aware Sequence Alignment.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 171, doi. 10.4137/EBO.S9131

By:

Freschi, Valerio;
Bogliolo, Alessandro

Publication type:

Article

Selection of Marker Genes Using Whole-Genome DNA Polymorphism Analysis.

Published in:

Evolutionary Bioinformatics, 2012, n. 8, p. 161, doi. 10.4137/EBO.S8989

By:

Bohle, Harry M.;
Gabaldón, Toni

Publication type:

Article