Works matching DE "GENOMIC information retrieval"

Results: 288

NOS2 as a prognostic biomarker for early-onset colorectal cancer based on public data and clinical validation analysis.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-88966-6

By:

Xing, Chaoqun;
Zhao, Lipeng;
Zou, Weiwei;
Peng, Xie;
Xing, Xiao-Liang;
Li, Jie

Publication type:

Article

Estimates of genetic trend for single-step genomic evaluations.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0410-1

By:

Meyer, Karin;
Tier, Bruce;
Swan, Andrew

Publication type:

Article

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0185-1

By:

Vitezica, Zulma G.;
Varona, Luis;
Elsen, Jean-Michel;
Misztal, Ignacy;
Herring, William;
Legarra, Andrès

Publication type:

Article

The effect of genomic information on optimal contribution selection in livestock breeding programs.

Published in:

Genetics Selection Evolution, 2013, v. 45, n. October, p. 1, doi. 10.1186/1297-9686-45-44

By:

Clark, Samuel A.;
Kinghorn, Brian P.;
Hickey, John M.;
van der Werf, Julius H. J.

Publication type:

Article

Influence of migrasome-associated long noncoding RNAs on the immune microenvironment and prognosis in lung adenocarcinoma.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03000-5

By:

Zhao, Hui;
Yang, Kunpeng;
Lan, Yuejiao;
Wu, Mingda;
Wang, Lei;
Cai, Chenglun;
Lv, Peiyun;
Sun, Wenjuan;
Lu, Xiaodan;
Wang, Bao

Publication type:

Article

Genomic information of the arsenic-resistant bacterium Lysobacter arseniciresistens type strain ZS79 and comparison of Lysobacter draft genomes.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0070-5

By:

Liu, Lin;
Zhang, Shengzhe;
Luo, Meizhong;
Wang, Gejiao

Publication type:

Article

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

Published in:: GigaScience, 2015, v. 4, n. 1, p. N.PAG, doi. 10.1186/s13742-015-0076-3
Publication type:: Article

GENOMIC RESEARCH AND DATA-SHARING: TIME TO REVISIT AUSTRALIAN LAWS?

Published in:

University of Queensland Law Journal, 2020, v. 39, n. 2, p. 341, doi. 10.38127/uqlj.v39i2.5031

By:

JOWETT, STEPHANIE;
DALLASTON, ELIZABETH;
BENNETT, BELINDA

Publication type:

Article

Bioinformatic Primer for Clinical and Translational Science.

Published in:

CTS: Clinical & Translational Science, 2008, v. 1, n. 2, p. 174, doi. 10.1111/j.1752-8062.2008.00038.x

By:

Faustino, Randolph S.;
Chiriac, Anca;
Terzic, Andre

Publication type:

Article

Metagenomics: Benchmarks and standards.

Published in:: Nature, 2008, v. 453, n. 7195, p. 687, doi. 10.1038/453687b
Publication type:: Article

Environmental palaeogenomic reconstruction of an Ice Age algal population.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01710-4

By:

Lammers, Youri;
Heintzman, Peter D.;
Alsos, Inger Greve

Publication type:

Article

What Constitutes Reasonable Evidence of Efficacy and Effectiveness to Guide Oncology Treatment Decisions?

Published in:

Oncologist, 2010, v. 15, p. 19, doi. 10.1634/theoncologist.2010-S1-19

By:

Sargent, Daniel

Publication type:

Article

High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions.

Published in:

Plant Journal, 2012, v. 70, n. 1, p. 39, doi. 10.1111/j.1365-313X.2012.04902.x

By:

Kueger, Stephan;
Steinhauser, Dirk;
Willmitzer, Lothar;
Giavalisco, Patrick

Publication type:

Article

Metabolite analyses of single cells.

Published in:

Plant Journal, 2012, v. 70, n. 1, p. 30, doi. 10.1111/j.1365-313X.2012.04967.x

By:

Oikawa, Akira;
Saito, Kazuki

Publication type:

Article

Development And Validation of An RNA Binding Protein-Associated Prognostic Model for Colon Adenocarcinoma.

Published in:

Journal of Cancer, 2025, v. 16, n. 8, p. 2537, doi. 10.7150/jca.103477

By:

Xiajing Yu;
Daixin Guo;
Jie Gao;
Jialing Hu;
Wenyige Zhang;
Qijun Yang;
Jingyi Wang;
Yingcheng He;
Kaili Liao;
Xiaozhong Wang

Publication type:

Article

Systematic reanalysis of genomic data improves quality of variant interpretation.

Published in:

Clinical Genetics, 2018, v. 94, n. 1, p. 174, doi. 10.1111/cge.13259

By:

Hiatt, S. M.;
Amaral, M. D.;
Bowling, K. M.;
Finnila, C. R.;
Thompson, M. L.;
Gray, D. E.;
Lawlor, J. M. J.;
Cochran, J. N.;
Bebin, E. M.;
Brothers, K. B.;
East, K. M.;
Kelley, W. V.;
Lamb, N. E.;
Levy, S. E.;
Lose, E. J.;
Neu, M. B.;
Rich, C. A.;
Simmons, S.;
Myers, R. M.;
Barsh, G. S.

Publication type:

Article

Next-generation sequencing: ready for the clinics?

Published in:

Clinical Genetics, 2012, v. 81, n. 6, p. 503, doi. 10.1111/j.1399-0004.2012.01865.x

By:

Desai, AN;
Jere, A

Publication type:

Article

Motivators for participation in a whole-genome sequencing study: implications for translational genomics research.

Published in:

European Journal of Human Genetics, 2011, v. 19, n. 12, p. 1213, doi. 10.1038/ejhg.2011.123

By:

Facio, Flavia M;
Brooks, Stephanie;
Loewenstein, Johanna;
Green, Susannah;
Biesecker, Leslie G;
Biesecker, Barbara B

Publication type:

Article

Identifying common components across biological network graphs using a bipartite data model.

Published in:

2014

By:

Baker, E. J.;
Culpepper, C.;
Philips, C.;
Bubier, J.;
Langston, M.;
Chesler, E. J.

Publication type:

Conference Paper/Materials

An integrated clinical and genomic information system for cancer precision medicine.

Published in:

BMC Medical Genomics, 2018, v. 11, p. N.PAG

By:

Jang, Yeongjun;
Choi, Taekjin;
Kim, Jongho;
Park, Jisub;
Seo, Jihae;
Kim, Sangok;
Kwon, Yeajee;
Lee, Seungjae;
Lee, Sanghyuk

Publication type:

Article

RedLabRA; a Spanish Network of Microbiology Laboratories for the Surveillance of Antibiotic Resistant Microorganisms.

Published in:

Revista Española de Quimioterapia, 2021, v. 34, p. 12, doi. 10.37201/req/s01.03.2021

By:

Cañada-García, Javier E.;
Pérez-Vázquez, María;
Oteo-Iglesias, Jesús

Publication type:

Article

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Published in:

BMC Microbiology, 2009, v. 9, p. 1, doi. 10.1186/1471-2180-9-S1-S8

By:

Shaowu Meng;
Brown, Douglas E.;
Ebbole, Daniel J.;
Torto-Alalibo, Trudy;
Yeon Yee Oh;
Jixin Deng;
Mitchell, Thomas K.;
Dean, Ralph A.

Publication type:

Article

Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains.

Published in:

BMC Microbiology, 2009, v. 9, p. 1, doi. 10.1186/1471-2180-9-S1-S4

By:

Lindeberg, Magdalen;
Biehl, Bryan S.;
Glasner, Jeremy D.;
Perna, Nicole T.;
Collmer, Alan;
Collmer, Candace W.

Publication type:

Article

The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions.

Published in:

BMC Microbiology, 2009, v. 9, p. 1, doi. 10.1186/1471-2180-9-S1-S1

By:

Torto-Alalibo, Trudy;
Collmer, Candace W.;
Gwinn-Giglio, Michelle

Publication type:

Article

Precision oncology: Charting a path forward to broader deployment of genomic profiling.

Published in:

2017

By:

Schram, Alison M.;
Berger, Michael F.;
Hyman, David M.

Publication type:

journal article

Genetic bases of human comorbidity.

Published in:

Russian Journal of Genetics, 2015, v. 51, n. 4, p. 408, doi. 10.1134/S1022795415040092

By:

Puzyrev, V.

Publication type:

Article

Genomic selection of milk cattle. The practical application over five years.

Published in:

Russian Journal of Genetics, 2013, v. 49, n. 11, p. 1089, doi. 10.1134/S1022795413100104

By:

Smaragdov, M.

Publication type:

Article

Systematic discovery of conservation states for single-nucleotide annotation of the human genome.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0488-1

By:

Arneson, Adriana;
Ernst, Jason

Publication type:

Article

Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets.

Published in:

Bioengineering (Basel), 2024, v. 11, n. 3, p. 263, doi. 10.3390/bioengineering11030263

By:

Gharavi, Erfaneh;
LeRoy, Nathan J.;
Zheng, Guangtao;
Zhang, Aidong;
Brown, Donald E.;
Sheffield, Nathan C.

Publication type:

Article

Genetic Code Evolution Reveals the Neutral Emergence of Mutational Robustness, and Information as an Evolutionary Constraint.

Published in:

Life (2075-1729), 2015, v. 5, n. 2, p. 1301, doi. 10.3390/life5021301

By:

Massey, Steven E.

Publication type:

Article

Stem cell programs are retained in human leukemic lymphoblasts.

Published in:

Oncogene, 2015, v. 34, n. 16, p. 2083, doi. 10.1038/onc.2014.148

By:

Fan, D;
Zhou, X;
Li, Z;
Li, Z-Q;
Duan, C;
Liu, T;
Zhang, F;
Huang, Y;
Zhang, Y;
Gao, F;
Guo, Y;
Gupta, R;
Chen, G;
Enver, T;
Tang, J;
Hong, D

Publication type:

Article

Prediction of Multiple-Trait and Multiple-Environment Genomic Data Using Recommender Systems.

Published in:

G3: Genes | Genomes | Genetics, 2018, v. 8, n. 1, p. 131, doi. 10.1534/g3.117.300309

By:

Montesinos-López, Osval A.;
Montesinos-López, Abelardo;
Crossa, José;
Montesinos-López, José C.;
Mota-Sanchez, David;
Estrada-González, Fermín;
Gillberg, Jussi;
Singh, Ravi;
Mondal, Suchismita;
Juliana, Philomin

Publication type:

Article

Information Management of Genome Enabled Data Streams for Pseudomonas syringae on the Pseudomonas-Plant Interaction (PPI) Website.

Published in:

Genes, 2011, v. 2, n. 4, p. 841, doi. 10.3390/genes2040841

By:

Lindeberg, Magdalen

Publication type:

Article

A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171744

By:

Budinich, Marko;
Bourdon, Jérémie;
Larhlimi, Abdelhalim;
Eveillard, Damien

Publication type:

Article

Utilizing DNA Strands for Secured Data-Hiding with High Capacity.

Published in:

International Journal of Interactive Mobile Technologies, 2017, v. 11, n. 2, p. 88, doi. 10.3991/ijim.v11i2.6565

By:

Marwan, Samiha;
Shawish, Ahmed;
Nagaty, Khaled

Publication type:

Article

DNA Computing: Challenges and Application.

Published in:

International Journal of Interactive Mobile Technologies, 2017, v. 11, n. 2, p. 74, doi. 10.3991/ijim.v11i2.6564

By:

El-Seoud, Samir Abou;
Mohamed, Reham;
Ghoneimy, Samy

Publication type:

Article

Integrative genomics in cardiovascular medicine.

Published in:

Cardiovascular Research, 2013, v. 97, n. 4, p. 623, doi. 10.1093/cvr/cvs303

By:

Ware, James S.;
Petretto, Enrico;
Cook, Stuart A.

Publication type:

Article

MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/496957

By:

Lawrence, Carolyn J.;
Harper, Lisa C.;
Schaeffer, Mary L.;
Sen, Taner Z.;
Seigfried, Trent E.;
Campbell, Darwin A.

Publication type:

Article

SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/412696

By:

Carlos daMaia, Luciano;
Palmieri, Dario Abel;
de Souza, Velci Queiroz;
Kopp, Mauricio Marini;
de Carvalho, Fernando Irajá Félix;
de Oliveira, Antonio Costa

Publication type:

Article

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First Steps.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/147563

By:

Page, Grier P.;
Coulibaly, Issa

Publication type:

Article

Gene Networks for the Integration and Understanding of Gene Expression Characteristics.

Published in:

Weed Science, 2008, v. 56, n. 2, p. 314, doi. 10.1614/WS-07-092.1

By:

Shisong Ma;
Bohnert, Hans J.

Publication type:

Article

In search of rare variants: Preliminary results from whole genome sequencing of 1,325 individuals with psychophysiological endophenotypes.

Published in:

Psychophysiology, 2014, v. 51, n. 12, p. 1309, doi. 10.1111/psyp.12350

By:

Vrieze, Scott I.;
Malone, Stephen M.;
Vaidyanathan, Uma;
Kwong, Alan;
Kang, Hyun Min;
Zhan, Xiaowei;
Flickinger, Matthew;
Irons, Daniel;
Jun, Goo;
Locke, Adam E.;
Pistis, Giorgio;
Porcu, Eleonora;
Levy, Shawn;
Myers, Richard M.;
Oetting, William;
McGue, Matt;
Abecasis, Goncalo;
Iacono, William G.

Publication type:

Article

Are we doing enough to extract genomic information from our data?

Published in:

Psychophysiology, 2014, v. 51, n. 12, p. 1335, doi. 10.1111/psyp.12357

By:

Schumann, Gunter

Publication type:

Article

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0399-9

By:

Lyu, Ming-Ju Amy;
Gowik, Udo;
Kelly, Steve;
Covshoff, Sarah;
Mallmann, Julia;
Westhoff, Peter;
Hibberd, JulianM.;
Stata, Matt;
Sage, Rowan F.;
Haorong Lu;
Xiaofeng Wei;
Gane Ka-Shu Wong;
Xin-Guang Zhu

Publication type:

Article

Simulation study for analysis of binary responses in the presence of extreme case problems.

Published in:

Genetics Selection Evolution, 2011, v. 43, n. 11, p. 1, doi. 10.1186/1297-9686-43-41

By:

Rekaya, Romdhane;
Sapp, Robyn L.;
Hay, El H.;
Davis, Ryan;
Bertrand, Joseph K.

Publication type:

Article

Efficient Reconstruction of Metabolic Pathways by Bidirectional Chemical Search.

Published in:

Bulletin of Mathematical Biology, 2009, v. 71, n. 3, p. 750, doi. 10.1007/s11538-008-9380-8

By:

Félix, Liliana;
Rosselló, Francesc;
Valiente, Gabriel

Publication type:

Article

Molecular taxonomy of Pseudapocryptes (Bleeker, 1874) mudskippers from Sundarban mangroves, India.

Published in:

Mitochondrial DNA. Part A, 2017, v. 28, n. 1, p. 30, doi. 10.3109/19401736.2015.1106527

By:

Mahadevan, G.;
Ravi, V.;
Bharathi, R.

Publication type:

Article

Computational recognition for long non-coding RNA (lncRNA): Software and databases.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 1, p. 9, doi. 10.1093/bib/bbv114

By:

Sohiya Yotsukura;
duVerle, David;
Timothy Hancock;
Yayoi Natsume-Kitatani;
Hiroshi Mamitsuka

Publication type:

Article

Implications of SNP weighting on single-step genomic predictions for different reference population sizes.

Published in:

Journal of Animal Breeding & Genetics, 2017, v. 134, n. 6, p. 463, doi. 10.1111/jbg.12288

By:

Lourenco, D. A. L.;
Fragomeni, B. O.;
Bradford, H. L.;
Menezes, I. R.;
Ferraz, J. B. S.;
Aguilar, I.;
Tsuruta, S.;
Misztal, I.

Publication type:

Article

Estimation of total genetic effects for survival time in crossbred laying hens showing cannibalism, using pedigree or genomic information.

Published in:

Journal of Animal Breeding & Genetics, 2017, v. 134, n. 1, p. 60, doi. 10.1111/jbg.12245

By:

Brinker, T.;
Raymond, B.;
Bijma, P.;
Vereijken, A.;
Ellen, E.D.

Publication type:

Article