Works matching DE "GENOMES"

Results: 5000

A Comparative Analysis of Complete Mitochondrial Genomes of Two Tyulka Clupeonella Kessler, 1877 (Actinopterygii: Clupeidae) Species Allowed to Clarify Their Evolutionary History in the Ponto-Сaspian Region.

Published in:

Biology Bulletin, 2025, v. 52, n. 2, p. 1, doi. 10.1134/S1062359024610024

By:

Karabanov, D. P.;
Kozlova, N. V.;
Pereboev, D. D.;
Efeikin, B. D.;
Kotov, A. A.

Publication type:

Article

Comparative Analysis of Recombination Events in Common Wheat Lines Produced with the Involvement of Hexaploid Triticum Species with Different Genome Composition.

Published in:

Russian Journal of Genetics, 2025, v. 61, n. 4, p. 373, doi. 10.1134/S1022795424701771

By:

Orlovskaya, O. A.;
Vakula, S. I.;
Leonova, I. N.

Publication type:

Article

A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05155-w

By:

Liao, Shuai;
Zhang, Zhen;
Yang, Chenxuan;
Gardner, Elliot M.;
Peng, Yanqiong;
Xiong, Yongmei;
Dai, Seping;
Deng, Yunfei

Publication type:

Article

Chromosome-level genome assembly and annotation of Gypsophila vaccaria.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05121-6

By:

Zhang, Chaoqiang;
Zhang, Jiayin;
Yang, Bin;
Zhao, Yunchen;
Yin, Liang;
Wang, Enjun;
Zhao, Yaqiu;
Li, Jinglong

Publication type:

Article

A telomere-to-telomere genome assembly of Camellia nitidissima.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05157-8

By:

Wang, Xin-Feng;
Liu, Tong-Jian;
Feng, Tian;
Huang, Hui-Run;
Zou, Pu;
Wei, Xiao;
Wu, Xing;
Chai, Sheng-Feng;
Yan, Hai-Fei

Publication type:

Article

Chromosome-level genome assembly of the parasitoid wasp Aenasius arizonensis.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05020-w

By:

Dong, Wan-Ying;
Huang, Tian-Yu;
Zhao, Sheng-Yuan;
Zhang, Juan;
Lei, Yang;
Huang, Jun;
Zhou, Zhong-Shi;
Lu, Yao-Bin

Publication type:

Article

Haplotype-resolved chromosomal-level genome assembly of Prunus mahaleb.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04873-5

By:

Fu, Chenlong;
Li, Meng;
Zhao, Zhuang;
Yu, Lixia;
Wang, Xianrong;
Hou, Zhuangwei;
Wang, Zefu

Publication type:

Article

Chromosome-level draft genome assembly of Hypomesus nipponensis reveals transposable element expansion reshaping the genome structure.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1502681

By:

Zhu, Chenzhao;
Kuang, Youyi;
Li, Zhe;
Tang, Fujiang

Publication type:

Article

Distribution of PAX1 and ZNF582 Hypermethylation in the Oral Exfoliated Cells of Oral Squamous Cell Carcinoma.

Published in:

Clinical Medicine Insights: Oncology, 2025, p. 1, doi. 10.1177/11795549251335172

By:

Mao, Ya-Qing;
Sun, Rui;
Liu, Shuo;
Zhang, Wen-Bo;
Yu, Yao;
Jia, Ling-Fei;
Yu, Guang-Yan;
Peng, Xin

Publication type:

Article

Self-authenticating genomic materials in Escherichia coli via advanced genome signatures.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08171-z

By:

Wang, Zhaoguan;
Cui, Jingsong;
Liu, Qian;
Li, Jiawei;
Guo, Chi;
Liu, Yiyang;
Jiang, Changyue;
Xue, Hui;
Li, Jiaojiao;
Ke, Yonggang;
Qi, Hao

Publication type:

Article

AlfaPang: alignment free algorithm for pangenome graph construction.

Published in:

Algorithms for Molecular Biology, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13015-025-00277-7

By:

Cicherski, Adam;
Lisiecka, Anna;
Dojer, Norbert

Publication type:

Article

CoverM: read alignment statistics for metagenomics Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf147

By:

Aroney, Samuel T N;
Newell, Rhys J P;
Nissen, Jakob N;
Camargo, Antonio Pedro;
Tyson, Gene W;
Woodcroft, Ben J

Publication type:

Article

Sawfish: improving long-read structural variant discovery and genotyping with local haplotype modeling Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf136

By:

Saunders, Christopher T;
Holt, James M;
Baker, Daniel N;
Lake, Juniper A;
Belyeu, Jonathan R;
Kronenberg, Zev;
Rowell, William J;
Eberle, Michael A

Publication type:

Article

wgatools: an ultrafast toolkit for manipulating whole-genome alignments Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf132

By:

Wei, Wenjie;
Gui, Songtao;
Yang, Jian;
Garrison, Erik;
Yan, Jianbing;
Liu, Hai-Jun

Publication type:

Article

MAFin: motif detection in multiple alignment files Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf125

By:

Patsakis, Michail;
Provatas, Kimonas;
Baltoumas, Fotis A;
Chantzi, Nikol;
Mouratidis, Ioannis;
Pavlopoulos, Georgios A;
Georgakopoulos-Soares, Ilias

Publication type:

Article

nf-core/pacvar: a pipeline for analyzing long-read PacBio whole genome and repeat expansion sequencing data Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf116

By:

Jain, Tanya;
Clelland, Claire

Publication type:

Article

Two haplotype-resolved telomere-to-telomere genome assemblies of Xanthoceras sorbifolium.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05057-x

By:

Liu, Yu;
Chen, Yijun;
Ren, Zizheng;
Li, Kui;
Wang, Xu;
Wu, Kai;
Liu, Jinfeng;
Sade, Nir;
He, Hang;
Li, Shouke;
Jiang, Haiyang;
Han, Xue

Publication type:

Article

Adenosine diphosphate-ribosylation greatly affects proteins function: a focus on neurodegenerative diseases.

Published in:

Frontiers in Aging Neuroscience, 2025, p. 1, doi. 10.3389/fnagi.2025.1575204

By:

Huang, Chaowen;
Xiao, Huilin;
Yang, Yang;
Luo, Jiankun;
Lai, Yixi;
Liu, Shizhen;
Mao, Kanmin;
Chen, Jialong;
Wang, Liling

Publication type:

Article

玉米全基因组 SSR 非随机分布研究.

Published in:

Southwest China Journal of Agricultural Sciences, 2025, v. 38, n. 2, p. 217, doi. 10.16213/j.cnki.scjas.2025.2.001

By:

高建明;
肖银;
辛德财;
桂枝1.

Publication type:

Article

Clinical Utility of Optical Genome Mapping as an Additional Tool in a Standard Cytogenetic Workup in Hematological Malignancies.

Published in:

Cancers, 2025, v. 17, n. 9, p. 1436, doi. 10.3390/cancers17091436

By:

Toruner, Gokce A.;
Hu, Shimin;
Loghavi, Sanam;
OK, Chi Young;
Tang, Zhenya;
Wei, Qing;
Kanagal-Shamanna, Rashmi;
Medeiros, L. Jeffrey;
Tang, Guilin

Publication type:

Article

Immune Deficiency/Dysregulation-Associated EBV-Positive Classic Hodgkin Lymphoma.

Published in:

Cancers, 2025, v. 17, n. 9, p. 1433, doi. 10.3390/cancers17091433

By:

Alibrahim, Mohamed Nazem;
Gloghini, Annunziata;
Carbone, Antonino

Publication type:

Article

Fermentation of Alginate and Its Oligosaccharides by the Human Gut Microbiota: Structure–Property Relationships and New Findings Focusing on Bacteroides xylanisolvens.

Published in:

Nutrients, 2025, v. 17, n. 9, p. 1424, doi. 10.3390/nu17091424

By:

Li, Jiayi;
Lv, Youjing;
Shao, Meng;
Lv, Depeng;
Fu, Zhiliang;
Guo, Peng;
Li, Quancai;
Shang, Qingsen

Publication type:

Article

dTOURS: Dense-region tagging for outbreak detection using ratio statistics.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0322663

By:

Wagner, Lukas;
Agarwala, Richa

Publication type:

Article

How similar are the molecular mechanisms of yeast and metazoan genome replication initiation?

Published in:

Biochemical Society Transactions, 2025, v. 53, n. 2, p. 353, doi. 10.1042/BST20220917

By:

Palm, Giacomo;
Costa, Alessandro

Publication type:

Article

H2A.Z deposition by the SWR complex is stimulated by polyadenine DNA sequences in nucleosomes.

Published in:

PLoS Biology, 2025, v. 23, n. 5, p. 1, doi. 10.1371/journal.pbio.3003059

By:

Converso, Cynthia;
Pierrakeas, Leonidas;
Chan, Lirong;
Chowdhury, Shalvi;
de Onis, Emily;
Kuznetsov, Vyacheslav I.;
Denu, John M.;
Luk, Ed

Publication type:

Article

MORPHOLOGICAL CHARACTERIZATION OF THE BANANA INDIGENOUS CULTIVAR ‘HAJI’ (MUSA X PARADISIACA) FOR GERMPLASM DEVELOPMENT IN INDONESIA.

Published in:

SABRAO Journal of Breeding & Genetics, 2025, v. 57, n. 2, p. 668, doi. 10.54910/sabrao2025.57.2.24

By:

Kurnianingsih, R.;
MASTUTI, R.;
NIKMATULLAH, A.;
Arumingtyas, E. L.

Publication type:

Article

A model of Hill-Robertson interference caused by purifying selection in a nonrecombining genome.

Published in:

Genetics, 2025, v. 230, n. 1, p. 1, doi. 10.1093/genetics/iyaf048

By:

Becher, Hannes;
Charlesworth, Brian

Publication type:

Article

The interictal transcriptomic map of migraine without aura.

Published in:

Journal of Headache & Pain, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s10194-025-02033-z

By:

Petschner, Peter;
Kumar, Sahel;
Nguyen, Duc A.;
Torok, Dora;
Gal, Zsofia;
Baksa, Daniel;
Gecse, Kinga;
Kokonyei, Gyongyi;
Mamitsuka, Hiroshi;
Juhasz, Gabriella

Publication type:

Article

Regional distribution of carbapenemase-producing Acinetobacter baumannii isolates in southern Spain (Andalusia).

Published in:

European Journal of Clinical Microbiology & Infectious Diseases, 2025, v. 44, n. 5, p. 1069, doi. 10.1007/s10096-025-05047-2

By:

Fernández-Cuenca, Felipe;
Rodríguez-Pallares, Salud;
López-Cerero, Lorena;
Gutiérrez-Fernández, José;
Bautista, María Fe;
Sánchez Gómez, Juan Antonio;
Sánchez-Yebra Romera, Waldo;
Delgado, Mercedes;
Recacha, Esther;
Pascual, Alvaro

Publication type:

Article

Genotyping and treatment issues with 'unusual' HCV 1 subtypes.

Published in:

European Journal of Clinical Microbiology & Infectious Diseases, 2025, v. 44, n. 5, p. 1265, doi. 10.1007/s10096-025-05038-3

By:

Caudai, Cinzia;
Pierotti, Piera;
Rossetti, Barbara;
Blanc, Pierluigi;
Zazzi, Maurizio

Publication type:

Article

The AdaptSgenoLasso, an extended version of the SgenoLasso, for gene mapping and for genomic prediction using the extremes.

Published in:

Statistics, 2025, v. 59, n. 3, p. 534, doi. 10.1080/02331888.2025.2456771

By:

Rabier, Charles-Elie;
Delmas, Céline

Publication type:

Article

Retraction Note: Genome assembly of M. spongiola and comparative genomics of the genus Morchella provide initial insights into taxonomy and adaptive evolution.

Published in:

2025

By:

Meng, Qing;
Xie, Zhanling;
Xu, Hongyan;
Guo, Jing;
Peng, Qingqing;
Li, Yanyan;
Yang, Jiabao;
Dong, Deyu;
Gao, Taizhen;
Zhang, Fan

Publication type:

Correction Notice

早期描述物种的模式标定及基因组解析：以中国第一个被描述的真菌新种五棱散尾鬼笔为例.

Published in:

Mycosystema, 2025, v. 44, n. 4, p. 1, doi. 10.13346/j.mycosystema.240296

By:

梁俊敏;
王科;
杜卓;
赵明君;
蔡磊;
戴玉成

Publication type:

Article

基于基因组重测序开发中华包革耳(金耳菌)菌株的鉴别标记.

Published in:

Mycosystema, 2025, v. 44, n. 4, p. 1, doi. 10.13346/j.mycosystema.240214

By:

沈真辉;
杨林雷;
曹瑶;
罗祥英;
杨爱霞;
陆青青;
子灵山;
李荣春

Publication type:

Article

Chromosome-level genome assembly of the freshwater bivalve Anodonta woodiana.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05078-6

By:

Chen, Xiubao;
Jiang, Tao;
Xue, Junren;
Gu, Mengying;
Wang, Meiyi;
Liu, Kai

Publication type:

Article

Rorippa daguanensis (Brassicaceae), a new species from eastern China.

Published in:

PhytoKeys, 2025, n. 253, p. 189, doi. 10.3897/phytokeys.253.145997

By:

Zhang, Wei;
Xiang, Xiao-Yan;
Han, Ting-Shen;
Shao, Jian-Wen;
Zhao, Kai

Publication type:

Article

The application of irreversible genomic states to define and trace ancient cell type homologies.

Published in:

EvoDevo, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s13227-025-00242-w

By:

Simakov, Oleg;
Wagner, Günter P.

Publication type:

Article

A Class of Allopolyploidy Showing High Duplicate Retention and Continued Homoeologous Exchanges.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 4, p. 1, doi. 10.1093/gbe/evaf054

By:

Coppage, Abbey;
Bhatnagar, Esha;
Joshi, Mitali;
Siddiqui, Mustafa;
McRae, Logan;
Conant, Gavin C

Publication type:

Article

Multi-proteins similarity-based sampling to select representative genomes from large databases.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06095-3

By:

Coudert, Rémi-Vinh;
Charrier, Jean-Philippe;
Jauffrit, Frédéric;
Flandrois, Jean-Pierre;
Brochier-Armanet, Céline

Publication type:

Article

Leveraging Whole Genomes, Mitochondrial DNA and Haploblocks to Decipher Complex Demographic Histories: An Example From a Broadly Admixed Arctic Fish.

Published in:

Molecular Ecology, 2025, v. 34, n. 10, p. 1, doi. 10.1111/mec.17772

By:

Dallaire, Xavier;
Normandeau, Eric;
Brazier, Thomas;
Harris, Les;
Hansen, Michael M.;
Mérot, Claire;
Moore, Jean‐Sébastien

Publication type:

Article

紫叶苔 (Pleurozia purpurea) 线粒体基因组密码子偏好性分析.

Published in:

Journal of Hebei University of Science & Technology, 2025, v. 46, n. 1, p. 91, doi. 10.7535/hbkd.2025yx01010

By:

杜梦雪;
张鑫;
高洁;
毕胜;
郝杰威;
张莉娜

Publication type:

Article

FGeneBERT: function-driven pre-trained gene language model for metagenomics.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf149

By:

Duan, Chenrui;
Zang, Zelin;
Xu, Yongjie;
He, Hang;
Li, Siyuan;
Liu, Zihan;
Lei, Zhen;
Zheng, Ju-Sheng;
Li, Stan Z

Publication type:

Article

Evaluating long-read assemblers to assemble several aphididae genomes.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf105

By:

Burger, Nicolaas F V;
Nicolis, Vittorio F;
Botha, Anna-Maria

Publication type:

Article

A comprehensive review and benchmark of differential analysis tools for Hi-C data.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf074

By:

Jorge, Elise;
Foissac, Sylvain;
Neuvial, Pierre;
Zytnicki, Matthias;
Vialaneix, Nathalie

Publication type:

Article

Selective interactions at pre-replication complexes categorize baseline and dormant origins.

Published in:

Nature Communications, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41467-025-59509-4

By:

Thakur, Bhushan L.;
Redon, Christophe E.;
Fu, Haiqing;
Sebastian, Robin;
Kusi, Nana A.;
Zhuang, Sophie Z.;
Pongor, Lorinc S.;
Bohr, Vilhelm A.;
Aladjem, Mirit I.

Publication type:

Article

New lytic and new temperate Staphylococcus hyicus phages.

Published in:

Virus Genes, 2025, v. 61, n. 3, p. 377, doi. 10.1007/s11262-025-02151-5

By:

Petrzik, Karel;
Sovová, Lucie

Publication type:

Article

An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf076

By:

Chan, Jennie;
Truglio, Mauro;
Schardl, Christopher L;
Cox, Murray P;
Young, Carolyn A;
Ganley, Austen R D

Publication type:

Article

Novel identification of zyxin upregulations in the motile phenotype of hepatocellular carcinoma.

Published in:

Modern Pathology, 2006, v. 19, n. 8, p. 1108, doi. 10.1038/modpathol.3800626

By:

Sy, Shirley M.-H.;
Lai, Paul B.-S.;
Pang, Etonia;
Wong, Navy L.-Y.;
Ka-Fai To;
Johnson, Philip J.;
Wong, Nathalie

Publication type:

Article

hMLH1 and MGMT inactivation as a mechanism of tumorigenesis in monoclonal gammopathies.

Published in:

2006

By:

Martin, Paloma;
Santón, Almudena;
García-Cosio, Mónica;
Bellas, Carmen;
Santón, Almudena;
García-Cosio, Mónica

Publication type:

journal article

Mismatch repair protein expression and microsatellite instability: a comparison of clear cell sarcoma of soft parts and metastatic melanoma.

Published in:

2006

By:

Garcia, Joaquin J.;
Kramer, Miranda J.;
O'Donnell, Richard J.;
Horvai, Andrew E.

Publication type:

journal article