Works matching DE "GENETIC transcription regulation"

Results: 3557

Expression regulation network in papillae of sea cucumbers: Whole-transcriptome and DNA methylation datasets.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05407-9

By:

Mai, Wenhong;
Sun, Jingxian;
Ning, Bingyu;
Zhao, Tanjun;
Yang, Haochen;
Ren, Liyuan;
Wang, Zengdong;
Cheng, Cao;
Zou, Ange;
Zhan, Yaoyao;
Chang, Yaqing

Publication type:

Article

Genome-wide characterization of the GmLUX binding preferences and its epigenic features in the soybean genome.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1607224

By:

Tianxiao, Lv;
Xiao, Hong;
Wang, Jingxing;
Zhang, Ling;
Fan, Tian;
Huang, Mingkun;
Tian, Chang-En;
Yang, Hua;
Hu, Yufang

Publication type:

Article

Identification and functional analysis of AvLACS genes unveils their role in lipid homeostasis and waterlogging tolerance in kiwifruit (Actinidia valvata Dunn).

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1580003

By:

Zhang, Meijuan;
Ye, Kaiyu;
Gao, Jianyou;
Liu, Shibiao;
Liu, Ruonan;
Chen, Yuexing;
Zhao, Qian;
Lei, Yushan;
Li, Jiewei;
Liu, Cuixia;
Wang, Faming

Publication type:

Article

Phase separated condensates of ATRX regulate neural progenitor identity.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61881-0

By:

Tomooka, Ryo;
Sanosaka, Tsukasa;
Miyagi, Tamami;
Andoh-Noda, Tomoko;
Banno, Satoe;
Mizota, Noriko;
Kanekura, Kohsuke;
Okano, Hideyuki;
Kohyama, Jun

Publication type:

Article

Forced expression of MSR repeat transcripts above a threshold limit breaks heterochromatin organisation.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61586-4

By:

Ching, Reagan W.;
Świst-Rosowska, Kalina M.;
Erikson, Galina;
Koschorz, Birgit;
Engist, Bettina;
Jenuwein, Thomas

Publication type:

Article

KansformerEPI: a deep learning framework integrating KAN and transformer for predicting enhancer–promoter interactions Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf272

By:

Zhang, Tianjiao;
Shao, Saihong;
Zhang, Hongfei;
Zhao, Zhongqian;
Zhao, Xingjie;
Zhang, Xiang;
Wang, Zhenxing;
Wang, Guohua

Publication type:

Article

Chrombus-XMBD: a graph convolution model predicting 3D-genome from chromatin features Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf183

By:

Zeng, Yuanyuan;
You, Zhiyu;
Guo, Jiayang;
Zhao, Jialin;
Zhou, Ying;
Huang, Jialiang;
Lyu, Xiaowen;
Chen, Longbiao;
Li, Qiyuan

Publication type:

Article

IGFBP1 is One of 10 Metabolic Factors Predicting Recurrence Free Survival in Gastric Cancer and Promotes Cancer Progression via ZFX-IGFBP1 Axis.

Published in:

OncoTargets & Therapy, 2025, v. 18, p. 717, doi. 10.2147/OTT.S499695

By:

Liu, Hui;
Huang, Yongming;
Fu, Guanghua;
Lei, Bo;
Liu, Ke

Publication type:

Article

Genome-Wide Identification and Analysis of the AHL Gene Family in Pepper (Capsicum annuum L.).

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6527, doi. 10.3390/ijms26136527

By:

Sui, Xiao-Yan;
Li, Yan-Long;
Wang, Xi;
Zhong, Yi;
Cui, Qing-Zhi;
Luo, Yin;
Tang, Bing-Qian;
Liu, Feng;
Zou, Xue-Xiao

Publication type:

Article

Special Issue "25 Anniversary of Bioinformatics of Genome Regulation and Structure Conference Series".

Published in:

2025

By:

Orlov, Yuriy L.;
Orlova, Nina G.;
Chen, Ming;
Kolchanov, Nikolay A.

Publication type:

Editorial

HIV-1 Tat: Molecular Switch in Viral Persistence and Emerging Technologies for Functional Cure.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6311, doi. 10.3390/ijms26136311

By:

Yu, Kaixin;
Liu, Hanxin;
Pan, Ting

Publication type:

Article

Regulation of Riboflavin Biosynthesis in Microorganisms and Construction of the Advanced Overproducers of This Vitamin.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6243, doi. 10.3390/ijms26136243

By:

Ruchala, Justyna;
Najdecka, Alicja;
Wojdyla, Dominik;
Liu, Wen;
Sibirny, Andriy

Publication type:

Article

Post-Transcriptional Regulation of the MiaA Prenyl Transferase by CsrA and the Small RNA CsrB in Escherichia coli.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6068, doi. 10.3390/ijms26136068

By:

Aubee, Joseph I.;
Williams, Kinlyn;
Adigun, Alexandria;
Olusanya, Olufolakemi;
Nurse, Jalisa;
Thompson, Karl M.

Publication type:

Article

Genome-Wide Identification and Expression Profiling of SlGeBP Gene Family in Response to Hormone and Abiotic Stresses in Solanum lycopersicum L.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6008, doi. 10.3390/ijms26136008

By:

Cao, Haohao;
Wang, Danfeng;
Li, Xiaoli;
Zhang, Yi;
Su, Deding;
Lu, Wang;
Xu, Kedong;
Li, Zhengguo

Publication type:

Article

Global changes in synthesis rates and mRNA stabilities during adaptive responses to cell wall stress in yeast.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-08815-4

By:

García-Martínez, José;
Rodríguez-Peña, Jose M.;
Pérez-Ortín, José E.;
Arroyo, Javier;
García, Raúl

Publication type:

Article

GIGYF2: A Multifunctional Regulator at the Crossroads of Gene Expression, mRNA Surveillance, and Human Disease.

Published in:

Cells (2073-4409), 2025, v. 14, n. 13, p. 1032, doi. 10.3390/cells14131032

By:

Zhao, Chen-Shuo;
Liu, Shu-Han;
Li, Zheng-Yang;
Chen, Jia-Yue;
Xiong, Xiang-Yang

Publication type:

Article

Advances of HDAC inhibitors in tumor therapy: potential applications through immune modulation.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1576781

By:

Tian, Jiaqi;
Han, Miaomiao;
Song, Fuyang;
Liu, Yun;
Shen, Yuhou;
Zhong, Jiateng

Publication type:

Article

棘胸蛙 Clock 基因克隆及其转录表达分析.

Published in:

Journal of Guangxi Normal University - Natural Science Edition, 2025, v. 43, n. 3, p. 201, doi. 10.16088/j.issn.1001-6600.2024041603

By:

袁鸿;
汪小冬;
魏秀英;
王加品;
陈以芳;
姚红艳;
陈敦学

Publication type:

Article

Recent advances and applications of mitochondria in tumors and inflammation.

Published in:

Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06722-w

By:

Liu, Hui;
Pan, Mengmeng;
Li, Yumeng;
Huang, Zhen;
Li, Hanying;
Zhang, Chenguang;
Guo, Chunlei;
Wang, Hui

Publication type:

Article

Nuclear p62/SQSTM1 facilitates ubiquitin-independent proteasomal degradation of BMAL1.

Published in:

PLoS Genetics, 2025, v. 21, n. 7, p. 1, doi. 10.1371/journal.pgen.1011794

By:

Zhang, Chenliang;
Wu, Quanyou;
Zhang, Huan;
Liu, RuiChen;
Li, Liping

Publication type:

Article

C.5 The generation of alternative transcripts as a method of regulating phosphorylation in Sonic Hedgehog (Shh) Subtype Medulloblastoma (MB).

Published in:

2025

By:

Ogawa, K;
Chahin, A;
Purzner, J;
Purzner, T

Publication type:

Abstract

Global identification and characterization of soybean TPR genes with expression analysis under photoperiod variations.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-10368-5

By:

Yu, Song;
Ren, Wenwen;
Song, Chengyang;
Wang, Yuxuan;
Fang, Yisheng;
Huang, Can;
Liu, Xiulin;
Zhang, Yifei;
Luo, Xiao

Publication type:

Article

Transcriptional repression of SOX2 by p53 in cancer cells regulates cell identity and migration.

Published in:

International Journal of Cancer, 2025, v. 157, n. 5, p. 980, doi. 10.1002/ijc.35490

By:

Lado‐Fernández, Patricia;
Vilas, Jéssica M.;
Fernandes, Tânia;
Carneiro, Carmen;
Da Silva‐Álvarez, Sabela;
Estévez‐Souto, Valentín;
Pedrosa, Pablo;
González‐Barcia, Miguel;
Abatti, Luis E.;
Mitchell, Jennifer A.;
Rivas, Carmen;
Moreno‐Bueno, Gema;
Vidal, Anxo;
Collado, Manuel

Publication type:

Article

DSS1 is required for proper Integrator–PP2A function.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61257-4

By:

Xu, Congling;
Zhou, Qian-Xing;
Zheng, Hai;
Song, Aixia;
Zhao, Wen-Ying;
Xu, Ting-Ting;
Xiong, Yan;
Zhang, Yi-Jie;
Huang, Zixuan;
Xu, Yanhui;
Cheng, Jingdong;
Chen, Fei Xavier

Publication type:

Article

A Cryptic CBFB Deletion–Inversion Expands the Mutational Spectrum of Variants Associated With Cleidocranial Dysplasia.

Published in:

Clinical Genetics, 2025, v. 108, n. 1, p. 86, doi. 10.1111/cge.14709

By:

Pagnamenta, Alistair T.;
Hashim, Mona;
Kennedy, Joanna;
Lawton, Beth;
Offiah, Amaka C.;
Taylor, Jenny C.;
Smithson, Sarah F.

Publication type:

Article

PWWP3A deficiency accelerates testicular senescence in aged mice.

Published in:

Andrology, 2025, v. 13, n. 5, p. 1236, doi. 10.1111/andr.13774

By:

Chen, Zhen;
Liu, Cong;
Qu, Wei;
Han, Yan;
Zhu, Xiaoyu;
Li, Zejia;
Ma, Dupeng;
Huang, Mengya;
Gong, Weihao;
Sun, Qi;
Lei, Junhao;
Guo, Rui;
Luo, Mengcheng

Publication type:

Article

Benchmarking the methods for predicting base pairs in RNA–RNA interactions Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf289

By:

Lang, Mei;
Litfin, Thomas;
Chen, Ke;
Zhan, Jian;
Zhou, Yaoqi

Publication type:

Article

The role of notch signaling pathway and non-coding RNAs in cancer and inflammation: progress, therapeutic insights, and future directions.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1567040

By:

Nie, Rong-Zu;
Wang, Hang;
Wang, Shuang-Shuang;
Chen, Chen;
Luo, Huo-Min;
Zhang, Hao-Kun;
Jing, Zhao-Hui;
Li, Pei-Feng

Publication type:

Article

The human cytomegalovirus-encoded pUS28 antagonizes CD4+ T cell recognition by targeting CIITA.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.96414

By:

Maassen, Fabienne;
Vu Thuy Khanh Le-Trilling;
Betke, Luisa;
Bracht, Thilo;
Siegmund, Corinna;
Bayer, Malte;
Katschinski, Benjamin;
Belter, Antonia;
Becker, Tanja;
Mennerich, Denise;
Voigt, Sebastian;
Frappier, Lori;
Sitek, Barbara;
Fleischhauer, Katharina;
Trilling, Mirko

Publication type:

Article

MdARF2‐mediated ABA signaling orchestrates malate biosynthesis and transport via repression of MdcyMDH and MdMATEL1 in apple.

Published in:

New Phytologist, 2025, v. 247, n. 3, p. 1263, doi. 10.1111/nph.70259

By:

Wang, Chu‐Kun;
Xiao, Fan;
Wei, Meng‐Meng;
Cheng, Lailiang;
Tsai, Yi‐Tser;
Du, Lian‐Da;
Piñeros, Miguel A.;
Gu, Kai‐Di;
Li, Ke;
Xiang, Ying;
Ma, Chang‐Ning;
Hu, Da‐Gang

Publication type:

Article

Echs1-mediated histone crotonylation facilitates zygotic genome activation and expression of repetitive elements in early mammalian embryos.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60565-z

By:

Wang, Yong-feng;
Wan, Yu-ting;
Qi, Qian-rong;
Tian, Qing;
Liu, Xin-mei;
Xie, Qing-zhen;
Yin, Ying;
Zhou, Li-quan

Publication type:

Article

Targeting super-enhancers in liver cancer: from pathogenic mechanisms to clinical applications.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1589455

By:

Li, Chang-Lei;
Yao, Zhi-Yuan;
Sun, Ao;
Cao, Jing-Yu;
Wang, Zu-Sen

Publication type:

Article

SOX9 expression in circulation and tumor site of lung cancer; diagnostic potential and demographic associations.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-025-10772-0

By:

Karami, Ali;
Safizadeh, Banafsheh;
Babaheidarian, Pegah;
Katiraee, Farzad;
Vaezi, Mohammad Amin;
Sadeh, Maryam;
Riahi, Taghi;
Tavakoli-Yaraki, Masoumeh

Publication type:

Article

Bromodomain and Extra-Terminal Family Proteins BRD2, BRD3, and BRD4 Contribute to H19-Dependent Transcriptional Regulation of Cell Adhesion Molecules, Modulating Metastatic Dissemination Program in Prostate Cancer.

Published in:

Non-Coding RNA, 2025, v. 11, n. 3, p. 33, doi. 10.3390/ncrna11030033

By:

Pecci, Valeria;
Borsa, Melissa;
Aiello, Aurora;
De Martino, Sara;
Cis, Luca;
Ripoli, Cristian;
Rotili, Dante;
Pierconti, Francesco;
Pinto, Francesco;
Grassi, Claudio;
Gaetano, Carlo;
Farsetti, Antonella;
Nanni, Simona

Publication type:

Article

OsbZIP40 and OsbZIP12 interact with OsMFT1 to repress Ehd1 expression and delay flowering in rice.

Published in:

Crop Journal (2095-5421), 2025, v. 13, n. 3, p. 705, doi. 10.1016/j.cj.2025.03.006

By:

Kunming Zhang;
Chuyan Chen;
Xiangbo Li;
Jiajia Yu;
Renyu Xu;
Xianfeng Li;
Ping Wang;
Jun Miao;
Wenchen Tan;
Zhiyun Gong;
Bahetibieke, Gulinaer;
Lei Ren;
Guohua Liang;
Yong Zhou

Publication type:

Article

Biosynthesis and Regulatory Mechanisms of Plant Flavonoids: A Review.

Published in:

Plants (2223-7747), 2025, v. 14, n. 12, p. 1847, doi. 10.3390/plants14121847

By:

Mao, Yuye;
Luo, Jiajia;
Cai, Zeping

Publication type:

Article

The R3-MYB Transcription Factor DcMYB56 Regulates Anthocyanin Accumulation by Activating the Expression of Anthocyanin Biosynthesis-Related Genes in Dendrobium candidum.

Published in:

Plants (2223-7747), 2025, v. 14, n. 12, p. 1805, doi. 10.3390/plants14121805

By:

Jia, Ning;
Ye, Wei;
Jiang, Jinlan;
Wang, Peiyu;
Liu, Jiqin

Publication type:

Article

Transcriptome and Metabolome Analyses of Taxus chinensis var. mairei Tissues Provide New Insights into the Regulation of Paclitaxel Biosynthesis.

Published in:

Plants (2223-7747), 2025, v. 14, n. 12, p. 1775, doi. 10.3390/plants14121775

By:

Jiang, Luyuan;
Li, Yanyan;
Jiang, Xiaoyang;
Shao, Fenjuan;
Wu, Wenli;
Xu, Fan;
Wilson, Iain;
Hoffman, Angela;
Yang, Yanfang;
Qiu, Deyou

Publication type:

Article

Lactylation in tumor: mechanisms and therapeutic potentials.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1609596

By:

Wang, Dandan;
Rong, Hao;
Ma, Ke;
Peng, Jun

Publication type:

Article

Computational analysis of circadian-rhythm dysregulated genes exhibiting undifferential expression in Oryza sativa.

Published in:

New Zealand Journal of Crop & Horticultural Science, 2025, v. 53, n. 4, p. 1191, doi. 10.1080/01140671.2024.2348144

By:

Ren, Yanjiao;
Li, Wei;
Gao, Yimeng;
Ma, Li;
Lan, Jie;
Huang, Lan;
Li, Kewei;
Fan, Yusi;
Liang, Yanchun;
Yu, Helong;
Zhou, Fengfeng

Publication type:

Article

TGF-β Receptor–dependent Tissue Factor Release and Proteomic Profiling of Extracellular Vesicles from Mechanically Compressed Human Bronchial Epithelial Cells.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2025, v. 73, n. 1, p. 88, doi. 10.1165/rcmb.2024-0130OC

By:

Mwase, Chimwemwe;
Schworer, Stephen A.;
Gilmore, Rodney C.;
Khan, Faria;
Dy, Alane Blythe C.;
Haber, Adam L.;
Boucher Jr., Richard C.;
Randell, Scott H.;
Mackman, Nigel;
Park, Jin-Ah

Publication type:

Article

Diphenylarsinic acid induced astrocyte-preferential cell-type-specific aberrant activation of signal transduction related to oxidative stress, MAP kinase activation, transcription factor regulation, and glutathione metabolism.

Published in:

Journal of Toxicological Sciences, 2025, v. 50, n. 6, p. 293, doi. 10.2131/jts.50.293

By:

Takayuki Negishi;
Daiki Yoshioka;
Ami Kajiura;
Daiki Suzuki;
Runa Tasaki;
Shoto Sasaki;
Takamasa Tsuzuki;
Kazunori Yukawa

Publication type:

Article

NSD proteins in anti-tumor immunity and their therapeutic targeting by protein degraders.

Published in:

Cellular & Molecular Life Sciences, 2025, v. 82, n. 1, p. 1, doi. 10.1007/s00018-025-05806-6

By:

Chava, Suresh;
Wajapeyee, Narendra

Publication type:

Article

bHLH291 Regulates Anthocyanin Accumulation in Kiwifruit Under Bagging Treatment.

Published in:

Horticulturae, 2025, v. 11, n. 6, p. 666, doi. 10.3390/horticulturae11060666

By:

Kang, Xin-Yun;
Zhang, Ke-Yu;
Tu, Mei-Yan;
Yin, Xue-Ren;
Wang, Wen-Qiu

Publication type:

Article

Weighted Gene Co-Expression Network Analysis Identifies Hub Genes Governing Resistance to Fusarium oxysporum f. sp. niveum in Watermelon (Citrullus lanatus).

Published in:

Horticulturae, 2025, v. 11, n. 6, p. 625, doi. 10.3390/horticulturae11060625

By:

Zhang, Chen;
Fang, Xufeng;
Zhang, Jing;
Wang, Xinying;
Liu, Zhao;
Liu, Shusen;
Song, Zhengfeng;
Gao, Peng;
Luan, Feishi

Publication type:

Article

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 3, p. 185, doi. 10.1038/nrmicro2261

By:

Dillon, Shane C.;
Dorman, Charles J.

Publication type:

Article

Pre-Steady-State Decoding of the Bicoid Morphogen Gradient.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 232, doi. 10.1371/journal.pbio.0050046

By:

Bergmann, Sven;
Sandler, Oded;
Sberro, Hila;
Shnider, Sara;
Schejter, Eyal;
Shilo, Ben-Zion;
Barkai, Naama

Publication type:

Article

Preparing for Transcription: The Role of Histone H2A.Z.

Published in:

PLoS Biology, 2005, v. 3, n. 12, p. e413, doi. 10.1371/journal.pbio.0030413

By:

Bradbury, Jane

Publication type:

Article

Gcn4p and Novel Upstream Activating Sequences Regulate Targets of the Unfolded Protein Response.

Published in:

PLoS Biology, 2004, v. 2, n. 8, p. 1, doi. 10.1371/journal.pbio.0020246

By:

Patil, Christopher K;
Li, Hao;
Walter, Peter

Publication type:

Article

Chlamydomonas cells transition through distinct Fe nutrition stages within 48 h of transfer to Fe-free medium.

Published in:

Photosynthesis Research, 2024, v. 161, n. 3, p. 213, doi. 10.1007/s11120-024-01103-8

By:

Liu, Helen W.;
Urzica, Eugen I.;
Gallaher, Sean D.;
Schmollinger, Stefan;
Blaby-Haas, Crysten E.;
Iwai, Masakazu;
Merchant, Sabeeha S.

Publication type:

Article