Works matching DE "GENE regulatory networks"
Results: 5000
Unveiling novel susceptibility genes and drug targets for basal cell carcinoma by a cross-tissue transcriptome-wide association study.
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- Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02019-y
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Identification and Experimental Verification of Potential Immune Cell-Associated Gene Biomarkers in Human Intervertebral Disc Degeneration.
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- Journal of Pain Research, 2025, v. 18, p. 993, doi. 10.2147/JPR.S505859
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- Article
Role of Aging in Ulcerative Colitis Pathogenesis: A Focus on ETS1 as a Promising Biomarker.
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- Journal of Inflammation Research, 2025, v. 18, p. 1839, doi. 10.2147/JIR.S504040
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Integration of Single Cell and Bulk RNA-Sequencing Reveals Key Genes and Immune Cell Infiltration to Construct a Predictive Model and Identify Drug Targets in Endometriosis.
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- Journal of Inflammation Research, 2025, v. 18, p. 2783, doi. 10.2147/JIR.S497643
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Identifying Therapeutic Targets and Potential Drugs for Diabetic Retinopathy: Focus on Oxidative Stress and Immune Infiltration.
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- Journal of Inflammation Research, 2025, v. 18, p. 2205, doi. 10.2147/JIR.S500214
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Identification of Five NK Cell-Related Hub Genes in COPD Using Single-Cell RNA Sequencing Analysis.
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- Journal of Inflammation Research, 2025, v. 18, p. 2169, doi. 10.2147/JIR.S491298
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Exploration of Hub Genes and Immune Cell Infiltration Characteristics Associated With Spinal Cord Injury in Mice.
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- Journal of Inflammation Research, 2025, v. 18, p. 2613, doi. 10.2147/JIR.S499402
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- Article
Chaihuang Qingfu Pills Protect Against Acute Pancreatitis—Associated Acute Lung Injury Through MMP9-NLRP3-Pyroptosis Pathway.
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- Journal of Inflammation Research, 2025, v. 18, p. 2317, doi. 10.2147/JIR.S501531
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Crotonylation-Related Prognostic Model of Esophageal Squamous Cell Carcinoma Based on Transcriptome Analysis and Single-Cell Sequencing Analysis.
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- International Journal of General Medicine, 2025, v. 18, p. 415, doi. 10.2147/IJGM.S493800
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Murine Model Insights: Identifying Dusp15 as a Novel Biomarker for Diabetic Cardiomyopathy Uncovered Through Integrated Omics Analysis and Experimental Validation.
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- Diabetes, Metabolic Syndrome & Obesity: Targets & Therapy, 2025, v. 18, p. 515, doi. 10.2147/DMSO.S501563
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Weighted Gene Coexpression Network Analysis Identifies Neutrophil-Related Molecular Subtypes and Their Clinical Significance in Gastric Cancer.
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- Cancer Management & Research, 2025, v. 17, p. 397, doi. 10.2147/CMAR.S500215
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SRC involves in lysosomal function and regulates ferroptosis in polycystic ovary syndrome.
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- Journal of Ovarian Research, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13048-025-01637-y
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- Article
Cross-validation for training and testing co-occurrence network inference algorithms: Cross-validation for training and testing co-occurrence network...: D. Agyapong et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06083-7
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Shared diagnostic biomarkers and underlying mechanisms between endometriosis and recurrent implantation failure.
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- Frontiers in Endocrinology, 2025, p. 1, doi. 10.3389/fendo.2025.1490746
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Integrated Network Analysis to Identify Key Modules and Potential Hub Genes Involved in Bovine Respiratory Disease: A Systems Biology Approach.
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- Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2021.753839
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- Article
New insights into the transcription factor regulatory networks driving peel coloration under hormone induction analyzed by transcriptomics and metabolomics in tangor 'Murcot'.
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- Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1526733
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- Article
Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress.
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- Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1511466
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- Article
Corrigendum: Construction of a circRNA–lincRNA–lncRNA–miRNA–mRNA ceRNA regulatory network identifies genes and pathways linked to goat fertility.
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- 2025
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- Correction Notice
Identification of cancer-associated fibroblast signature genes for prognostic prediction in colorectal cancer.
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- Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1476092
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- Article
Coding Genes Helped the Origination and Diversification of Intragenic MicroRNAs.
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- Molecular Biology & Evolution, 2025, v. 42, n. 2, p. 1, doi. 10.1093/molbev/msaf036
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- Article
Multi-omics analysis reveals the molecular mechanisms and therapeutic targets in high altitude polycythemia.
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- Annales de Biologie Clinique, 2025, v. 83, n. 1, p. 20, doi. 10.1684/abc.2025.1945
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Graph contrastive learning of subcellular-resolution spatial transcriptomics improves cell type annotation and reveals critical molecular pathways.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf020
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- Article
TRIAGE: an R package for regulatory gene analysis.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf004
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- Article
Predictive modelling of acute Promyelocytic leukaemia resistance to retinoic acid therapy.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf002
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- Article
Towards simplified graph neural networks for identifying cancer driver genes in heterophilic networks.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae691
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- Article
Online-adjusted evolutionary biclustering algorithm to identify significant modules in gene expression data.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae681
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- Article
CDCM: a correlation-dependent connectivity map approach to rapidly screen drugs during outbreaks of infectious diseases.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae659
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- Article
A self-attention-driven deep learning framework for inference of transcriptional gene regulatory networks.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae639
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- Article
BioDSNN: a dual-stream neural network with hybrid biological knowledge integration for multi-gene perturbation response prediction.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae617
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- Article
TriTan: an efficient triple nonnegative matrix factorization method for integrative analysis of single-cell multiomics data.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae615
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- Article
Identification of key genes and signaling pathway in the pathogenesis of Huntington's disease via bioinformatics and next generation sequencing data analysis.
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- Egyptian Journal of Medical Human Genetics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s43042-025-00660-4
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- Article
Modelling of miRNA-mRNA Network to Identify Gene Signatures with Diagnostic and Prognostic Value in Gastric Cancer: Evidence from In-Silico and In-Vitro Studies.
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- Reports of Biochemistry & Molecular Biology, 2024, v. 13, n. 2, p. 281, doi. 10.61186/rbmb.13.2.281
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- Article
Genetic factors underlying Mandibular prognathism: insights from recent human and animal studies.
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- Mammalian Genome, 2025, v. 36, n. 1, p. 293, doi. 10.1007/s00335-024-10084-x
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- Article
Modeling hydraulic jump roller length on rough beds: a comparative study of ANN and GEP models.
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- Umm Al-Qura University Journal of Engineering & Architecture (Springer Nature), 2025, v. 16, n. 1, p. 111, doi. 10.1007/s43995-024-00093-x
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- Article
Comprehensive analysis of immunogenic cell death-related genes in liver ischemia-reperfusion injury.
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- Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1545185
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- Article
Construction of a circRNA– lincRNA–lncRNA–miRNA–mRNA ceRNA regulatory network identifies genes and pathways linked to goat fertility.
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- Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2023.1195480
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- Article
Neural Network Moment Closure Method for Markovian Gene Expression Modeling.
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- Journal of East China University of Science & Technology, 2025, v. 51, n. 1, p. 70, doi. 10.14135/j.cnki.1006-3080.20240227001
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- Article
STModule: identifying tissue modules to uncover spatial components and characteristics of transcriptomic landscapes.
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- Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01441-9
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- Article
Transcriptome analyses for revealing leaf abscission of Cyclocarya paliurus stem segments in vitro.
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- BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11394-3
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- Article
Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data.
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- Molecular Systems Biology, 2025, v. 21, n. 3, p. 214, doi. 10.1038/s44320-025-00088-3
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- Article
Regulatory variation controlling architectural pleiotropy in maize.
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- Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-56884-w
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- Article
心肌梗死患者细胞焦亡相关基因的表达水平及临床意义.
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- Progress in Modern Biomedicine, 2025, v. 25, n. 2, p. 372, doi. 10.13241/j.cnki.pmb.2025.02.022
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- Article
阿尔茨海默病患者海马中与学习记忆相关的枢纽基因鉴定 及机制分析.
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- Progress in Modern Biomedicine, 2025, v. 25, n. 1, p. 174, doi. 10.13241/j.cnki.pmb.2025.01.025
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- Article
Mutagenicity and carcinogenicity prediction of sugar substitutes: an in silico approach with compound-gene interactions network.
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- Toxicology Research, 2025, v. 14, n. 1, p. 1, doi. 10.1093/toxres/tfaf008
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- Article
Bioinformatics analysis of shared biomarkers and immune pathways of preeclampsia and periodontitis.
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- BMC Pregnancy & Childbirth, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12884-025-07277-w
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- Article
Comparative transcriptome analysis reveals potential regulatory genes involved in the development and strength formation of maize stalks.
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- BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06276-5
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- Article
Screening of common genomic biomarkers to explore common drugs for the treatment of pancreatic and kidney cancers with type-2 diabetes through bioinformatics analysis.
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- Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-91875-3
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- Article
An Integration of RNA Sequencing and Network Pharmacology Approaches Predicts the Molecular Mechanisms of the Huo-Xue-Shen Formula in the Treatment of Liver Fibrosis.
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- Pharmaceuticals (14248247), 2025, v. 18, n. 2, p. 227, doi. 10.3390/ph18020227
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- Article
Unveiling Racial Disparities in Localized Prostate Cancer: A Systems-Level Exploration of the lncRNA Landscape.
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- Genes, 2025, v. 16, n. 2, p. 229, doi. 10.3390/genes16020229
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- Article
Identification and Expression Patterns of Critical Genes Related to Coat Color in Cashmere Goats.
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- Genes, 2025, v. 16, n. 2, p. 222, doi. 10.3390/genes16020222
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- Article