Works about GENE ontology

Results: 5000

GOBoost: leveraging long-tail gene ontology terms for accurate protein function prediction Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf267

By:

Zhang, Lei;
Wang, Yang;
Chen, Xiao;
Hou, Jie;
Si, Dong;
Ding, Rui;
Jiang, Bo;
Ledenko, Hailey;
Cao, Renzhi

Publication type:

Article

The signed two-space proximity model for learning representations in protein–protein interaction networks Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf204

By:

Nakis, Nikolaos;
Kosma, Chrysoula;
Brativnyk, Anastasia;
Chatzianastasis, Michail;
Evdaimon, Iakovos;
Vazirgiannis, Michalis

Publication type:

Article

HIF-1α and HIF-2α: synergistic regulation of glioblastoma malignant progression during hypoxia and apparent chemosensitization in response to hyperbaric oxygen.

Published in:

Cancer Cell International, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12935-025-03823-w

By:

Wang, Pan;
Gong, Sheng;
Liao, Bin;
Liu, Jie;
Zhao, Lu;
Wu, Nan

Publication type:

Article

Hsa_circ_0016662 acts as a prognostic biomarker and promotes the progression of hepatocellular carcinoma via autophagy regulation.

Published in:

Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06763-1

By:

Deng, Ganlu;
He, Youwu;
Gan, Binliang;
Liao, Chuanjie;
Luo, Xinning;
Zheng, Chunmei;
Mao, Linfeng

Publication type:

Article

Genome-wide epistasis analysis reveals significant epistatic signals associated with Parkinson's disease risk.

Published in:

Brain: A Journal of Neurology, 2025, v. 148, n. 6, p. 2060, doi. 10.1093/brain/awae398

By:

Cisterna-Garcia, Alejandro;
Bustos, Bernabe I;
Bandres-Ciga, Sara;
Leal, Thiago P;
Sarihan, Elif I;
Jok, Christie;
Krainc, Dimitri;
Mata, Ignacio F;
Lubbe, Steven J;
Botia, Juan A

Publication type:

Article

Atractylenolide I inhibits the growth, proliferation and migration of B16 melanoma cells via the PI3K/AKT/mTOR pathway.

Published in:

Oncology Letters, 2025, v. 30, n. 2, p. N.PAG, doi. 10.3892/ol.2025.15118

By:

Xu, Xiaochun;
Kang, Ping;
Che, Hong

Publication type:

Article

Identification of Ferroptosis -Related Genes in MAFLD/MASH and HQHF Validation.

Published in:

Hepatic Medicine: Evidence & Research, 2025, v. 17, p. 13, doi. 10.2147/HMER.S509778

By:

Liu, Sutong;
Zhang, Lihui;
Xu, Junjiao;
Zhao, Qing;
Shang, Dongfang;
Liu, Xiaoyan;
Zhang, Qiang;
Liu, Minghao;
Zhao, Wenxia

Publication type:

Article

Brexpiprazole augmentation and mitochondrial gene expression changes in major depressive disorder.

Published in:

Journal of Psychopharmacology, 2025, v. 39, n. 6, p. 603, doi. 10.1177/02698811251337365

By:

Kondo, Kohei;
Yoshino, Yuta;
Kumon, Hiroshi;
Okano, Mariko;
Mori, Hiroaki;
Iga, Jun-ichi;
Ueno, Shu-ichi

Publication type:

Article

Integrated genetic analysis of Alzheimer's disease and stroke subtypes: insights from LDSC, PLACO, and MR studies.

Published in:

BMC Neurology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12883-025-04278-2

By:

Long, Yu;
Liu, Jinfeng;
Guo, Jinniu;
Jiang, Jinzhao;
Wang, Xiangyu;
Sun, Ruohan

Publication type:

Article

Structural Changes in Gene Ontology Reveal Modular and Complex Representations of Biological Function Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 6, p. 1, doi. 10.1093/molbev/msaf148

By:

Valverde, Sergi;
Vidiella, Blai;
Martínez-Redondo, Gemma I;
Duran-Nebreda, Salva;
Fernández, Rosa;
Bombarely, Aureliano;
Rojas, Ana M;
Bentley, R Alexander

Publication type:

Article

Mechanism of Protective Effect of Mongolia Medicine Nagab-9 on LPS-Induced Acute Lung Injury Based on an Integrated Network Pharmacology and Experimental Verification.

Published in:

Dose-Response, 2025, v. 23, n. 2, p. 1, doi. 10.1177/15593258251329989

By:

Liu, Shi;
Yu, Jiuwang;
Chen, Zeyu;
Bao, Lidao

Publication type:

Article

Wozu und wie bekommt unser FID ein Fachvokabular?

Published in:

ABI Technik, 2020, v. 40, n. 4, p. 396, doi. 10.1515/abitech-2020-2041

By:

Arndt, Susanne

Publication type:

Article

Comprehensive transcriptome profiling of Caragana microphylla in response to salt condition using de novo assembly.

Published in:

Biotechnology Letters, 2021, v. 43, n. 1, p. 317, doi. 10.1007/s10529-020-03022-9

By:

Kim, Sujung;
Na, Jungup;
Nie, Hualin;
Kim, Jiseong;
Lee, Jeongeun;
Kim, Sunhyung

Publication type:

Article

Identifying novel host-based diagnostic biomarker panels for COVID-19: a whole-blood/nasopharyngeal transcriptome meta-analysis.

Published in:

Molecular Medicine, 2022, v. 28, n. 1, p. 1, doi. 10.1186/s10020-022-00513-5

By:

Maleknia, Samaneh;
Tavassolifar, Mohammad Javad;
Mottaghitalab, Faezeh;
Zali, Mohammad Reza;
Meyfour, Anna

Publication type:

Article

In Vitro and Vivo Experiments Revealing Astragalin Inhibited Lung Adenocarcinoma Development via LINC00582/miR‐140‐3P/PDPK1.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 12, p. 1, doi. 10.1002/jbt.70042

By:

Bai, Juncheng;
Chen, Yuxin;
Zhao, Geyu;
Gui, Rong

Publication type:

Article

Sub‐acute bisphenol A exposure induces proteomic alterations and impairs male reproductive health in mice.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 10, p. 1, doi. 10.1002/jbt.23862

By:

Yadav, Shiv K.;
Kumar, Arvind;
Yadav, Bal G.;
Bijalwan, Vandana;
Yadav, Suresh;
Patil, Gajanan P.;
Sarkar, Kamalesh;
Palkhade, Rajendra;
Das, Santasabuj;
Singh, Dhirendra P.

Publication type:

Article

NSUN6 mediates 5‐methylcytosine modification of METTL3 and promotes colon adenocarcinoma progression.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 6, p. 1, doi. 10.1002/jbt.23749

By:

Cui, Yuanbo;
Lv, Pengju;
Zhang, Chunyan

Publication type:

Article

Enterotoxin‐related genes PPFIA4 and SCN3B promote colorectal cancer development and progression.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 6, p. 1, doi. 10.1002/jbt.23746

By:

Zheng, Feng‐Xian;
Yang, Cheng‐Rui;
Sun, Fang‐Yuan;
Zhang, Yan‐Zhong;
Wang, Yan‐Liang;
Li, Xu‐Zhao;
Wu, Xiao‐Yong

Publication type:

Article

A prognostic signature of fatty acid metabolism-related genes for predicting survival of gastric cancer patients.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 4, p. 1, doi. 10.1002/jbt.23687

By:

Bochao Zhao;
Wei Jiang;
Jingchao Wang;
Guannan Sheng;
Yiming Wang;
Kewei Meng;
Tao Yang

Publication type:

Article

Excess iron accumulation mediated senescence in diabetic kidney injury.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 4, p. 1, doi. 10.1002/jbt.23683

By:

Xueer Cheng;
Yanyan Li;
Li Chen;
Chunjie Jiang;
Shufen Peng;
Ping Yao;
Yuhan Tang

Publication type:

Article

Deletion of autophagy related, ATG1 and F‐box motif encoding YDR131C, together, lead to synthetic growth defects and flocculation behavior in Saccharomyces cerevisiae.

Published in:

Journal of Biochemical & Molecular Toxicology, 2022, v. 36, n. 7, p. 1, doi. 10.1002/jbt.23064

By:

Shoket, Heena;
Parvez, Sadia;
Sharma, Meenu;
Pandita, Monika;
Sharma, Vishali;
Kumar, Prabhat;
Bairwa, Narendra K.

Publication type:

Article

Candidate genes mediated by estrogen‐related receptor γ in pancreatic β cells.

Published in:

Journal of Biochemical & Molecular Toxicology, 2019, v. 33, n. 10, p. N.PAG, doi. 10.1002/jbt.22390

By:

Lei, Zhou;
JunHui, Lv;
PeiFeng, Li

Publication type:

Article

Exploring the genetic components and multi-omics sources of inflammatory bowel disease from the perspective of autoimmune disorders.

Published in:

Clinical Rheumatology, 2025, v. 44, n. 6, p. 2527, doi. 10.1007/s10067-025-07422-y

By:

Wang, Zhonghai;
Chen, Xin;
Zhang, Quan-Bo;
Wang, Han

Publication type:

Article

IFI27, a potential candidate molecular marker for primary Sjogren's syndrome.

Published in:

Clinical Rheumatology, 2025, v. 44, n. 5, p. 1949, doi. 10.1007/s10067-025-07409-9

By:

Yang, Yiying;
Zhang, Ying;
Liu, Ke;
Liu, Meidong;
Zhang, Huali;
Guo, Muyao

Publication type:

Article

Bioinformatics analysis and identification of hub genes of neutrophils in Kawasaki disease: a pivotal study.

Published in:

Clinical Rheumatology, 2023, v. 42, n. 11, p. 3089, doi. 10.1007/s10067-023-06636-2

By:

Tang, Yunjia;
Yang, Daoping;
Ma, Jin;
Wang, Nana;
Qian, Weiguo;
Wang, Bo;
Qin, Yiming;
Lu, Meihua;
Lv, Haitao

Publication type:

Article

Bioinformatic identification and validation of autophagy-related genes in rheumatoid arthritis.

Published in:

Clinical Rheumatology, 2023, v. 42, n. 3, p. 741, doi. 10.1007/s10067-022-06399-2

By:

Fan, Dan-dan;
Tan, Peng-yu;
Jin, Li;
Qu, Yuan;
Yu, Qing-hong

Publication type:

Article

Predictors of response of rituximab in rheumatoid arthritis by weighted gene co-expression network analysis.

Published in:

Clinical Rheumatology, 2023, v. 42, n. 2, p. 529, doi. 10.1007/s10067-022-06438-y

By:

Zhang, Shan;
Li, Peiting;
Wu, Pengjia;
Yang, Lei;
Liu, Xiaoxia;
Liu, Jun;
Zhang, Yong;
Zeng, Jiashun

Publication type:

Article

Identification of key genes and pathways associated with sex differences in rheumatoid arthritis based on bioinformatics analysis.

Published in:

Clinical Rheumatology, 2023, v. 42, n. 2, p. 399, doi. 10.1007/s10067-022-06387-6

By:

Wang, Tingting;
Zeng, Fanxin;
Li, Xue;
Wei, Yuanli;
Wang, Dongmei;
Zhang, Weihua;
Xie, Huanhuan;
Wei, Lingli;
Xiong, Siying;
Liu, Caizhen;
Li, Shilin;
Wu, Jianhong

Publication type:

Article

Analyzing the gene regulatory network in hepatitis B patients by single-cell ATAC sequencing.

Published in:

Clinical Rheumatology, 2022, v. 41, n. 11, p. 3513, doi. 10.1007/s10067-022-06310-z

By:

Xu, Huixuan;
Yu, Haiyan;
Zheng, Fengping;
Zhang, Cantong;
Cai, Wanxia;
Zhang, Xinzhou;
Tang, Donge;
Dai, Yong

Publication type:

Article

Exploration of the pathogenesis of Sjögren's syndrome via DNA methylation and transcriptome analyses.

Published in:

Clinical Rheumatology, 2022, v. 41, n. 9, p. 2765, doi. 10.1007/s10067-022-06200-4

By:

Du, Yu;
Li, Jie;
Wu, Jianhong;
Zeng, Fanxin;
He, Chengsong

Publication type:

Article

Coexpression network analysis coupled with connectivity map database mining reveals novel genetic biomarkers and potential therapeutic drugs for polymyositis.

Published in:

Clinical Rheumatology, 2022, v. 41, n. 6, p. 1719, doi. 10.1007/s10067-021-06035-5

By:

Wang, Kai;
Zhu, Rujie;
Li, Ju;
Zhang, Zhongyuan;
Wen, Xin;
Chen, Hongwei;
Sun, Lingyun

Publication type:

Article

Bioinformatics analyses of gene expression profile identify key genes and functional pathways involved in cutaneous lupus erythematosus.

Published in:

Clinical Rheumatology, 2022, v. 41, n. 2, p. 437, doi. 10.1007/s10067-021-05913-2

By:

Gao, Zhen-yu;
Su, Lin-chong;
Wu, Qing-chao;
Sheng, Jiao-e;
Wang, Yun-long;
Dai, Yu-fang;
Chen, An-ping;
He, San-shan;
Huang, Xia;
Yan, Guo-qing

Publication type:

Article

Identification of differentially expressed genes in synovial tissue of osteoarthritis based on a more robust integrative analysis method.

Published in:

Clinical Rheumatology, 2021, v. 40, n. 9, p. 3745, doi. 10.1007/s10067-021-05649-z

By:

Chen, Haitao;
Ni, Qubo;
Li, Bin;
Chen, Liaobin

Publication type:

Article

Identification of hub genes and therapeutic drugs in rheumatoid arthritis patients.

Published in:

Clinical Rheumatology, 2021, v. 40, n. 8, p. 3299, doi. 10.1007/s10067-021-05650-6

By:

Wu, Bo;
He, Yang;
Yang, Dan;
Liu, Ru-xi

Publication type:

Article

Identification of abnormally methylated–differentially expressed genes and pathways in osteoarthritis: a comprehensive bioinformatic study.

Published in:

Clinical Rheumatology, 2021, v. 40, n. 8, p. 3247, doi. 10.1007/s10067-020-05539-w

By:

Zheng, Linli;
Chen, Weishen;
Xian, Guoyan;
Pan, Baiqi;
Ye, Yongyu;
Gu, Minghui;
Ma, Yinyue;
Zhang, Ziji;
Sheng, Puyi

Publication type:

Article

Distinct gene network in skin lesion of patients with diffuse cutaneous systemic sclerosis.

Published in:

2020

By:

Inamo, Jun

Publication type:

Letter

T peripheral helper cells signature genes in patients with rheumatoid arthritis.

Published in:

2020

By:

Inamo, Jun

Publication type:

Letter

Bioinformatics identification of key candidate genes and pathways associated with systemic lupus erythematosus.

Published in:

Clinical Rheumatology, 2020, v. 39, n. 2, p. 425, doi. 10.1007/s10067-019-04751-7

By:

Yang, Fangyuan;
Zhai, Zeqing;
Luo, Xiaoqing;
Luo, Guihu;
Zhuang, Lili;
Zhang, Yanan;
Li, Yehao;
Sun, Erwei;
He, Yi

Publication type:

Article

Genetic repression of the antioxidant enzymes reduces the lifespan in Drosophila melanogaster.

Published in:

Journal of Comparative Physiology B: Biochemical, Systemic & Environmental Physiology, 2022, v. 192, n. 1, p. 1, doi. 10.1007/s00360-021-01412-7

By:

Deepashree, S.;
Shivanandappa, T.;
Ramesh, Saraf R.

Publication type:

Article

The gene expression profile of resistant and susceptible Bombyx mori strains reveals cypovirus-associated variations in host gene transcript levels.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 12, p. 5175, doi. 10.1007/s00253-015-6634-x

By:

Guo, Rui;
Wang, Simei;
Xue, Renyu;
Cao, Guangli;
Hu, Xiaolong;
Huang, Moli;
Zhang, Yangqi;
Lu, Yahong;
Zhu, Liyuan;
Chen, Fei;
Liang, Zi;
Kuang, Sulan;
Gong, Chengliang

Publication type:

Article

Characterization of the rumen microbiome of Indian Kankrej cattle ( Bos indicus) adapted to different forage diet.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 23, p. 9749, doi. 10.1007/s00253-014-6153-1

By:

Patel, Vilas;
Patel, Amrutlal;
Parmar, Nidhi;
Patel, Anand;
Reddy, Bhaskar;
Joshi, Chaitanya

Publication type:

Article

High-throughput RNA sequencing identifies the miRNA expression profile, target genes, and molecular pathways contributing to growth of sporadic vestibular schwannomas.

Published in:

Acta Neurochirurgica, 2024, v. 166, n. 1, p. 1, doi. 10.1007/s00701-024-05984-5

By:

Litwiniuk-Kosmala, Małgorzata;
Makuszewska, Maria;
Niemczyk, Kazimierz;
Bartoszewicz, Robert;
Wojtas, Bartosz;
Gielniewski, Bartłomiej

Publication type:

Article

Upregulated Genes in Atrial Fibrillation Blood and the Left Atrium.

Published in:

Cardiology, 2024, v. 149, n. 4, p. 357, doi. 10.1159/000537923

By:

Kamihara, Takahiro;
Kinoshita, Tomoyasu;
Kawano, Reo;
Tanaka, Seiya;
Toda, Ayano;
Ohara, Fumiya;
Hirashiki, Akihiro;
Kokubo, Manabu;
Shimizu, Atsuya

Publication type:

Article

牛 miR-155 靶基因预测及其组织表达分析.

Published in:

China Herbivore Science, 2025, v. 45, n. 1, p. 11, doi. 10.3969/j.issn.2095-3887.2024.00.114

By:

何学亮;
徐俊杰;
姬小云;
丁燕玲;
曲畅;
周小南;
梁嘉豪;
魏大为;
史远刚;
康晓龙

Publication type:

Article

伊犁马与哈萨克马背最长肌脂质代谢与转录组分析.

Published in:

China Herbivore Science, 2024, v. 44, n. 6, p. 19, doi. 10.3969/j.issn.2095-3887.2024.00.099

By:

黄高齐;
左林芳;
李若婵;
程雪;
任万路;
孟军;
姚新奎;
曾亚琦;
王建文

Publication type:

Article

Transcriptomic analysis of asymptomatic and symptomatic severe Turkish patients in SARS-CoV-2 infection.

Published in:

Northern Clinics of Istanbul, 2022, v. 9, n. 2, p. 122, doi. 10.14744/nci.2022.28000

By:

Pence, Sadrettin;
Caykara, Burcu;
Pence, Halime Hanim;
Tekin, Saban;
Keskin, Birsen Cevher;
Uncu, Ali Tevfik;
Uncu, Ayse Ozgur;
Ozturk, Erman

Publication type:

Article

Bioinformatics insights into transcriptomic biomarkers for atopic dermatitis.

Published in:

Journal of Research in Pharmacy, 2025, v. 29, n. 3, p. 892, doi. 10.12991/jrespharm.1693724

By:

ADIKUSUMA, Wirawan;
MUGIYANTO, Eko;
IRHAM, Lalu Muhammad;
FIRDAYANI, Firdayani;
LISTIANA, Shelvi;
IRESHA, Muthia Rahayu;
MASYITA, Ayu;
MAZAYA, Maulida;
ALFIAN, Riza

Publication type:

Article

Annotating protein functions via fusing multiple biological modalities.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07411-y

By:

Ma, Wenjian;
Bi, Xiangpeng;
Jiang, Huasen;
Wei, Zhiqiang;
Zhang, Shugang

Publication type:

Article

Transcriptomic responses involved in enhanced production of hypocrellin A by addition of Triton X-100 in submerged cultures of Shiraia bambusicola.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2017, v. 44, n. 10, p. 1415, doi. 10.1007/s10295-017-1965-5

By:

Lei, Xiu;
Zhang, Ming;
Ma, Yan;
Wang, Jian

Publication type:

Article

Comparative transcriptomic analysis reveals novel genes and regulatory mechanisms of Tetragenococcus halophilus in response to salt stress.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2015, v. 42, n. 4, p. 601, doi. 10.1007/s10295-014-1579-0

By:

Liu, Licui;
Si, Lifang;
Meng, Xin;
Luo, Lixin

Publication type:

Article