Works matching DE "GENE ontology"

Results: 5000

Time-course transcriptome landscape of achene development in lettuce.

Published in:

Horticulture Plant Journal, 2022, v. 8, n. 1, p. 99, doi. 10.1016/j.hpj.2021.06.003

By:

Chen Luo;
Shenglin Wang;
Kang Ning;
Zijing Chen;
Jingjing Yang;
Yixin Wang;
Meixia Qi;
Qian Wang

Publication type:

Article

The alteration of IL-17 signaling pathway in bipolar disorder: a preliminary study with transcriptomic perspective.

Published in:

Frontiers in Psychiatry, 2025, p. 1, doi. 10.3389/fpsyt.2025.1539038

By:

Wang, Xiaobo;
Yu, Su;
Gao, Zhen;
Xu, Fangming;
Wang, Yumei;
Zhang, Tianle;
Xie, Tingting;
Jia, Xihua

Publication type:

Article

Cellular hierarchy framework based on single-cell and bulk RNA sequencing reveals fatty acid metabolic biomarker MYDGF as a therapeutic target for ccRCC.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1615601

By:

Wang, Ning;
Xu, Ziyu;
Zhang, Lina;
Lu, Yanfang;
Wang, Yanliang;
Yan, Lei;
Cao, Huixia;
Wang, Limeng;
Shao, Fengmin

Publication type:

Article

Integrated machine learning and single-cell RNA sequencing reveal COL4A2 and CXCL6 as oxidative stress-associated biomarkers in periodontitis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1598642

By:

Sun, Siyu;
Ren, Jing;
Zeng, Xiujuan;
Chen, Yanbin;
Zhou, Qianbing;
Yang, Junying;
Chen, Shan

Publication type:

Article

Proteome-wide association studies using summary pQTL data of brain, CSF, and plasma identify 30 risk genes of Alzheimer's disease dementia.

Published in:

Alzheimer's Research & Therapy, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13195-025-01774-y

By:

Hu, Tingyang;
Liu, Qiang;
Dai, Qile;
Buchman, Aron S.;
Bennett, David A.;
Tasaki, Shinya;
Wang, Yanling;
Seyfried, Nicholas T.;
De Jager, Philip L.;
Epstein, Michael P.;
Yang, Jingjing

Publication type:

Article

ProtNote: a multimodal method for protein–function annotation Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btaf170

By:

Char, Samir;
Corley, Nathaniel;
Alamdari, Sarah;
Yang, Kevin K;
Amini, Ava P

Publication type:

Article

Bioinformatics insights into transcriptomic biomarkers for atopic dermatitis.

Published in:

Journal of Research in Pharmacy, 2025, v. 29, n. 3, p. 892, doi. 10.12991/jrespharm.1693724

By:

ADIKUSUMA, Wirawan;
MUGIYANTO, Eko;
IRHAM, Lalu Muhammad;
FIRDAYANI, Firdayani;
LISTIANA, Shelvi;
IRESHA, Muthia Rahayu;
MASYITA, Ayu;
MAZAYA, Maulida;
ALFIAN, Riza

Publication type:

Article

基于比较转录组学揭示青海湖裸鲤耐盐碱关键基因和潜在作用机制.

Published in:

Journal of Dalian Ocean University, 2025, v. 40, n. 2, p. 223, doi. 10.16535/j.cnki.dlhyxb.2024-200

By:

严青春;
李长忠;
王丽楠;
杨颖;
李昭楠;
梁天秀;
金文杰;
陈艳霞

Publication type:

Article

TMEM14A Gene Affects Hippocampal Sclerosis in Mesial Temporal Lobe Epilepsy.

Published in:

Journal of Clinical Medicine, 2025, v. 14, n. 11, p. 3810, doi. 10.3390/jcm14113810

By:

Kim, Joonho;
Cho, Soomi;
Jeong, Kyoung Hoon;
Ha, Woo-Seok;
Kim, Kyung Min;
Chu, Min Kyung;
Lee, Ji Hyun;
Kim, Sangwoo;
Kim, Won-Joo

Publication type:

Article

Analysis of variant interactions in families with autism points to genes involved in the development of the central nervous system.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0326022

By:

Kaczyński, Jacek;
Pasenkiewicz-Gierula, Marta

Publication type:

Article

Root Transcriptome Analysis Identifies Salt-Tolerance Genes in Sweet Corn Chromosome Segment Substitution Lines (CSSLs).

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1687, doi. 10.3390/plants14111687

By:

Zhang, Zili;
Duan, Xuxuan;
Liu, Pengfei;
Chen, Qingchun;
Sun, Wei;
Wan, Xiaorong;
Zheng, Yixiong;
Lin, Jianting;
Jiang, Feng;
Feng, Faqiang

Publication type:

Article

Deciphering the Overlapping Immune Mechanism Between Depression and Breast Cancer.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5229, doi. 10.3390/ijms26115229

By:

Ma, Yiming;
Ming, Yu;
Hou, Zhiyong;
Yu, Yanan;
Liu, Jun;
Wang, Zhong

Publication type:

Article

Transcriptomic Analysis Under Drought and Salt Stress Provides Insight into Genes Putatively Involved in Ginsenoside Biosynthesis in Panax japonicus Meyer.

Published in:

Biochemical Genetics, 2025, v. 63, n. 3, p. 2698, doi. 10.1007/s10528-024-10845-y

By:

Zhou, Jiangbo;
Li, Jing;
Liang, E.;
Qi, Minjie;
Huang, Yuanshe;
Zhang, Lai

Publication type:

Article

Study on the potential hypoglycemic flavonoids in Abrus precatorius leaves: purification process, quality profile and activity mechanisms by transcriptomics and network pharmacology.

Published in:

Natural Product Research, 2025, v. 39, n. 12, p. 3504, doi. 10.1080/14786419.2024.2340756

By:

Yuan, Xujiang;
Xue, Xianmei;
Liang, Zhike;
He, Cuimin

Publication type:

Article

Single cell sequencing revealed parathyroid oxyphil cells are involved in osteoporosis under primary hyperparathyroidism.

Published in:

Frontiers in Endocrinology, 2025, p. 1, doi. 10.3389/fendo.2025.1603955

By:

Zhang, Xinguo;
Bai, Ruifeng;
Li, Minjuan;
Li, Zhigang;
Zhao, Xian;
Cao, Renwei;
Tan, Shen;
Cheng, Kaiyuan;
Zha, Yejun;
Jiang, Xieyuan;
Lu, Shuai

Publication type:

Article

Exploring the genetic components and multi-omics sources of inflammatory bowel disease from the perspective of autoimmune disorders.

Published in:

Clinical Rheumatology, 2025, v. 44, n. 6, p. 2527, doi. 10.1007/s10067-025-07422-y

By:

Wang, Zhonghai;
Chen, Xin;
Zhang, Quan-Bo;
Wang, Han

Publication type:

Article

Dynamic changes in gene expression through aging in Drosophila melanogaster heads Open Access.

Published in:

G3: Genes | Genomes | Genetics, 2025, v. 15, n. 4, p. 1, doi. 10.1093/g3journal/jkaf039

By:

Hanson, Katherine M;
Macdonald, Stuart J

Publication type:

Article

Ferroptosis-related gene signature-based subtype identification of triple-negative breast cancer to prioritize treatment strategies.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1541119

By:

Chen, Yongzhen;
Huang, Xiaoying;
Wang, Junqi;
Hu, Chao;
Zheng, Yanan;
Wang, Yumeng;
Zheng, Shuqian;
Ji, Guozhong;
You, Qiang

Publication type:

Article

Transcriptomic dysregulation in zebrafish brain exposed to artificial light at night: a comprehensive analysis of gene expression and pathway alterations.

Published in:

Biological Rhythm Research, 2025, v. 56, n. 6, p. 431, doi. 10.1080/09291016.2025.2464687

By:

Labala, Rajendra Kumar;
Khan, Zeeshan Ahmad;
Mondal, Gopinath;
Hazra, Subhajit;
Banerjee, Bidisha;
Dan, Abhijit;
Chattoraj, Asamanja

Publication type:

Article

Bioinformatics-Guided Experimental Validation Identifies NQO1 as a Senescence-Ferroptosis Hub in Liver Fibrosis.

Published in:

Biomedicines, 2025, v. 13, n. 5, p. 1249, doi. 10.3390/biomedicines13051249

By:

Zhang, Xinying;
Fu, Chunmeng;
Yang, Ziyue;
Tan, Yue;
Li, Huan;
Zhang, Xiangqian;
Chen, Mengru;
Peng, Fang;
Li, Ning

Publication type:

Article

Machine Learning-Driven Transcriptome Analysis of Keratoconus for Predictive Biomarker Identification.

Published in:

Biomedicines, 2025, v. 13, n. 5, p. 1032, doi. 10.3390/biomedicines13051032

By:

Chang, Shao-Hsuan;
Yeh, Lung-Kun;
Hung, Kuo-Hsuan;
Chiu, Yen-Jung;
Hsieh, Chia-Hsun;
Ma, Chung-Pei

Publication type:

Article

甘蓝型油菜BnaC3.CCD4 转基因白花株系白天花色变化的转录组分析.

Published in:

Chinese Journal of Oil Crop Sciences, 2025, v. 47, n. 1, p. 45, doi. 10.19802/j.issn.1007-9084.2023278

By:

王锦婷;
孙雪雨;
胡文竞;
杨谦;
刘超

Publication type:

Article

Key Ferroptosis Genes and their Predictive and Diagnostic Value in Fanconi Anemia.

Published in:

Physiological Research, 2025, v. 74, n. 2, p. 275, doi. 10.33549/physiolres.935383

By:

Can MENG;
Li HUANG;
Hui HUANG;
Zhenyu ZHAO;
Xiangjun FU;
Hongxia YAO;
Bin WU

Publication type:

Article

双酚 S 和双酚 F 对雄性生殖系统损伤信号通路的生物信息学分析及其实验验证.

Published in:

Journal of Jilin University (Medicine Edition), 2025, v. 51, n. 2, p. 460, doi. 10.13481/j.1671-587X.20250220

By:

石雨;
李景芝;
陈洪强;
周诗梦;
王娜;
曹佳;
尹俐;
刘文斌

Publication type:

Article

Development of a biomimetic nanoparticle platform for apigenin therapy in triple-negative breast cancer.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1521529

By:

Wang, Chenyang;
Ren, Xiaojing;
Han, Yanmei;
Nan, Ding;
Zhang, Yajing;
Gao, Zairong

Publication type:

Article

Identification and Functional Validation of ACSL1 and FABP3 as Muscle-Related Genes Screened by Transcriptomics in Crossbred Duroc × Berkshire × Diannan Small-Eared Pigs.

Published in:

Genes, 2025, v. 16, n. 5, p. 520, doi. 10.3390/genes16050520

By:

Chen, Bohe;
Liufu, Sui;
Wen, Sheng;
Wang, Kaiming;
Chen, Wenwu;
Xiao, Lanlin;
Liu, Xiaolin;
Yi, Lei;
Liu, Jingwen;
Xu, Xin;
Liu, Caihong;
Wen, Wu;
Ma, Haiming;
Deng, Qiuchun

Publication type:

Article

Comparative Transcriptome Profiling of Ileal and Cecal Tissues Between Pekin Ducks and Shaoxing Ducks.

Published in:

Genes, 2025, v. 16, n. 5, p. 488, doi. 10.3390/genes16050488

By:

Wang, Dandan;
Hu, Zhengyu;
Zhao, Ayong;
Zeng, Tao;
Gu, Tiantian;
Xu, Wenwu;
Tian, Yong;
Lu, Lizhi;
Chen, Li

Publication type:

Article

A Non-Binary Approach to Super-Enhancer Identification and Clustering: A Dataset for Tumor- and Treatment-Associated Dynamics in Mouse Tissues.

Published in:

Data (2306-5729), 2025, v. 10, n. 5, p. 74, doi. 10.3390/data10050074

By:

Osintseva, Ekaterina D.;
Ashniev, German A.;
Orlov, Alexey V.;
Nikitin, Petr I.;
Zaitseva, Zoia G.;
Volkov, Vladimir V.;
Orlova, Natalia N.

Publication type:

Article

FASP 和 iST 酶切方案的比较分析：蛋白质输入量的影响.

Published in:

Journal of Chinese Mass Spectrometry Society, 2025, v. 46, n. 3, p. 292, doi. 10.7538/zpxb.2024.0166

By:

陆澳;
廖焕玥;
楚甜甜;
赵洋;
江游;
叶子弘;
孟波

Publication type:

Article

Using Gene Ontology to Enrich Student Learning.

Published in:

NCSSSMST Journal, 2012, v. 17, n. 1, p. 11

By:

Linderman, Cherly A.

Publication type:

Article

Integrative bioinformatics analysis to identify ferroptosis-related genes in non-obstructive azoospermia.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 8, p. 2145, doi. 10.1007/s10815-024-03155-0

By:

Hong, Yanggang;
Yuan, Qichao;
Wang, Lingfei;
Yang, Zihan;
Xu, Peiyu;
Guan, Xiaoju;
Chen, Congde

Publication type:

Article

Detection of the effect of microvibrational stimulation on human discarded immature oocytes by single-cell transcriptome sequencing technology.

Published in:

Journal of Assisted Reproduction & Genetics, 2023, v. 40, n. 7, p. 1773, doi. 10.1007/s10815-023-02837-5

By:

Liu, Qinli;
Sun, Yanxia;
Guan, Lijun;
Chen, Xinna;
Zhou, Jian;
Liu, Ping;
Huo, Bo

Publication type:

Article

Genome-wide screening differential long non-coding RNAs expression profiles discloses its roles involved in OHSS development.

Published in:

Journal of Assisted Reproduction & Genetics, 2018, v. 35, n. 8, p. 1473, doi. 10.1007/s10815-018-1199-0

By:

Lin, Haiyan;
Li, Yu;
Xing, Weijie;
Qiu, Qi;
Wang, Wenjun;
Zhang, Qingxue

Publication type:

Article

Identification of genes associated with disc degeneration using bioinformatics.

Published in:

Biotechnic & Histochemistry, 2015, v. 90, n. 5, p. 353, doi. 10.3109/10520295.2015.1007481

By:

Ji, S-c;
Han, N;
Liu, Y;
Li, G;
Sun, Z;
Li, Z

Publication type:

Article

Comprehensive transcriptome profiling of squamous cell carcinoma of horn in Bos indicus.

Published in:

Veterinary & Comparative Oncology, 2016, v. 14, n. 2, p. 122, doi. 10.1111/vco.12079

By:

Koringa, P. G.;
Jakhesara, S. J.;
Bhatt, V. D.;
Meshram, C. P.;
Patel, A. K.;
Fefar, D. T.;
Joshi, C. G.

Publication type:

Article

Pectolinarigenin regulates the tumor-associated proteins in AGS-xenograft BALB/c nude mice.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-023-09046-4

By:

Lee, Ho Jeong;
Kwon, Young Sang;
Lee, Ju Hong;
Moon, Yeon Gyu;
Choi, Jungil;
Hyun, Moonjung;
Tak, Tae Kil;
Kim, Je-Hein;
Heo, Jeong Doo

Publication type:

Article

Proteomic analysis of the responses to chelerythrine in the fungal pathogen Ustilaginoidea virens.

Published in:

European Journal of Plant Pathology, 2024, v. 168, n. 1, p. 15, doi. 10.1007/s10658-023-02724-w

By:

Wei, Qing-Hui;
Liu, Xue-Feng;
Chai, Yang-Yang;
Liang, Ming;
Zheng, Bao-Jiang;
Zhao, Min

Publication type:

Article

Variability and evolution of NBS-LRR genes in Agave tequilana and their differential response to Lasiodiplodia infection.

Published in:

European Journal of Plant Pathology, 2022, v. 162, n. 2, p. 305, doi. 10.1007/s10658-021-02404-7

By:

Campos-Rivero, G.;
Narváez-Zapata, J. A.;
Escalante-Erosa, F.;
Sánchez-Teyer, L. F.

Publication type:

Article

Early transcriptional response of seedling roots to Ralstonia solanacearum in tobacco (Nicotiana tabacum L.).

Published in:

European Journal of Plant Pathology, 2019, v. 155, n. 2, p. 527, doi. 10.1007/s10658-019-01788-x

By:

Gao, Wenxia;
Chen, Renjie;
Pan, Mingming;
Tang, Weiqi;
Lan, Tao;
Huang, Likun;
Chi, Wenchao;
Wu, Weiren

Publication type:

Article

Prediction of transcription factors associated with DNA demethylation during human cellular development.

Published in:

Chromosome Research, 2022, v. 30, n. 1, p. 109, doi. 10.1007/s10577-022-09685-6

By:

Miyajima, Yurina;
Noguchi, Shuhei;
Tanaka, Yuki;
Li, Jing-Ru;
Nishimura, Hajime;
Kishima, Mami;
Lim, Joanne;
Furuhata, Erina;
Suzuki, Takahiro;
Kasukawa, Takeya;
Suzuki, Harukazu

Publication type:

Article

Gardnerella vaginalis, Fannyhessea vaginae, and Prevotella bivia Strongly Influence Each Other's Transcriptome in Triple-Species Biofilms.

Published in:

Microbial Ecology, 2024, v. 87, n. 1, p. 1, doi. 10.1007/s00248-024-02433-9

By:

Sousa, Lúcia G. V.;
Novak, Juliano;
França, Angela;
Muzny, Christina A.;
Cerca, Nuno

Publication type:

Article

Comparative Transcriptomic Analysis of the Response of Dunaliella acidophila (Chlorophyta) to Short-Term Cadmium and Chronic Natural Metal-Rich Water Exposures.

Published in:

Microbial Ecology, 2016, v. 72, n. 3, p. 595, doi. 10.1007/s00248-016-0824-7

By:

Puente-Sánchez, Fernando;
Olsson, Sanna;
Aguilera, Angeles

Publication type:

Article

Activity‐regulated gene expression across cell types of the mouse hippocampus.

Published in:

Hippocampus, 2023, v. 33, n. 9, p. 1009, doi. 10.1002/hipo.23548

By:

Nelson, Erik D.;
Maynard, Kristen R.;
Nicholas, Kyndall R.;
Tran, Matthew N.;
Divecha, Heena R.;
Collado‐Torres, Leonardo;
Hicks, Stephanie C.;
Martinowich, Keri

Publication type:

Article

Development of a screening system of gene sets for estimating the time of early skeletal muscle injury based on second-generation sequencing technology.

Published in:

International Journal of Legal Medicine, 2024, v. 138, n. 4, p. 1629, doi. 10.1007/s00414-024-03210-6

By:

Shen, Junyi;
Sun, Hao;
Zhou, Shidong;
Wang, Liangliang;
Dong, Chaoxiu;
Ren, Kang;
Du, Qiuxiang;
Cao, Jie;
Wang, Yingyuan;
Sun, Junhong

Publication type:

Article

Identification of potential markers of fatal hypothermia by a body temperature-dependent gene expression assay.

Published in:

International Journal of Legal Medicine, 2019, v. 133, n. 2, p. 335, doi. 10.1007/s00414-018-1888-3

By:

Umehara, Takahiro;
Murase, Takehiko;
Abe, Yuki;
Shibaike, Yoshinori;
Kagawa, Shinichiro;
Yamamoto, Takuma;
Ikematsu, Kazuya;
Yamashita, Hiromi

Publication type:

Article

Transcriptome-wide association study of coronary artery disease identifies novel susceptibility genes.

Published in:

Basic Research in Cardiology, 2022, v. 117, n. 1, p. 1, doi. 10.1007/s00395-022-00917-8

By:

Li, Ling;
Chen, Zhifen;
von Scheidt, Moritz;
Li, Shuangyue;
Steiner, Andrea;
Güldener, Ulrich;
Koplev, Simon;
Ma, Angela;
Hao, Ke;
Pan, Calvin;
Lusis, Aldons J.;
Pang, Shichao;
Kessler, Thorsten;
Ermel, Raili;
Sukhavasi, Katyayani;
Ruusalepp, Arno;
Gagneur, Julien;
Erdmann, Jeanette;
Kovacic, Jason C.;
Björkegren, Johan L. M.

Publication type:

Article

Prioritization of prognostic biomarkers regulated by calorie restriction in colon cancer through integrated biosignature analysis.

Published in:

Clinical & Experimental Medicine, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10238-025-01630-1

By:

Apalowo, Oladayo E.;
Komakech, Joel J.;
Boateng, Isaac D.;
Nwanna, Esther E.

Publication type:

Article

A network biology approach to understanding the importance of chameleon proteins in human physiology and pathology.

Published in:

Amino Acids, 2017, v. 49, n. 2, p. 303, doi. 10.1007/s00726-016-2361-6

By:

Bahramali, Golnaz;
Goliaei, Bahram;
Minuchehr, Zarrin;
Marashi, Sayed-Amir

Publication type:

Article

Protein function prediction using guilty by association from interaction networks.

Published in:

Amino Acids, 2015, v. 47, n. 12, p. 2583, doi. 10.1007/s00726-015-2049-3

By:

Piovesan, Damiano;
Giollo, Manuel;
Ferrari, Carlo;
Tosatto, Silvio

Publication type:

Article

Shotgun proteomic analysis of wing discs from the domesticated silkworm ( Bombyx mori) during metamorphosis.

Published in:

Amino Acids, 2013, v. 45, n. 5, p. 1231, doi. 10.1007/s00726-013-1588-8

By:

Zhang, Yi-ling;
Xue, Ren-yu;
Cao, Guang-li;
Zhu, Yue-xiong;
Pan, Zhong-hua;
Gong, Cheng-liang

Publication type:

Article