Works matching DE "GENE enhancers"

Results: 1088

The role of MYEOV gene: a review and future directions.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1543590

By:

Xi, Yidan;
Liu, Xuefei;
Ge, Yanan;
Jiang, Mingzhe;
Zhao, Dong;
Zhao, Ershu;
Cai, Fei;
Wang, Xinlong;
Li, Jiatong;
Li, Tingting;
Zheng, Zhendong

Publication type:

Article

EPIPDLF: a pretrained deep learning framework for predicting enhancer–promoter interactions Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btae716

By:

Xiao, Zhichao;
Li, Yan;
Ding, Yijie;
Yu, Liang

Publication type:

Article

Biological roles of enhancer RNA m6A modification and its implications in cancer.

Published in:

Cell Communication & Signaling, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12964-025-02254-4

By:

Han, Yangyang;
Sun, Jingqi;
Yao, Minghui;
Miao, Liying;
Li, Mengjia

Publication type:

Article

A Non-Binary Approach to Super-Enhancer Identification and Clustering: A Dataset for Tumor- and Treatment-Associated Dynamics in Mouse Tissues.

Published in:

Data (2306-5729), 2025, v. 10, n. 5, p. 74, doi. 10.3390/data10050074

By:

Osintseva, Ekaterina D.;
Ashniev, German A.;
Orlov, Alexey V.;
Nikitin, Petr I.;
Zaitseva, Zoia G.;
Volkov, Vladimir V.;
Orlova, Natalia N.

Publication type:

Article

Enhancer biology and enhanceropathies.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 210, doi. 10.1038/nsmb.2784

By:

Smith, Edwin;
Shilatifard, Ali

Publication type:

Article

STARR-seq enterprise.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 308, doi. 10.1038/nsmb.2539

By:

Moorefield, Beth

Publication type:

Article

Genomic methods in profiling DNA accessibility and factor localization.

Published in:

Chromosome Research, 2020, v. 28, n. 1, p. 69, doi. 10.1007/s10577-019-09619-9

By:

Klein, David C.;
Hainer, Sarah J.

Publication type:

Article

Dimethyl fumarate, a two‐edged drug: Current status and future directions.

Published in:

Medicinal Research Reviews, 2019, v. 39, n. 5, p. 1923, doi. 10.1002/med.21567

By:

Saidu, Nathaniel Edward Bennett;
Kavian, Niloufar;
Leroy, Karen;
Jacob, Claus;
Nicco, Carole;
Batteux, Frédéric;
Alexandre, Jérôme

Publication type:

Article

Activation by NarL at the Escherichia coli ogt promoter.

Published in:

Biochemical Journal, 2020, v. 477, n. 15, p. 2807, doi. 10.1042/BCJ20200408

By:

Ruanto, Patcharawarin;
Chismon, David L.;
Hothersall, Joanne;
Godfrey, Rita E.;
Lee, David J.;
Busby, Stephen J. W.;
Browning, Douglas F.

Publication type:

Article

Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment.

Published in:

Bioinformatics, 2017, v. 33, n. 23, p. 3696, doi. 10.1093/bioinformatics/btx503

By:

Rapakoulia, Trisevgeni;
Xin Gao;
Yi Huang;
de Hoon, Michiel;
Okada-Hatakeyama, Mariko;
Suzuki, Harukazu;
Arner, Erik

Publication type:

Article

EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3268, doi. 10.1093/bioinformatics/btx371

By:

Yu He;
Ting Wang

Publication type:

Article

MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3028, doi. 10.1093/bioinformatics/btx381

By:

Ka-Chun Wong

Publication type:

Article

annotatr: genomic regions in context.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2381, doi. 10.1093/bioinformatics/btx183

By:

Cavalcante, Raymond G.;
Sartor, Maureen A.

Publication type:

Article

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.

Published in:

Bioinformatics, 2017, v. 33, n. 5, p. 740, doi. 10.1093/bioinformatics/btw688

By:

Baskin, Elizabeth;
Farouni, Rick;
Mathé, Ewy A.

Publication type:

Article

EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types.

Published in:

Bioinformatics, 2016, v. 32, n. 23, p. 3543, doi. 10.1093/bioinformatics/btw495

By:

Tianshun Gao;
Bing He;
Sheng Liu;
Heng Zhu;
Kai Tan;
Jiang Qian

Publication type:

Article

Erratum.

Published in:: 2015
Publication type:: Correction Notice

Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3109, doi. 10.1093/bioinformatics/btt542

By:

Jjingo, Daudi;
Wang, Jianrong;
Conley, Andrew B.;
Lunyak, Victoria V.;
Jordan, I. King

Publication type:

Article

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 656, doi. 10.1093/bioinformatics/bts028

By:

Göke, Jonathan;
Schulz, Marcel H.;
Lasserre, Julia;
Vingron, Martin

Publication type:

Article

Decoding gene regulatory circuitry underlying TNBC chemoresistance reveals biomarkers for therapy response and therapeutic targets.

Published in:

NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00529-6

By:

Lusby, Ryan;
Zhang, Ziyi;
Mahesh, Arun;
Tiwari, Vijay K.

Publication type:

Article

Heterozygous variants in GATA2 contribute to DCML deficiency in mice by disrupting tandem protein binding.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03316-w

By:

Hasegawa, Atsushi;
Hayasaka, Yuki;
Morita, Masanobu;
Takenaka, Yuta;
Hosaka, Yuna;
Hirano, Ikuo;
Yamamoto, Masayuki;
Shimizu, Ritsuko

Publication type:

Article

GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02889-2

By:

Helness, Anne;
Fraszczak, Jennifer;
Joly-Beauparlant, Charles;
Bagci, Halil;
Trahan, Christian;
Arman, Kaifee;
Shooshtarizadeh, Peiman;
Chen, Riyan;
Ayoub, Marina;
Côté, Jean-François;
Oeffinger, Marlene;
Droit, Arnaud;
Möröy, Tarik

Publication type:

Article

Gene regulation: STATs control subset-specific enhancer activation.

Published in:

Nature Reviews Immunology, 2013, v. 13, n. 1, p. 7, doi. 10.1038/nri3381

By:

Papatriantafyllou, Maria

Publication type:

Article

Gene regulation: Enhancer accessibility to FOXP3.

Published in:

Nature Reviews Immunology, 2012, v. 12, n. 11, p. 743, doi. 10.1038/nri3333

By:

Papatriantafyllou, Maria

Publication type:

Article

Genome organization: Disorder - from chromatin to limb development.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 7, p. 378, doi. 10.1038/nrg3968

By:

Jones, Bryony

Publication type:

Article

Genomics: A catalogue of human gene activity.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 5, p. 290, doi. 10.1038/nrg3720

By:

Lokody, Isabel

Publication type:

Article

Transcriptional enhancers: from properties to genome-wide predictions.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 4, p. 272, doi. 10.1038/nrg3682

By:

Shlyueva, Daria;
Stampfel, Gerald;
Stark, Alexander

Publication type:

Article

Enhancers: BRD4 and JMJD6 regulate antipause enhancers.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 2, p. 67, doi. 10.1038/nrg3671

By:

Lokody, Isabel

Publication type:

Article

Development: Sharing enhancers for a different outcome.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 1, p. 2, doi. 10.1038/nrg3636

By:

Stower, Hannah

Publication type:

Article

Development: Enhancers 'fine-tune' face and skull shape.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 12, p. 825, doi. 10.1038/nrg3633

By:

Flintoft, Louisa

Publication type:

Article

Permeation enhancer nanovesicles mediated topical delivery of curcumin for the treatment of hyperpigmentation.

Published in:

Journal of Liposome Research, 2022, v. 32, n. 4, p. 332, doi. 10.1080/08982104.2021.2024567

By:

Farooqui, Raziya Khatoon;
Kaurav, Monika;
Kumar, Manoj;
Sudheesh, M. S.;
Pandey, Ravi Shankar

Publication type:

Article

Enhancer-driven transcription of MCM8 by E2F4 promotes ATR pathway activation and glioma stem cell characteristics.

Published in:

Hereditas, 2023, v. 160, n. 1, p. 1, doi. 10.1186/s41065-023-00292-x

By:

Sun, Yu-meng;
Zhang, Yi-meng;
Shi, Hai-liang;
Yang, Song;
Zhao, Yin-long;
Liu, Hong-jiang;
Li, Chen;
Liu, Hong-lei;
Yang, Ji-peng;
Song, Jian;
Sun, Guo-zhu;
Yang, Jian-kai

Publication type:

Article

Expression of Immune System-Related Membrane Receptors CD40, RANK, BAFFR and LTβR is Associated with Clinical Outcome of Operated Non-Small-Cell Lung Cancer Patients.

Published in:

Journal of Clinical Medicine, 2019, v. 8, n. 5, p. 741, doi. 10.3390/jcm8050741

By:

Dimitrakopoulos, Foteinos-Ioannis D.;
Kottorou, Anastasia E.;
Antonacopoulou, Anna G.;
Panagopoulos, Nikolaos;
Scopa, Chrisoula;
Kalofonou, Melpomeni;
Dougenis, Dimitrios;
Koutras, Angelos;
Makatsoris, Thomas;
Tzelepi, Vassiliki;
Kalofonos, Haralabos P.

Publication type:

Article

The effects of cannabidiol against Methotrexate-induced lung damage.

Published in:

Basic & Clinical Pharmacology & Toxicology, 2024, v. 134, n. 5, p. 695, doi. 10.1111/bcpt.13992

By:

Ozmen, Ozlem;
Milletsever, Adem;
Tasan, Serife;
Selcuk, Esma;
Savran, Mehtap

Publication type:

Article

Hairy CRISPR: Genome Editing in Plants Using Hairy Root Transformation.

Published in:

Plants (2223-7747), 2022, v. 11, n. 1, p. 51, doi. 10.3390/plants11010051

By:

Kiryushkin, Alexey S.;
Ilina, Elena L.;
Guseva, Elizaveta D.;
Pawlowski, Katharina;
Demchenko, Kirill N.

Publication type:

Article

Enhancer recruitment of a RUNX1, HDAC1 and TLE3 co-repressor complex by mis-expressed FOXC1 blocks differentiation in acute myeloid leukemia.

Published in:

Molecular & Cellular Oncology, 2021, v. 8, n. 6, p. 1, doi. 10.1080/23723556.2021.2003161

By:

Simeoni, Fabrizio;
Somervaille, Tim CP

Publication type:

Article

Targeting the oncogenic activity of TCF3-HLF in leukemia.

Published in:

Molecular & Cellular Oncology, 2020, v. 7, n. 3, p. 1, doi. 10.1080/23723556.2019.1709391

By:

Huang, Yun;
Bourquin, Jean-Pierre

Publication type:

Article

Microdeletion in distal PLP1 enhancers causes hereditary spastic paraplegia 2.

Published in:

Annals of Clinical & Translational Neurology, 2023, v. 10, n. 9, p. 1590, doi. 10.1002/acn3.51848

By:

Zhou, Xun;
Wang, Yige;
He, Runcheng;
Liu, Zhenhua;
Xu, Qian;
Guo, Jifeng;
Yan, Xinxiang;
Li, Jinchen;
Tang, Beisha;
Zeng, Sheng;
Sun, Qiying

Publication type:

Article

RecQ Helicases Function in Development, DNA Repair, and Gene Targeting in Physcomitrella patens.

Published in:

Plant Cell, 2018, v. 30, n. 3, p. 717, doi. 10.1105/tpc.17.00632

By:

Wiedemann, Gertrud;
Gessel, Nico van;
Köchl, Fabian;
Hunn, Lisa;
Schulze, Katrin;
Maloukh, Lina;
Nogué, Fabien;
Decker, Eva L.;
Hartung, Frank;
Reski, Ralf

Publication type:

Article

Unexpected Structure of Plant Promoters.

Published in:

Plant Cell, 2014, v. 26, n. 7, p. 2726, doi. 10.1105/tpc.114.129239

By:

Eckardt, Nancy A.

Publication type:

Article

Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness.

Published in:

Plant Cell, 2013, v. 25, n. 10, p. 4166, doi. 10.1105/tpc.113.116251

By:

Jabnoune, Mehdi;
Secco, David;
Lecampion, Cécile;
Robaglia, Christophe;
Shu, Qingyao;
Poirier, Yves

Publication type:

Article

NFKBIE is a predictive factor of survival and is correlated with immune infiltration and antigen processing and presentation in hepatocellular carcinoma.

Published in:

Oncology Letters, 2024, v. 28, n. 4, p. N.PAG, doi. 10.3892/ol.2024.14613

By:

Zhang, Yang;
Tu, Jinqi;
Wang, Jian;
Dai, Tiancheng;
Zheng, Lin;
Sun, Sinan;
Tu, Conyin;
Li, Heng;
Qian, Liting

Publication type:

Article

rs77283072 influences breast cancer susceptibility by regulating CDKN2A expression.

Published in:

Oncology Letters, 2023, v. 25, n. 2, p. N.PAG, doi. 10.3892/ol.2023.13662

By:

He, Guang-Huan;
Liu, Shao-Dong;
Shi, Xiao-Qian;
Chen, Ying;
Su, Li;
Shi, Qiao-Na;
Sun, Chang

Publication type:

Article

Genome-wide prioritization reveals novel gene signatures associated with cardiotoxic effects of tyrosine kinase inhibitors.

Published in:

Oncology Letters, 2021, v. 21, n. 2, p. 1, doi. 10.3892/ol.2020.12355

By:

YILAN LI;
WEIJIE WANG;
RONG GAO;
XUEMING XU;
YAO ZHANG

Publication type:

Article

Influence of miR-101 on proliferation of liver cancer cells through the MAPK/ERK signaling pathway.

Published in:

Oncology Letters, 2020, v. 19, n. 2, p. 1310, doi. 10.3892/ol.2019.11210

By:

Meng, Xuan;
Shi, Yong;
Xiang, Xin;
Li, Chonghui;
Ge, Xinlan;
Pan, Ke;
Liang, Yurong

Publication type:

Article

Induction of t(11;14) IgH enhancer/promoter-cyclin D1 gene translocation using CRISPR/Cas9.

Published in:

Oncology Letters, 2019, v. 18, n. 1, p. 275, doi. 10.3892/ol.2019.10303

By:

Tsuyama, Naohiro;
Abe, Yu;
Yanagi, Aki;
Yanai, Yukari;
Sugai, Misaki;
Katafuchi, Atsushi;
Kawamura, Fumihiko;
Kamiya, Kenji;
Sakai, Akira

Publication type:

Article

Apoptotic effect of gambogic acid in esophageal squamous cell carcinoma cells via suppression of the NF-#954;B pathway.

Published in:

Oncology Letters, 2016, v. 11, n. 6, p. 3681, doi. 10.3892/ol.2016.4437

By:

WEN-YUE LIU;
XU WU;
CHENG-QUAN LIAO;
JIE SHEN;
JUN LI

Publication type:

Article

Bioinformatics Discovery of Putative Enhancers within Mouse Odorant Receptor Gene Clusters.

Published in:

Chemical Senses, 2019, v. 44, n. 9, p. 705, doi. 10.1093/chemse/bjz043

By:

Farber, James E;
Lane, Robert P

Publication type:

Article

Mechanism of Enhancement of the Responses of the Frog Glossopharyngeal Nerve to Electrolytes by Enhancers.

Published in:

Chemical Senses, 2008, v. 33, n. 6, p. 523, doi. 10.1093/chemse/bjn019

By:

Okuda-Akabane, Kazuhisa;
Fukami, Hideyuki;
Kitada, Yasuyuki

Publication type:

Article

Vitamin D Signaling in the Context of Innate Immunity: Focus on Human Monocytes.

Published in:

Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02211

By:

Carlberg, Carsten

Publication type:

Article

Mechanistic Characterization of RASGRP1 Variants Identifies an hnRNP-K-Regulated Transcriptional Enhancer Contributing to SLE Susceptibility.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.01066

By:

Molineros, Julio E.;
Singh, Bhupinder;
Terao, Chikashi;
Okada, Yukinori;
Kaplan, Jakub;
McDaniel, Barbara;
Akizuki, Shuji;
Sun, Celi;
Webb, Carol F.;
Looger, Loren L.;
Nath, Swapan K.

Publication type:

Article