Works about GENE clusters

Results: 3128

Draft genomes of non-nitrogen-fixing Frankia strains.

Published in:

Journal of Genomics, 2021, v. 9, p. 68, doi. 10.7150/jgen.65429

By:

Carlos-Shanley, Camila;
Guerra, Trina;
Hahn, Dittmar

Publication type:

Article

A novel pilus-associated gene cluster is implicated in Streptococcus agalactiae virulence.

Published in:

Veterinary Research, 2025, v. 56, n. 1, p. 1, doi. 10.1186/s13567-025-01567-z

By:

Xu, Wanyou;
Lu, Qiangsheng;
Tian, Meijuan;
Yuan, Lvfeng;
Song, Yangming;
Zeng, Qiaoying;
Peng, Jie

Publication type:

Article

The Hedyotis diffusa chromosome-level genome and multi-omics analysis provide new insights into the iridoids biosynthetic pathway.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1607226

By:

Chen, Pengyu;
Huang, Zhuang;
Yin, Mingzhu;
Wen, Yu-xin;
Jiang, Qi;
Huang, Ping;
Qian, Rui;
Hong, Xing;
Zhu, Kaojiang;
Xiao, Benjiang;
Chen, Meng;
Li, Shihao;
Huang, Fang;
Han, Lin-tao

Publication type:

Article

The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with a reduced posterior tagma.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02276-x

By:

Papadopoulos, Nikolaos;
Kulkarni, Siddharth S.;
Baranyi, Christian;
Fromm, Bastian;
Setton, Emily V. W.;
Sharma, Prashant P.;
Wanninger, Andreas;
Brenneis, Georg

Publication type:

Article

Analysis of the Rehmannia chingii geneome identifies RcCYP72H7 as an epoxidase in iridoid glycoside biosynthesis.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60909-9

By:

Wang, Fengqing;
Jiang, Zhennan;
Gao, Junge;
Miao, Chunyan;
Song, Ci;
Yang, Yahe;
Ding, Ning;
Li, Yajing;
Sun, Hongzheng;
Xie, Caixia;
Zhang, Bao;
Zhang, Pengyu;
Gu, Li;
Hao, Qiuwen;
Zhang, Zhongyi;
Huang, Luqi;
Yuan, Yuan

Publication type:

Article

Facilitate integrated analysis of single cell multiomic data by binarizing gene expression values.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60899-8

By:

Misra, Rohan;
Ferrena, Alexander;
Zheng, Deyou

Publication type:

Article

印记基因簇 Dlk1-Dio3：揭示非酒精性脂肪性肝病发病机制的新视角.

Published in:

Chinese Journal of Biochemistry & Molecular Biology, 2025, v. 41, n. 6, p. 843, doi. 10.13865/j.cnki.cjbmb.2025.01.1349

By:

肖思嘉;
郑永霞;
王文喜

Publication type:

Article

Genomic Insights into the Pathogenicity of Hypervirulent Aeromonas hydrophila Strain D4 Isolated from Diseased Blunt Snout Bream with the Epidemic Sequence Type 251 Clones.

Published in:

Pathogens, 2025, v. 14, n. 6, p. 570, doi. 10.3390/pathogens14060570

By:

Xu, Li;
Kang, Xingyu;
Wang, Zhicheng;
Xiao, Zuyuan;
Luo, Yi

Publication type:

Article

Heterologous Expression of the Nitrogen-Fixing Gene Cluster from Paenibacillus polymyxa in Bacillus subtilis.

Published in:

Microorganisms, 2025, v. 13, n. 6, p. 1320, doi. 10.3390/microorganisms13061320

By:

Wang, Xiuling;
Gao, Shiqing;
Fu, Jun;
Li, Ruijuan

Publication type:

Article

Isolation and Identification of Burkholderia stagnalis YJ-2 from the Rhizosphere Soil of Woodsia ilvensis to Explore Its Potential as a Biocontrol Agent Against Plant Fungal Diseases.

Published in:

Microorganisms, 2025, v. 13, n. 6, p. 1289, doi. 10.3390/microorganisms13061289

By:

Zhu, Xufei;
Ning, Wanqing;
Xiao, Wei;
Wang, Zhaoren;
Li, Shengli;
Zhang, Jinlong;
Ren, Min;
Xu, Chengnan;
Liu, Bo;
Wang, Yanfeng;
Cheng, Juanli;
Lin, Jinshui

Publication type:

Article

Prospection for potential new non-ribosomal peptide gene clusters in Bacillus genus isolated from fermented foods and soil through genome mining.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1515483

By:

Waongo, Blaise;
Ndayishimiye, Libère;
Tapsoba, François;
Zongo, Wend-Soo Abel;
Li, Jinquan;
Savadogo, Aly

Publication type:

Article

Genome-Guided Metabolomic Profiling of Peptaibol-Producing Trichoderma.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5599, doi. 10.3390/ijms26125599

By:

Sinichich, Arseniy A.;
Krivonos, Danil V.;
Baranova, Anna A.;
Zhitlov, Mikhail Y.;
Belozerova, Olga A.;
Lushpa, Vladislav A.;
Vvedensky, Andrey V.;
Serebryakova, Marina V.;
Kalganova, Anastasia I.;
Kudzhaev, Arsen M.;
Prokopenko, Yuri A.;
Sinelnikova, Sofia S.;
Trusova, Ekaterina A.;
Kovalchuk, Sergey I.;
Ilina, Elena N.;
Terekhov, Stanislav S.;
Alferova, Vera A.

Publication type:

Article

The prominence of Biosynthetic Gene Clusters in the Halophilic Bacteria.

Published in:

Geomicrobiology Journal, 2025, v. 42, n. 7, p. 581, doi. 10.1080/01490451.2025.2492676

By:

Kumar, Amit;
R, Nivetha

Publication type:

Article

Differential Retention and Loss of a Mycotoxin in Fungal Evolution.

Published in:

Toxins, 2025, v. 17, n. 6, p. 311, doi. 10.3390/toxins17060311

By:

Chen, Lin;
Yan, Ziying;
Yang, Bolei;
Tai, Bowen;
Li, Weizhao;
Li, Erfeng;
Wang, Gang;
Xing, Fuguo

Publication type:

Article

The Cobweb of Life Revealed by Genome-Scale Estimates of Horizontal Gene Transfer.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030316

By:

Ge, Fan;
Wang, Li-San;
Kim, Junhyong

Publication type:

Article

Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution.

Published in:

PLoS Biology, 2004, v. 2, n. 7, p. 1, doi. 10.1371/journal.pbio.0020207

By:

Fortna, Andrew;
Kim, Young;
MacLaren, Erik;
Marshall, Kriste;
Hahn, Gretchen;
Meltesen, Lynne;
Brenton, Matthew;
Hink, Raquel;
Burgers, Sonya;
Hernandez-Boussard, Tina;
Karimpour-Fard, Anis;
Glueck, Deborah;
McGavran, Loris;
Berry, Rebecca;
Pollack, Jonathan;
Sikela, James M

Publication type:

Article

The specificity of the bilin lyase CpcS for chromophore attachment to allophycocyanin in the chlorophyll f-containing cyanobacterium Halomicronima hongdechloris.

Published in:

Photosynthesis Research, 2022, v. 151, n. 3, p. 213, doi. 10.1007/s11120-021-00878-4

By:

Li, Yaqiong;
Chen, Min

Publication type:

Article

Deletion of the cytochrome bc complex from Heliobacterium modesticaldum results in viable but non-phototrophic cells.

Published in:

Photosynthesis Research, 2021, v. 148, n. 3, p. 137, doi. 10.1007/s11120-021-00845-z

By:

Leung, Sabrina W.;
Baker, Patricia L.;
Redding, Kevin E.

Publication type:

Article

Interplay between formation of photosynthetic complexes and expression of genes for iron–sulfur cluster assembly in Rhodobacter sphaeroides?

Published in:

Photosynthesis Research, 2021, v. 147, n. 1, p. 39, doi. 10.1007/s11120-020-00789-w

By:

Nie, Xin;
Jäger, Andreas;
Börner, Janek;
Klug, Gabriele

Publication type:

Article

Characterization of cyanobacterial allophycocyanins absorbing far-red light.

Published in:

Photosynthesis Research, 2020, v. 145, n. 3, p. 189, doi. 10.1007/s11120-020-00775-2

By:

Soulier, Nathan;
Laremore, Tatiana N.;
Bryant, Donald A.

Publication type:

Article

The diversity and distribution of D1 proteins in cyanobacteria.

Published in:

Photosynthesis Research, 2020, v. 145, n. 2, p. 111, doi. 10.1007/s11120-020-00762-7

By:

Sheridan, Kevin J.;
Duncan, Elizabeth J.;
Eaton-Rye, Julian J.;
Summerfield, Tina C.

Publication type:

Article

Far-red light allophycocyanin subunits play a role in chlorophyll d accumulation in far-red light.

Published in:

Photosynthesis Research, 2020, v. 143, n. 1, p. 81, doi. 10.1007/s11120-019-00689-8

By:

Bryant, Donald A.;
Shen, Gaozhong;
Turner, Gavin M.;
Soulier, Nathan;
Laremore, Tatiana N.;
Ho, Ming-Yang

Publication type:

Article

Inulin increases the EPS biosynthesis of Lactobacillus delbrueckii ssp. bulgaricus LDB-C1.

Published in:

Biotechnology Letters, 2023, v. 45, n. 5/6, p. 639, doi. 10.1007/s10529-023-03365-z

By:

Guan, Yuxuan;
Cui, Yanhua;
Wang, Qian;
Qu, Xiaojun

Publication type:

Article

Application of RecET-Cre/loxP system in Corynebacterium glutamicum ATCC14067 for l-leucine production.

Published in:

Biotechnology Letters, 2021, v. 43, n. 1, p. 297, doi. 10.1007/s10529-020-03000-1

By:

Luo, Guangjuan;
Zhao, Nannan;
Jiang, Shibo;
Zheng, Suiping

Publication type:

Article

Thermophilin 109 is a naturally produced broad spectrum bacteriocin encoded within the blp gene cluster of Streptococcus thermophilus.

Published in:

Biotechnology Letters, 2019, v. 41, n. 2, p. 283, doi. 10.1007/s10529-018-02637-3

By:

Renye, John A.;
Somkuti, George A.;
Steinberg, Dennis H.

Publication type:

Article

Mining of Egypt’s Red Sea invertebrates for potential bioactive producers.

Published in:

Biotechnology Letters, 2018, v. 40, n. 11/12, p. 1519, doi. 10.1007/s10529-018-2600-x

By:

Helal, Hala S.;
Hanora, Amro;
Khattab, Rania Abdelmonem;
Hamouda, Hayam;
Zedan, Hamdallah

Publication type:

Article

Non-capsulated mutants of a chemical-producing <italic>Klebsiella pneumoniae</italic> strain.

Published in:

Biotechnology Letters, 2018, v. 40, n. 4, p. 679, doi. 10.1007/s10529-018-2524-5

By:

Wei, Dong;
Yuminaga, Yuki;
Shi, Jiping;
Hao, Jian

Publication type:

Article

Nonribosomal peptide synthetase gene clusters and characteristics of predicted NRPS-dependent siderophore synthetases in Armillaria and other species in the Physalacriaceae.

Published in:

Current Genetics, 2023, v. 69, n. 1, p. 7, doi. 10.1007/s00294-022-01256-w

By:

Narh Mensah, Deborah L.;
Wingfield, Brenda D.;
Coetzee, Martin P. A.

Publication type:

Article

Advances in linking polyketides and non-ribosomal peptides to their biosynthetic gene clusters in Fusarium.

Published in:

Current Genetics, 2019, v. 65, n. 6, p. 1263, doi. 10.1007/s00294-019-00998-4

By:

Nielsen, Mikkel Rank;
Sondergaard, Teis Esben;
Giese, Henriette;
Sørensen, Jens Laurids

Publication type:

Article

Botcinic acid biosynthesis in Botrytis cinerea relies on a subtelomeric gene cluster surrounded by relics of transposons and is regulated by the Zn2Cys6 transcription factor BcBoa13.

Published in:

Current Genetics, 2019, v. 65, n. 4, p. 965, doi. 10.1007/s00294-019-00952-4

By:

Porquier, Antoine;
Moraga, Javier;
Morgant, Guillaume;
Dalmais, Bérengère;
Simon, Adeline;
Sghyer, Hind;
Collado, Isidro G.;
Viaud, Muriel

Publication type:

Article

Position matters: multiple functions of LINC-dependent chromosome positioning during meiosis.

Published in:

Current Genetics, 2017, v. 63, n. 6, p. 1037, doi. 10.1007/s00294-017-0699-2

By:

Katsumata, Kazuhiro;
Nishi, Eriko;
Afrin, Sadia;
Narusawa, Kaoru;
Yamamoto, Ayumu

Publication type:

Article

3D clustering of co-regulated genes and its effect on gene expression.

Published in:

Current Genetics, 2017, v. 63, n. 6, p. 1017, doi. 10.1007/s00294-017-0712-9

By:

Du, Manyu;
Bai, Lu

Publication type:

Article

Interplay between pathway-specific and global regulation of the fumonisin gene cluster in the rice pathogen Fusarium fujikuroi.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 13, p. 5869, doi. 10.1007/s00253-016-7426-7

By:

Rösler, Sarah;
Sieber, Christian;
Humpf, Hans-Ulrich;
Tudzynski, Bettina

Publication type:

Article

Connecting the Dots: Mammary Gland and Breast Cancer at Single Cell Resolution.

Published in:

2021

By:

van Amerongen, Renée;
Kordon, Edith C.;
Koledova, Zuzana

Publication type:

Editorial

The wclY gene of Escherichia coli serotype O117 encodes an α1,4-glucosyltransferase with strict acceptor specificity but broad donor specificity.

Published in:

Glycobiology, 2020, v. 30, n. 12, p. 9003, doi. 10.1093/glycob/cwaa045

By:

Kocev, Alexander;
Melamed, Jacob;
Torgov, Vladimir;
Danilov, Leonid;
Veselovsky, Vladimir;
Brockhausen, Inka

Publication type:

Article

Functional analysis of the Helicobacter pullorum N-linked protein glycosylation system.

Published in:

Glycobiology, 2018, v. 28, n. 4, p. 233, doi. 10.1093/glycob/cwx110

By:

Jervis, Adrian J.;
Wood, Alison G.;
Cain, Joel A.;
Butler, Jonathan A.;
Frost, Helen;
Lord, Elizabeth;
Langdon, Rebecca;
Cordwell, Stuart J.;
Wren, Brendan W.;
Linton, Dennis

Publication type:

Article

NFκB-mediated activation of the cellular FUT3, 5 and 6 gene cluster by herpes simplex virus type 1.

Published in:

Glycobiology, 2017, v. 27, n. 11, p. 999, doi. 10.1093/glycob/cwx079

By:

Nordén, Rickard;
Samuelsson, Ebba;
Nyström, Kristina

Publication type:

Article

Biosynthetic Gene Clusters and Liquid Chromatography Coupled to Mass Spectrometry Analysis of Aryl Polyene Pigments from Chryseobacterium sp. kr6 and Lysobacter sp. A03.

Published in:

Colorants, 2025, v. 4, n. 1, p. 1, doi. 10.3390/colorants4010001

By:

Pailliè-Jiménez, Maria Elisa;
Pereira, Jamile Queiroz;
Rodrigues, Eliseu;
Brandelli, Adriano

Publication type:

Article

Association of secondary metabolite gene clusters with host-specific lineages of the cereal blast fungus Pyricularia oryzae.

Published in:

Phytopathology Research, 2025, v. 7, n. 1, p. 1, doi. 10.1186/s42483-025-00322-8

By:

Mehta, Khyati;
Navarro-Muñoz, Jorge C.;
Bakore, Sayali;
Collemare, Jérôme;
Patkar, Rajesh

Publication type:

Article

Deciphering the genome of Simplicillium aogashimaense to understand its mechanisms against the wheat powdery mildew fungus Blumeria graminis f. sp. tritici.

Published in:

Phytopathology Research, 2022, v. 4, n. 1, p. 1, doi. 10.1186/s42483-022-00121-5

By:

Zhu, Mo;
Duan, Xiao;
Cai, Pengkun;
Li, Yong-fang;
Qiu, Zongbo

Publication type:

Article

Identification and characterization of cuproptosis related gene subtypes through multi-omics bioinformatics analysis in breast cancer.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-01952-2

By:

Fang, Dalang;
Zhou, Yu;
Liao, Fengqing;
Lu, Bimin;
Li, Yanghong;
Lv, Mian;
Luo, Zhizhai;
Ma, Yanfei

Publication type:

Article

Rank-dependency of major urinary protein excretion in two house mouse subspecies.

Published in:

Journal of Vertebrate Biology, 2024, v. 73, n. 23046, p. 1, doi. 10.25225/jvb.23046

By:

MACHOLÁN, Miloš;
DANISZOVÁ, Kristina;
HAMPLOVÁ, Petra;
JANOTOVÁ, Kateřina;
KAŠNÝ, Martin;
MIKULA, Ondřej;
VOŠLAJEROVÁ BÍMOVÁ, Barbora;
HIADLOVSKÁ, Zuzana

Publication type:

Article

Rank-dependency of major urinary protein excretion in two house mouse subspecies.

Published in:

Journal of Vertebrate Biology, 2023, p. 1

By:

MACHOLÁN, Miloš;
DANISZOVÁ, Kristina;
HAMPLOVÁ, Petra;
JANOTOVÁ, Kateřina;
KAŠNÝ, Martin;
MIKULA, Ondřej;
VOŠLAJEROVÁ BÍMOVÁ, Barbora;
HIADLOVSKÁ, Zuzana

Publication type:

Article

Bioinformatics insights into transcriptomic biomarkers for atopic dermatitis.

Published in:

Journal of Research in Pharmacy, 2025, v. 29, n. 3, p. 892, doi. 10.12991/jrespharm.1693724

By:

ADIKUSUMA, Wirawan;
MUGIYANTO, Eko;
IRHAM, Lalu Muhammad;
FIRDAYANI, Firdayani;
LISTIANA, Shelvi;
IRESHA, Muthia Rahayu;
MASYITA, Ayu;
MAZAYA, Maulida;
ALFIAN, Riza

Publication type:

Article

Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness.

Published in:

Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00529-2

By:

Costa, Lilian S. Abreu Soares;
de Faria, Mírian Rabelo;
Chiaramonte, Josiane Barros;
Mendes, Lucas W.;
Sepo, Edis;
de Hollander, Mattias;
Fernandes, José Maurício Cunha;
Carrión, Víctor J.;
Bettiol, Wagner;
Mauchline, Tim H.;
Raaijmakers, Jos M.;
Mendes, Rodrigo

Publication type:

Article

Metapangenomics of wild and cultivated banana microbiome reveals a plethora of host-associated protective functions.

Published in:

Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00493-x

By:

Singh, Simrandeep;
Aghdam, Shiva A.;
Lahowetz, Rachel M.;
Brown, Amanda M. V.

Publication type:

Article

Isoprene-degrading bacteria associated with the phyllosphere of Salix fragilis, a high isoprene-emitting willow of the Northern Hemisphere.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00386-x

By:

Gibson, Lisa;
Crombie, Andrew T.;
McNamara, Niall P.;
Murrell, J. Colin

Publication type:

Article

Genome sequence of Epibacterium ulvae strain DSM 24752T, an indigoidine-producing, macroalga-associated member of the marine Roseobacter group.

Published in:

Environmental Microbiome, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s40793-019-0343-5

By:

Breider, Sven;
Sehar, Shama;
Berger, Martine;
Thomas, Torsten;
Brinkhoff, Thorsten;
Egan, Suhelen

Publication type:

Article

Molecular mechanism of flagellar motor rotation arrest in bacterial zoospores of Actinoplanes missouriensis before germination.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07104-6

By:

Kato, Hiromu;
Tanemura, Hiroki;
Kimura, Tomohiro;
Katsuyama, Yohei;
Tezuka, Takeaki;
Ohnishi, Yasuo

Publication type:

Article

Acquisition and evolution of the neurotoxin domoic acid biosynthesis gene cluster in Pseudo-nitzschia species.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07068-7

By:

He, Ziyan;
Xu, Qing;
Chen, Yang;
Liu, Shuya;
Song, Huiyin;
Wang, Hui;
Leaw, Chui Pin;
Chen, Nansheng

Publication type:

Article