Works about GENE clusters

Results: 3070

Association of secondary metabolite gene clusters with host-specific lineages of the cereal blast fungus Pyricularia oryzae.

Published in:

Phytopathology Research, 2025, v. 7, n. 1, p. 1, doi. 10.1186/s42483-025-00322-8

By:

Mehta, Khyati;
Navarro-Muñoz, Jorge C.;
Bakore, Sayali;
Collemare, Jérôme;
Patkar, Rajesh

Publication type:

Article

D-optimal design model and biosynthetic pathway for gentamicin production by Micromonospora purpureochromogenes NRRL B-16094.

Published in:

BMC Microbiology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12866-025-04001-8

By:

Suliman, Muath;
Bishr, Amr S.;
Tohamy, Sally T. K.;
Alshahrani, Mohammad Y.;
Aboshanab, Khaled M.

Publication type:

Article

Draft Genome Sequence and Crude Violacein Production of Biowaste-grown Chromobacterium violaceum Strain RS2B1 Isolated from Nag-aso Boiling Lake, Albay, the Philippines.

Published in:

Philippine Journal of Science, 2025, v. 154, n. 2, p. 345

By:

Balla, Charlene B.;
Cabana, Aloa Jean B.;
C. de la Cruz, Nicole Denice;
Paet, Joseph Martin Q.;
Regalia, Raymond S.;
Malonzo, Charmaine A.;
Peregrino, Jeffrey D.

Publication type:

Article

Engineering UDP‐sugar synthesis pathways for exopolysaccharide biosynthesis in Streptococcus thermophilusAR333.

Published in:

Journal of the Science of Food & Agriculture, 2025, v. 105, n. 8, p. 4657, doi. 10.1002/jsfa.14206

By:

Fan, Yizhou;
Shi, Junkang;
Song, Xin;
Wang, Guangqiang;
Xia, Yongjun;
Ai, Lianzhong;
Xiong, Zhiqiang

Publication type:

Article

Epigenetic deprogramming by disruption of CIZ1-RNA nuclear assemblies in early-stage breast cancers.

Published in:

Journal of Cell Biology, 2025, v. 224, n. 5, p. 1, doi. 10.1083/jcb.202409123

By:

Turvey, Gabrielle L.;
López de Alba, Ernesto;
Stewart, Emma;
Cook, Heather;
Alalti, Ahmad;
Gawne, Richard T.;
Ainscough, Justin F.-X.;
Mason, Andrew S.;
Coverley, Dawn

Publication type:

Article

A highly efficient heterologous expression platform to facilitate the production of microbial natural products in Streptomyces.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-025-02722-z

By:

Wang, Xiuling;
Lin, Ping;
Shen, Qiyao;
Feng, Xueyan;
Xu, Shouying;
Zhang, Qijun;
Liu, Yang;
Ren, Cailing;
Yong, Daojing;
Duan, Qiong;
Huo, Liujie;
Zhang, Youming;
Li, Gang;
Fu, Jun;
Li, Ruijuan

Publication type:

Article

Evolution‐Guided Discovery of Antimycobacterial Triculamin‐Like Lasso Peptides.

Published in:

Angewandte Chemie, 2025, v. 137, n. 20, p. 1, doi. 10.1002/ange.202425134

By:

Merrild, Aske;
Svenningsen, Tiziana;
Chevrette, Marc G.;
Tørring, Thomas

Publication type:

Article

The research team of Prof. Xue Qiao from Peking University and their collaborators have analyzed the auxiliary enzymes of gene cluster in wider plant metabolism.

Published in:: Journal of Chinese Pharmaceutical Sciences, 2025, v. 34, n. 4, p. 402, doi. 10.1073/pnas.2417588122
Publication type:: Article

Identifying the Alkaline Tolerance-Related Genes Through Transcriptome Analysis of Halomonas alkalicola CICC 11012 s.

Published in:

Current Microbiology, 2025, v. 82, n. 7, p. 1, doi. 10.1007/s00284-025-04178-1

By:

Zhai, Lei;
Mu, Shuaicheng;
Liu, Ruina;
Liu, Rui;
Lin, Geer;
Han, Qi;
Yao, Su

Publication type:

Article

Enhancement of spinosad production in Saccharopolyspora spinosa by overexpression of the complete 74-kb spinosyn gene cluster.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-025-02724-x

By:

Gan, Lu;
Zhang, Zhengyu;
Chen, Jingtao;
Shen, Zhichun;
Chen, Wujie;
Chen, Shaoxin;
Li, Jiyang

Publication type:

Article

Four genes shared between rheumatoid arthritis and cervical cancer are associated with cervical cancer prognosis.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01177-x

By:

Su, Shuqiong;
Yang, Bo;
Liu, Huixia;
Yin, Wenyao;
Chen, Shuo;
Du, Ge

Publication type:

Article

产淀粉酶芽孢杆菌的筛选鉴定、生长特性及产酶基因挖掘.

Published in:

Feed Research, 2025, v. 48, n. 6, p. 94, doi. 10.13557/j.cnki.issn1002-2813.2025.06.018

By:

车建美;
王阶平;
郑雪芳;
陈燕萍;
陈冰星;
刘波

Publication type:

Article

早期描述物种的模式标定及基因组解析：以中国第一个被描述的真菌新种五棱散尾鬼笔为例.

Published in:

Mycosystema, 2025, v. 44, n. 4, p. 1, doi. 10.13346/j.mycosystema.240296

By:

梁俊敏;
王科;
杜卓;
赵明君;
蔡磊;
戴玉成

Publication type:

Article

A rare peptide scaffold in kineomicins, the glycopeptide antibiotics produced by Actinokineospora auranticolor DSM 44650.

Published in:

Communications Chemistry, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42004-025-01534-x

By:

Yushchuk, Oleksandr;
Berini, Francesca;
Zhong, Lei;
Rückert-Reed, Christian;
Bernasconi, Elena;
Bartolone, Letizia;
Busche, Tobias;
Kalinowski, Jörn;
Süssmuth, Roderich D.;
Marinelli, Flavia

Publication type:

Article

Robust phylogenetic profile clustering for Saccharomyces cerevisiae proteins.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19370

By:

Harrison, Paul M.

Publication type:

Article

The Cobweb of Life Revealed by Genome-Scale Estimates of Horizontal Gene Transfer.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030316

By:

Ge, Fan;
Wang, Li-San;
Kim, Junhyong

Publication type:

Article

Colorful orthology clustering in bounded-degree similarity graphs.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021400102

By:

Sánchez, Alitzel López;
Lafond, Manuel

Publication type:

Article

Influence of the go-based semantic similarity measures in multi-objective gene clustering algorithm performance.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 6, p. N.PAG, doi. 10.1142/S0219720020500389

By:

Parraga-Alava, Jorge;
Inostroza-Ponta, Mario

Publication type:

Article

TIGRNCRN: Trustful inference of gene regulatory network using clustering and refining the network.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 3, p. N.PAG, doi. 10.1142/S0219720019500185

By:

Pirgazi, Jamshid;
Khanteymoori, Ali Reza;
Jalilkhani, Maryam

Publication type:

Article

GI-Cluster: Detecting genomic islands via consensus clustering on multiple features.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 3, p. N.PAG, doi. 10.1142/S0219720018400103

By:

Lu, Bingxin;
Leong, Hon Wai

Publication type:

Article

Identification of Two Distinct Stereoselective Lysine 5‐Hydroxylases by Genome Mining Based on Alazopeptin Biosynthetic Enzymes.

Published in:

Chemistry - A European Journal, 2025, v. 31, n. 20, p. 1, doi. 10.1002/chem.202404790

By:

Kawai, Seiji;
Moriga, Kota;
Nirdnoy, Warawadee;
Hara, Ryotaro;
Ogawa, Jun;
Katsuyama, Yohei;
Ohnishi, Yasuo

Publication type:

Article

Reassignment of the Structure of a Tryptophan‐Containing Cyclic Tripeptide Produced by the Biarylitide Crosslinking Cytochrome P450<sub>blt</sub>.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 38, p. 1, doi. 10.1002/chem.202400988

By:

Coe, Laura J.;
Zhao, Yongwei;
Padva, Leo;
Keto, Angus;
Schittenhelm, Ralf;
Tailhades, Julien;
Pierens, Greg;
Krenske, Elizabeth H.;
Crüsemann, Max;
De Voss, James J.;
Cryle, Max J.

Publication type:

Article

Identification of the Cirratiomycin Biosynthesis Gene Cluster in Streptomyces Cirratus: Elucidation of the Biosynthetic Pathways for 2,3‐Diaminobutyric Acid and Hydroxymethylserine.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 28, p. 1, doi. 10.1002/chem.202400271

By:

Sakata, Shunki;
Li, Jiafeng;
Yasuno, Yoko;
Shinada, Tetsuro;
Shin‐ya, Kazuo;
Katsuyama, Yohei;
Ohnishi, Yasuo

Publication type:

Article

GNPS‐Guided Discovery of Madurastatin Siderophores from the Termite‐Associated Actinomadura sp. RB99.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 36, p. 1, doi. 10.1002/chem.202200612

By:

Lee, Seoung Rak;
Schalk, Felix;
Schwitalla, Jan W.;
Guo, Huijuan;
Yu, Jae Sik;
Song, Moonyong;
Jung, Won Hee;
de Beer, Z. Wilhelm;
Beemelmanns, Christine;
Kim, Ki Hyun

Publication type:

Article

The specificity of the bilin lyase CpcS for chromophore attachment to allophycocyanin in the chlorophyll f-containing cyanobacterium Halomicronima hongdechloris.

Published in:

Photosynthesis Research, 2022, v. 151, n. 3, p. 213, doi. 10.1007/s11120-021-00878-4

By:

Li, Yaqiong;
Chen, Min

Publication type:

Article

Deletion of the cytochrome bc complex from Heliobacterium modesticaldum results in viable but non-phototrophic cells.

Published in:

Photosynthesis Research, 2021, v. 148, n. 3, p. 137, doi. 10.1007/s11120-021-00845-z

By:

Leung, Sabrina W.;
Baker, Patricia L.;
Redding, Kevin E.

Publication type:

Article

Interplay between formation of photosynthetic complexes and expression of genes for iron–sulfur cluster assembly in Rhodobacter sphaeroides?

Published in:

Photosynthesis Research, 2021, v. 147, n. 1, p. 39, doi. 10.1007/s11120-020-00789-w

By:

Nie, Xin;
Jäger, Andreas;
Börner, Janek;
Klug, Gabriele

Publication type:

Article

Characterization of cyanobacterial allophycocyanins absorbing far-red light.

Published in:

Photosynthesis Research, 2020, v. 145, n. 3, p. 189, doi. 10.1007/s11120-020-00775-2

By:

Soulier, Nathan;
Laremore, Tatiana N.;
Bryant, Donald A.

Publication type:

Article

The diversity and distribution of D1 proteins in cyanobacteria.

Published in:

Photosynthesis Research, 2020, v. 145, n. 2, p. 111, doi. 10.1007/s11120-020-00762-7

By:

Sheridan, Kevin J.;
Duncan, Elizabeth J.;
Eaton-Rye, Julian J.;
Summerfield, Tina C.

Publication type:

Article

Far-red light allophycocyanin subunits play a role in chlorophyll d accumulation in far-red light.

Published in:

Photosynthesis Research, 2020, v. 143, n. 1, p. 81, doi. 10.1007/s11120-019-00689-8

By:

Bryant, Donald A.;
Shen, Gaozhong;
Turner, Gavin M.;
Soulier, Nathan;
Laremore, Tatiana N.;
Ho, Ming-Yang

Publication type:

Article

Application of RecET-Cre/loxP system in Corynebacterium glutamicum ATCC14067 for l-leucine production.

Published in:

Biotechnology Letters, 2021, v. 43, n. 1, p. 297, doi. 10.1007/s10529-020-03000-1

By:

Luo, Guangjuan;
Zhao, Nannan;
Jiang, Shibo;
Zheng, Suiping

Publication type:

Article

Thermophilin 109 is a naturally produced broad spectrum bacteriocin encoded within the blp gene cluster of Streptococcus thermophilus.

Published in:

Biotechnology Letters, 2019, v. 41, n. 2, p. 283, doi. 10.1007/s10529-018-02637-3

By:

Renye, John A.;
Somkuti, George A.;
Steinberg, Dennis H.

Publication type:

Article

Mining of Egypt’s Red Sea invertebrates for potential bioactive producers.

Published in:

Biotechnology Letters, 2018, v. 40, n. 11/12, p. 1519, doi. 10.1007/s10529-018-2600-x

By:

Helal, Hala S.;
Hanora, Amro;
Khattab, Rania Abdelmonem;
Hamouda, Hayam;
Zedan, Hamdallah

Publication type:

Article

Non-capsulated mutants of a chemical-producing <italic>Klebsiella pneumoniae</italic> strain.

Published in:

Biotechnology Letters, 2018, v. 40, n. 4, p. 679, doi. 10.1007/s10529-018-2524-5

By:

Wei, Dong;
Yuminaga, Yuki;
Shi, Jiping;
Hao, Jian

Publication type:

Article

The Bradyrhizobium Sp. LmicA16 Type VI Secretion System Is Required for Efficient Nodulation of Lupinus Spp.

Published in:

Microbial Ecology, 2022, v. 84, n. 3, p. 844, doi. 10.1007/s00248-021-01892-8

By:

Tighilt, L.;
Boulila, F.;
De Sousa, B. F. S.;
Giraud, E.;
Ruiz-Argüeso, T.;
Palacios, J. M.;
Imperial, J.;
Rey, L.

Publication type:

Article

Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids.

Published in:

Microbial Ecology, 2021, v. 81, n. 1, p. 169, doi. 10.1007/s00248-020-01548-z

By:

Pinto, Otávio Henrique Bezerra;
Costa, Flávio Silva;
Rodrigues, Gisele Regina;
da Costa, Rosiane Andrade;
da Rocha Fernandes, Gabriel;
Júnior, Osmindo Rodrigues Pires;
Barreto, Cristine Chaves

Publication type:

Article

Conserved Pigment Profiles in Phylogenetically Diverse Symbiotic Bacteria Associated with the Corals Montastraea cavernosa and Mussismilia braziliensis.

Published in:

Microbial Ecology, 2021, v. 81, n. 1, p. 267, doi. 10.1007/s00248-020-01551-4

By:

Varasteh, Tooba;
Hamerski, Lidilhone;
Tschoeke, Diogo;
Lima, Arthur Silva;
Garcia, Gizele;
Cosenza, Carlos Alberto Nunes;
Thompson, Cristiane;
Thompson, Fabiano

Publication type:

Article

Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia.

Published in:

Microbial Ecology, 2020, v. 80, n. 2, p. 249, doi. 10.1007/s00248-019-01480-x

By:

Walter, Juline M.;
Coutinho, Felipe H.;
Leomil, Luciana;
Hargreaves, Paulo I.;
Campeão, Mariana E.;
Vieira, Verônica V.;
Silva, Beatriz S.;
Fistarol, Giovana O.;
Salomon, Paulo S.;
Sawabe, Tomoo;
Mino, Sayaka;
Hosokawa, Masashi;
Miyashita, Hideaki;
Maruyama, Fumito;
van Verk, Marcel C.;
Dutilh, Bas E.;
Thompson, Cristiane C.;
Thompson, Fabiano L.

Publication type:

Article

Diversity and Distribution of Bacteria Producing Known Secondary Metabolites.

Published in:

Microbial Ecology, 2019, v. 78, n. 4, p. 885, doi. 10.1007/s00248-019-01380-0

By:

Nappi, Jadranka;
Soldi, Erika;
Egan, Suhelen

Publication type:

Article

Genome-wide identification of lncRNAs, miRNAs, mRNAs and their regulatory networks involved in tapping panel dryness in rubber tree (Hevea brasiliensis).

Published in:

Tree Physiology, 2022, v. 42, n. 3, p. 629, doi. 10.1093/treephys/tpab120

By:

Liu, Hui;
Hu, Yiyu;
Yuan, Kun;
Feng, Chengtian;
He, Qiguang;
Sun, Liang;
Wang, Zhenhui

Publication type:

Article

Type III secretion systems impact Mesorhizobium amorphae CCNWGS0123 compatibility with Robinia pseudoacacia.

Published in:

Tree Physiology, 2019, v. 39, n. 9, p. 1533, doi. 10.1093/treephys/tpz077

By:

Wang, Xinye;
Huo, Haibo;
Luo, Yantao;
Liu, Dongying;
Zhao, Liang;
Zong, Le;
Chou, Minxia;
Chen, Juan;
Wei, Gehong

Publication type:

Article

Association between Interleukin-19 Concentration and Degree of Severity of Acne Vulgaris.

Published in:

Zagazig University Medical Journal, 2024, v. 30, p. 232, doi. 10.21608/ZUMJ.2021.68379.2176

By:

Albalat, Waleed Mohamed;
Elsaid, Hanaa Hosny;
Ibrahim, Hadeer Helmy

Publication type:

Article

Knockout of a testis‐specific gene cluster impairs male fertility in the fall armyworm, Spodoptera frugiperda.

Published in:

Pest Management Science, 2025, v. 81, n. 4, p. 2355, doi. 10.1002/ps.8634

By:

Wang, Pei;
Zhao, Yuchen;
Cheng, Yalan;
Tian, Siyu;
Bai, Yuxuan;
Zuo, Junfeng;
Palli, Subba Reddy;
Chen, Xien

Publication type:

Article

Natural herbicidal alkaloid berberine regulates the expression of thalianol and marneral gene clusters in Arabidopsis thaliana.

Published in:

Pest Management Science, 2022, v. 78, n. 7, p. 2896, doi. 10.1002/ps.6914

By:

Li, Dandan;
Bi, Xiaoyang;
Ma, Jingjing;
Zhang, Xiaohong;
Jiang, Keni;
Zhu, Xuezhen;
Huang, Jiguang;
Zhou, Lijuan

Publication type:

Article

High Positive Correlations between ANRIL and p16-CDKN2A/p15-CDKN2B/p14-ARF Gene Cluster Overexpression in Multi-Tumor Types Suggest Deregulated Activation of an ANRIL-ARF Bidirectional Promoter.

Published in:

Non-Coding RNA, 2019, v. 5, n. 3, p. 1, doi. 10.3390/ncrna5030044

By:

Alsibai, Kinan Drak;
Vacher, Sophie;
Meseure, Didier;
Nicolas, Andre;
Lae, Marick;
Schnitzler, Anne;
Chemlali, Walid;
Cros, Jerome;
Longchampt, Elisabeth;
Cacheux, Wulfran;
Pignot, Geraldine;
Callens, Celine;
Pasmant, Eric;
Allory, Yves;
Bieche, Ivan

Publication type:

Article

Unraveling the Biosynthetic Logic Behind the Production of Ramoplanin and Related Lipodepsipeptide Antibiotics.

Published in:

Fermentation (Basel), 2024, v. 10, n. 11, p. 544, doi. 10.3390/fermentation10110544

By:

Yushchuk, Oleksandr;
Zhukrovska, Kseniia;
Binda, Elisa;
Marinelli, Flavia

Publication type:

Article

Characterization of the Gamma-Aminobutyric Acid (GABA) Biosynthetic Gene Cluster in High GABA-Producing Enterococcus avium G-15.

Published in:

Fermentation (Basel), 2024, v. 10, n. 8, p. 379, doi. 10.3390/fermentation10080379

By:

Noda, Masafumi;
Ozaki, Moeko;
Ogura, Saori;
Danshiitsoodol, Narandalai;
Nakashima, Etsuji;
Sugiyama, Masanori

Publication type:

Article

Probiotic Evaluation of Lactiplantibacillus pentosus 68-1, a Rutin Conversion Strain Isolated from Jiangshui, by Genomic Analysis and Tests In Vitro.

Published in:

Fermentation (Basel), 2024, v. 10, n. 2, p. 87, doi. 10.3390/fermentation10020087

By:

Xue, Wenjiao;
Liu, Chen;
Liu, Yao;
Ding, Hao;
An, Chao;
Zhang, Shizhe;
Ma, Saijian;
Zhang, Qiwen

Publication type:

Article

Industrial Production of Antibiotics in Fungi: Current State, Deciphering the Molecular Basis of Classical Strain Improvement and Increasing the Production of High-Yielding Strains by the Addition of Low-Molecular Weight Inducers.

Published in:

Fermentation (Basel), 2023, v. 9, n. 12, p. 1027, doi. 10.3390/fermentation9121027

By:

Zhgun, Alexander A.

Publication type:

Article

Profile of PKS and NRPS Gene Clusters in the Genome of Streptomyces cellostaticus NBRC 12849 T.

Published in:

Fermentation (Basel), 2023, v. 9, n. 11, p. 924, doi. 10.3390/fermentation9110924

By:

Komaki, Hisayuki;
Tamura, Tomohiko

Publication type:

Article