Works matching DE "FUNCTIONAL genomics"

Results: 2013

Chromosome-level genome assembly and annotation of Gypsophila vaccaria.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05121-6

By:

Zhang, Chaoqiang;
Zhang, Jiayin;
Yang, Bin;
Zhao, Yunchen;
Yin, Liang;
Wang, Enjun;
Zhao, Yaqiu;
Li, Jinglong

Publication type:

Article

Haplotype-resolved chromosomal-level genome assembly of Prunus mahaleb.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04873-5

By:

Fu, Chenlong;
Li, Meng;
Zhao, Zhuang;
Yu, Lixia;
Wang, Xianrong;
Hou, Zhuangwei;
Wang, Zefu

Publication type:

Article

Sawfish: improving long-read structural variant discovery and genotyping with local haplotype modeling Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf136

By:

Saunders, Christopher T;
Holt, James M;
Baker, Daniel N;
Lake, Juniper A;
Belyeu, Jonathan R;
Kronenberg, Zev;
Rowell, William J;
Eberle, Michael A

Publication type:

Article

wgatools: an ultrafast toolkit for manipulating whole-genome alignments Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf132

By:

Wei, Wenjie;
Gui, Songtao;
Yang, Jian;
Garrison, Erik;
Yan, Jianbing;
Liu, Hai-Jun

Publication type:

Article

Conditional Control of CRISPR/Cas9 Function by Chemically Modified Oligonucleotides.

Published in:

Molecules, 2025, v. 30, n. 9, p. 1956, doi. 10.3390/molecules30091956

By:

Wang, Liangliang;
Liu, Yan;
Song, Hongjun;
Zhang, Xue;
Wang, Yang

Publication type:

Article

Application and Progress of Genomics in Deciphering the Genetic Regulation Mechanisms of Plant Secondary Metabolites.

Published in:

Plants (2223-7747), 2025, v. 14, n. 9, p. 1316, doi. 10.3390/plants14091316

By:

Liu, Chong;
Xu, Hang;
Li, Zheng;
Wang, Yukun;
Qiao, Siwei;
Zhang, Hao

Publication type:

Article

Research Progress on the Mechanism of Action and Screening Methods of Probiotics for Lowering Blood Lipid Levels.

Published in:

Foods, 2025, v. 14, n. 9, p. 1583, doi. 10.3390/foods14091583

By:

Wang, Jingli;
Chen, Jieyu;
Gao, Mingkun;
Ouyang, Zijun;
Li, Yanhui;
Liu, Dong;
Zhu, Mingjun;
Sun, Haiyan

Publication type:

Article

SAMHD1 knockout hiPSC model enables high lentiviral transduction efficiency in myeloid cell types.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1574545

By:

Li, Huinan;
Afroze, Maliha;
Arora, Gunisha;
Federman, Scot;
Shevade, Kaivalya;
Yang, Yeqing Angela;
Nguyen, Phuong;
Esanov, Rustam;
Przybyla, Laralynne;
Litterman, Adam;
Shafer, Shawn

Publication type:

Article

OGRP: A comprehensive bioinformatics platform for the efficient empowerment of Oleaceae genomics research.

Published in:

Horticulture Plant Journal, 2025, v. 11, n. 3, p. 1308, doi. 10.1016/j.hpj.2024.09.006

By:

Zijian Yu;
Yu Li;
Tengfei Song;
Lixia Gou;
Jiaqi Wang;
Yue Ding;
Zejia Xiao;
Jingyue Qin;
Hui Jiang;
Yan Zhang;
Yishan Feng;
Xiangming Kong;
Shoutong Bao;
Shouliang Yin;
Tianyu Lei;
Jinpeng Wang

Publication type:

Article

Recent developments in cystic fibrosis drug discovery: where are we today?

Published in:

Expert Opinion on Drug Discovery, 2025, v. 20, n. 5, p. 659, doi. 10.1080/17460441.2025.2490250

By:

Lopes-Pacheco, Miquéias;
Winters, Ashlyn G.;
Jackson, JaNise J.;
Olson 3rd, John A.;
Kim, Minsoo;
Ledwitch, Kaitlyn V.;
Tedman, Austin;
Jhangiani, Ashish R.;
Schlebach, Jonathan P.;
Meiler, Jens;
Plate, Lars;
Oliver, Kathryn E.

Publication type:

Article

Survey Sequencing and Comparative Analysis of the Elephant Shark (Callorhinchus milii) Genome.

Published in:

PLoS Biology, 2007, v. 5, n. 4, p. 0932, doi. 10.1371/journal.pbio.0050101

By:

Venkatesh, Byrappa;
Kirkness, Ewen F.;
Yong-Hwee Loh;
Halpern, Aaron L.;
Lee, Alison P.;
Johnson, Justin;
Dandona, Nidhi;
Viswanathan, Lakshmi D.;
Tay, Alice;
J. Craig Venter3;
Strausberg, Robert L.;
Brenner, Sydney

Publication type:

Article

Functional Genomics Thickens the Biological Plot.

Published in:

PLoS Biology, 2005, v. 3, n. 6, p. 1, doi. 10.1371/journal.pbio.0030219

By:

Gewin, Virginia

Publication type:

Article

SEQUENTIAL LINEAR NEIGHBORHOOD PROPAGATION FOR SEMI-SUPERVISED PROTEIN FUNCTION PREDICTION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 663, doi. 10.1142/S0219720011005550

By:

WANG, JINGYAN;
LI, YONGPING

Publication type:

Article

A SURVEY ON HAPLOTYPING ALGORITHMS FOR TIGHTLY LINKED MARKERS.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 1, p. 241, doi. 10.1142/S0219720008003369

By:

JING LI;
TAO JIANG

Publication type:

Article

Biomimetic RNA-Silencing Nanocomplexes: Overcoming Multidrug Resistance in Cancer Cells.

Published in:

Angewandte Chemie, 2014, v. 126, n. 7, p. 2028, doi. 10.1002/ange.201309985

By:

Wang, Zhongliang;
Wang, Zhe;
Liu, Dingbin;
Yan, Xuefeng;
Wang, Fu;
Niu, Gang;
Yang, Min;
Chen, Xiaoyuan

Publication type:

Article

A new method for generation and screening of Chinese cabbage mutants using isolated microspore culturing and EMS mutagenesis.

Published in:

Euphytica, 2016, v. 207, n. 1, p. 23, doi. 10.1007/s10681-015-1473-5

By:

Huang, Shengnan;
Liu, Zhiyong;
Li, Danyang;
Yao, Runpeng;
Feng, Hui

Publication type:

Article

Analysing genetic control of cooked grain traits and gelatinization temperature in a double haploid population of rice by quantitative trait loci mapping.

Published in:

Euphytica, 2009, v. 166, n. 2, p. 165, doi. 10.1007/s10681-008-9808-0

By:

Govindaraj, P.;
Vinod, K. K.;
Arumugachamy, S.;
Maheswaran, M.

Publication type:

Article

Genome sequence analysis of a flocculant-producing bacterium, Paenibacillus shenyangensis.

Published in:

Biotechnology Letters, 2016, v. 38, n. 3, p. 447, doi. 10.1007/s10529-015-1990-2

By:

Fu, Lili;
Jiang, Binhui;
Liu, Jinliang;
Zhao, Xin;
Liu, Qian;
Hu, Xiaomin

Publication type:

Article

Improving the electro-transformation efficiency of Corynebacterium glutamicum by weakening its cell wall and increasing the cytoplasmic membrane fluidity.

Published in:

Biotechnology Letters, 2015, v. 37, n. 12, p. 2445, doi. 10.1007/s10529-015-1934-x

By:

Ruan, Yili;
Zhu, Linjiang;
Li, Qi

Publication type:

Article

Yeast competence for exogenous DNA uptake: towards understanding its genetic component.

Published in:

Antonie van Leeuwenhoek, 2013, v. 103, n. 6, p. 1181, doi. 10.1007/s10482-013-9905-5

By:

Mitrikeski, Petar

Publication type:

Article

Functional Metagenomics as a Tool for Identification of New Antibiotic Resistance Genes from Natural Environments.

Published in:

Microbial Ecology, 2017, v. 73, n. 2, p. 479, doi. 10.1007/s00248-016-0866-x

By:

Santos, Débora;
Istvan, Paula;
Quirino, Betania;
Kruger, Ricardo

Publication type:

Article

Effect of intraportal infusion of tacrolimus on ischaemic reperfusion injury in orthotopic liver transplantation: a randomized controlled trial.

Published in:

Transplant International, 2011, v. 24, n. 9, p. 912, doi. 10.1111/j.1432-2277.2011.01284.x

By:

Kristo, Ivan;
Wilflingseder, Julia;
Kainz, Alexander;
Marschalek, Julian;
Wekerle, Thomas;
Mühlbacher, Ferdinand;
Oberbauer, Rainer;
Bodingbauer, Martin

Publication type:

Article

An extended model of heartwood secondary metabolism informed by functional genomics.

Published in:

Tree Physiology, 2018, v. 38, n. 3, p. 311, doi. 10.1093/treephys/tpx070

By:

Celedon, Jose M;
Bohlmann, Jörg

Publication type:

Article

Revisiting the sequencing of the first tree genome: Populus trichocarpa.

Published in:

2013

By:

Wullschleger, Stan D.;
Weston, D. J.;
DiFazio, S. P.;
Tuskan, G. A.

Publication type:

Opinion

Comparative study of transcriptional and physiological responses to salinity stress in two contrasting Populus alba L. genotypes.

Published in:

Tree Physiology, 2011, v. 31, n. 12, p. 1335, doi. 10.1093/treephys/tpr083

By:

Beritognolo, Isacco;
Harfouche, Antoine;
Brilli, Federico;
Prosperini, Gianluca;
Gaudet, Muriel;
Brosché, Mikael;
Salani, Francesco;
Kuzminsky, Elena;
Auvinen, Petri;
Paulin, Lars;
Kangasjärvi, Jaakko;
Loreto, Francesco;
Valentini, Riccardo;
Mugnozza, Giuseppe Scarascia;
Sabatti, Maurizio

Publication type:

Article

Accumbal μ-opioid receptors and salt taste-elicited hedonic responses in a rodent model of prenatal adversity, and their correlates using human functional genomics.

Published in:

Stress: The International Journal on the Biology of Stress, 2024, v. 27, n. 1, p. 1, doi. 10.1080/10253890.2023.2294954

By:

Bischoff, Adrianne Rahde;
Dalle Molle, Roberta;
Mucellini, Amanda Brondani;
Pokhvisneva, Irina;
Levitan, Robert D.;
Meaney, Michael J.;
Silveira, Patrícia P.

Publication type:

Article

Characterization of aromatic aminotransferases from Ephedra sinica Stapf.

Published in:

Amino Acids, 2016, v. 48, n. 5, p. 1209, doi. 10.1007/s00726-015-2156-1

By:

Kilpatrick, Korey;
Pajak, Agnieszka;
Hagel, Jillian;
Sumarah, Mark;
Lewinsohn, Efraim;
Facchini, Peter;
Marsolais, Frédéric

Publication type:

Article

CRISPR/Cas9 mediates efficient site‐specific mutagenesis of the odorant receptor co‐receptor (Orco) in the malaria vector Anopheles sinensis.

Published in:

Pest Management Science, 2022, v. 78, n. 8, p. 3294, doi. 10.1002/ps.6954

By:

Wang, You;
He, Xingfei;
Qiao, Liang;
Yu, Zhengrong;
Chen, Bin;
He, Zhengbo

Publication type:

Article

Actionability classification of variants of unknown significance correlates with functional effect.

Published in:

NPJ Precision Oncology, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41698-023-00420-w

By:

Johnson, Amber;
Ng, Patrick Kwok-Shing;
Kahle, Michael;
Castillo, Julia;
Amador, Bianca;
Wang, Yujia;
Zeng, Jia;
Holla, Vijaykumar;
Vu, Thuy;
Su, Fei;
Kim, Sun-Hee;
Conway, Tara;
Jiang, Xianli;
Chen, Ken;
Shaw, Kenna R. Mills;
Yap, Timothy A.;
Rodon, Jordi;
Mills, Gordon B.;
Meric-Bernstam, Funda

Publication type:

Article

The Emerging Applications of Artificial MicroRNA-Mediated Gene Silencing in Plant Biotechnology.

Published in:

Non-Coding RNA, 2025, v. 11, n. 2, p. 19, doi. 10.3390/ncrna11020019

By:

Bravo-Vázquez, Luis Alberto;
Castro-Pacheco, Ana Marta;
Pérez-Vargas, Rodrigo;
Velázquez-Jiménez, Joceline Fernanda;
Paul, Sujay

Publication type:

Article

Context-Dependent Regulation of Gene Expression by Non-Canonical Small RNAs.

Published in:

Non-Coding RNA, 2022, v. 8, n. 3, p. 29, doi. 10.3390/ncrna8030029

By:

Plawgo, Kinga;
Raczynska, Katarzyna Dorota

Publication type:

Article

Metazoan tsRNAs: Biogenesis, Evolution and Regulatory Functions.

Published in:

Non-Coding RNA, 2019, v. 5, n. 1, p. 1, doi. 10.3390/ncrna5010018

By:

Shengqian Dou;
Yirong Wang;
Jian Lu

Publication type:

Article

High-throughput sequencing analysis of nuclear-encoded mitochondrial genes reveals a genetic signature of human longevity.

Published in:

GeroScience, 2023, v. 45, n. 1, p. 311, doi. 10.1007/s11357-022-00634-z

By:

Gonzalez, Brenda;
Tare, Archana;
Ryu, Seungjin;
Johnson, Simon C.;
Atzmon, Gil;
Barzilai, Nir;
Kaeberlein, Matt;
Suh, Yousin

Publication type:

Article

矩阵设计检测金针菇转化子外源DNA 插入位点.

Published in:

Mycosystema, 2020, v. 39, n. 6, p. 983, doi. 10.13346/j.mycosystema.200031

By:

刘媛媛;
谢路昱;
李依宁;
马新斌;
杨环;
王朦;
谢宝贵

Publication type:

Article

Role of CYP1A1, CYP2D6, and NOS3 gene polymorphisms in idiopathic recurrent pregnancy loss in the Iranian Azeri population: A case-control study.

Published in:

International Journal of Reproductive Biomedicine, 2022, v. 20, n. 8, p. 671, doi. 10.18502/ijrm.v20i8.11756

By:

Yousefian, Mahsa;
Angaji, Abdolhamid;
Siasi, Elham;
Rahmani, Seyed Ali;
Khiaban, Shamsi Abbasalizadeh

Publication type:

Article

List of Participants.

Published in:: Journal of Animal Science, 2009, v. 87, p. 66, doi. 10.1093/ansci/87.suppl_13.66
Publication type:: Article

Opportunities for improvement in dairy cattle genetics.

Published in:

Journal of Animal Science, 2006, v. 84, p. 409

By:

Sattler, C.;
DeJarnette, J. M.;
Marshall, C.;
Nebel, R.

Publication type:

Article

SheepGenomics - An integrated gene discovery program.

Published in:

Journal of Animal Science, 2006, v. 84, p. 159

By:

Fischer, T. M.

Publication type:

Article

Applications of functional genomics to assess the impact of environmental toxic agents on human health.

Published in:

Oncolog-Hematolog, 2023, n. 64, p. 29

By:

Braicu, Cornelia;
Zănoagă, Oana;
Ciocan, Cristina;
Pruteanu, Lorena-Lavinia;
Lajos, Raduly;
Berindan-Neagoe, Ioana

Publication type:

Article

Applications of Virus-Induced Gene Silencing in Cotton.

Published in:

Plants (2223-7747), 2024, v. 13, n. 2, p. 272, doi. 10.3390/plants13020272

By:

Tian, Yue;
Fang, Yao;
Zhang, Kaixin;
Zhai, Zeyang;
Yang, Yujie;
He, Meiyu;
Cao, Xu

Publication type:

Article

Transcriptome-Based Identification of the Optimal Reference Genes for Quantitative Real-Time Polymerase Chain Reaction Analyses of Lingonberry Fruits throughout the Growth Cycle.

Published in:

Plants (2223-7747), 2023, v. 12, n. 24, p. 4180, doi. 10.3390/plants12244180

By:

Zhang, Wanchen;
Xu, Jian;
Wang, Qiang;
Li, Jing;
Li, Yadong;
Dong, Mei;
Sun, Haiyue

Publication type:

Article

Wheat Omics: Advancements and Opportunities.

Published in:

Plants (2223-7747), 2023, v. 12, n. 3, p. 426, doi. 10.3390/plants12030426

By:

Sehgal, Deepmala;
Dhakate, Priyanka;
Ambreen, Heena;
Shaik, Khasim Hussain Baji;
Rathan, Nagenahalli Dharmegowda;
Anusha, Nayanahalli Munireddy;
Deshmukh, Rupesh;
Vikram, Prashant

Publication type:

Article

Protoplast-Based Transient Expression and Gene Editing in Shrub Willow (Salix purpurea L.).

Published in:

Plants (2223-7747), 2022, v. 11, n. 24, p. 3490, doi. 10.3390/plants11243490

By:

Hyden, Brennan;
Yuan, Guoliang;
Liu, Yang;
Smart, Lawrence B.;
Tuskan, Gerald A.;
Yang, Xiaohan

Publication type:

Article

Callus Induction from Diverse Explants and Genotypes Enables Robust Transformation of Perennial Ryegrass (Lolium perenne L.).

Published in:

Plants (2223-7747), 2022, v. 11, n. 15, p. 2054, doi. 10.3390/plants11152054

By:

Grogg, Daniel;
Rohner, Marius;
Yates, Steven;
Manzanares, Chloe;
Bull, Simon E.;
Dalton, Sue;
Bosch, Maurice;
Studer, Bruno;
Broggini, Giovanni A. L.

Publication type:

Article

Bioinformatics Study of Aux/IAA Family Genes and Their Expression in Response to Different Hormones Treatments during Japanese Apricot Fruit Development and Ripening.

Published in:

Plants (2223-7747), 2022, v. 11, n. 15, p. 1898, doi. 10.3390/plants11151898

By:

Iqbal, Shahid;
Hayat, Faisal;
Mushtaq, Naveed;
Khalil-ur-Rehman, Muhammad;
Khan, Ummara;
Yasoob, Talat Bilal;
Khan, Muhammad Nawaz;
Ni, Zhaojun;
Ting, Shi;
Gao, Zhihong

Publication type:

Article

A New Method for Rapid Subcellular Localization and Gene Function Analysis in Cotton Based on Barley Stripe Mosaic Virus.

Published in:

Plants (2223-7747), 2022, v. 11, n. 13, p. 1765, doi. 10.3390/plants11131765

By:

Chen, Weiwei;
Huang, Chaolin;
Luo, Chenmeng;
Zhang, Yongshan;
Zhang, Bin;
Xie, Zhengqing;
Hao, Mengyuan;
Ling, Hua;
Cao, Gangqiang;
Tian, Baoming;
Wei, Fang;
Shi, Gongyao

Publication type:

Article

Gene Co-Expression Network Tools and Databases for Crop Improvement.

Published in:

Plants (2223-7747), 2022, v. 11, n. 13, p. 1625, doi. 10.3390/plants11131625

By:

Zainal-Abidin, Rabiatul-Adawiah;
Harun, Sarahani;
Vengatharajuloo, Vinothienii;
Tamizi, Amin-Asyraf;
Samsulrizal, Nurul Hidayah

Publication type:

Article

Hairy CRISPR: Genome Editing in Plants Using Hairy Root Transformation.

Published in:

Plants (2223-7747), 2022, v. 11, n. 1, p. 51, doi. 10.3390/plants11010051

By:

Kiryushkin, Alexey S.;
Ilina, Elena L.;
Guseva, Elizaveta D.;
Pawlowski, Katharina;
Demchenko, Kirill N.

Publication type:

Article

Morphological Characterization and DNA Barcoding of Duckweed Species in Saudi Arabia.

Published in:

Plants (2223-7747), 2021, v. 10, n. 11, p. 2438, doi. 10.3390/plants10112438

By:

Al-Dakhil, Mohammed;
Alghamdi, Salem;
Migdadi, Hussein;
Afzal, Muhammad;
Ali, Ahmed Abdelrahim

Publication type:

Article

Genome Wide Analysis of Amino Acid Transporter Superfamily in Solanum lycopersicum.

Published in:

Plants (2223-7747), 2021, v. 10, n. 2, p. 289, doi. 10.3390/plants10020289

By:

Omari Alzahrani, Fatima

Publication type:

Article